FC876952

Overview
NameFC876952
Unique NameFC876952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length326
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14158 contig Ccv1_Contig14158:19..344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 4.719e-29
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1
Query:   58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPITR 279
            MS GSGGGY+R IT+FSP+GRLF VEYAFKAV AAG+TSIGVRGKDS+CVVTH KVPD LLD+TSV HLFPIT+
Sbjct:    1 MSRGSGGGYNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITK 74          
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.373e-28
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1
Query:   58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPITR 279
            MS GSGGGYDR IT+FSP+GRLF VEYAFKAV AAG+TSIGVRGKDS+CVVT  KVPD LLD TSV+HLFPIT+
Sbjct:    1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITK 74          
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.899e-28
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 1
Query:   58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPITR 279
            MS G+G GYDR IT+FSP+GRL+ VEYAFKAV +AGVTSIGVRGKDS+CVVT  KVPD LLDHTSV HLFPIT+
Sbjct:    1 MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITK 74          
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.589e-27
Identity = 57/74 (77.03%), Postives = 65/74 (87.84%), Query Frame = 1
Query:   58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPITR 279
            MS GSG GYDR IT+FSP+GRLF VEYAFKAV AAG+TSIGVRGKDS+CVVT  KVPD LLD +SV+HLFP+T+
Sbjct:    1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLFPVTK 74          
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 7.533e-27
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 1
Query:   58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPITR 279
            MS GSG GYDR IT+FSP+GRLF VEYAFKAV  AG+TSIGVRGKDS+CVVT  KVPD LLD +SV HLFPIT+
Sbjct:    1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITK 74          
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.567e-21
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPIT 276
            MS GS  G+DR IT+FSP+GRL+ VEYAFKA+   G+TS+ VRGKD   +VT  KVPD LLD ++V HLF IT
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKIT 73          

HSP 2 Score: 25.7942 bits (55), Expect = 2.567e-21
Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:  251 VSHIFSQSQEYLGLLATGMTADART 325
            V+H+F  + E +G + TGMTAD+R+
Sbjct:   66 VTHLFKIT-ENIGCVMTGMTADSRS 89          
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.567e-21
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPIT 276
            MS GS  G+DR IT+FSP+GRL+ VEYAFKA+   G+TS+ VRGKD   +VT  KVPD LLD ++V HLF IT
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKIT 73          

HSP 2 Score: 25.7942 bits (55), Expect = 2.567e-21
Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:  251 VSHIFSQSQEYLGLLATGMTADART 325
            V+H+F  + E +G + TGMTAD+R+
Sbjct:   66 VTHLFKIT-ESIGCVMTGMTADSRS 89          
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.567e-21
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPIT 276
            MS GS  G+DR IT+FSP+GRL+ VEYAFKA+   G+TS+ VRGKD   +VT  KVPD LLD ++V HLF IT
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKIT 73          

HSP 2 Score: 25.7942 bits (55), Expect = 2.567e-21
Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:  251 VSHIFSQSQEYLGLLATGMTADART 325
            V+H+F  + E +G + TGMTAD+R+
Sbjct:   66 VTHLFKIT-ENIGCVMTGMTADSRS 89          
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.567e-21
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1
Query:   58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPIT 276
            MS GS  G+DR IT+FSP+GRL+ VEYAFKA+   G+TS+ VRGKD   +VT  KVPD LLD ++V HLF IT
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKIT 73          

HSP 2 Score: 25.7942 bits (55), Expect = 2.567e-21
Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:  251 VSHIFSQSQEYLGLLATGMTADART 325
            V+H+F  + E +G + TGMTAD+R+
Sbjct:   66 VTHLFKIT-ENIGCVMTGMTADSRS 89          
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.862e-19
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 1
Query:   79 GYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPITR 279
            G+DR ITVFSP+GRL+ VEYAFKA   AG+TS+GV GK+  CV++  KVPD L+D ++V H+FPIT+
Sbjct:    6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITK 72          
The following BLAST results are available for this feature:
BLAST of FC876952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSA6_SOYBN4.719e-2981.08Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA6_TOBAC1.373e-2881.08Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA6_ORYSJ8.899e-2878.38Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA6B_ARATH2.589e-2777.03Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]
PSA6A_ARATH7.533e-2777.03Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA6_RAT2.567e-2161.64Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_MOUSE2.567e-2161.64Proteasome subunit alpha type-6 OS=Mus musculus GN... [more]
PSA6_HUMAN2.567e-2161.64Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN2.567e-2161.64Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]
PSA6_SCHPO9.862e-1961.19Probable proteasome subunit alpha type-6 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1DD06RM1 EHR Citrus clementina cDNA clone KN0AAN1DD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876952 ID=FC876952; Name=FC876952; organism=Citrus clementina; type=EST; length=326bp
GCACGAGGGTGAAGACGAAAATTGAAAGAGAGGAATCACCGTAACGTATA
ATCAACAATGAGTATAGGAAGTGGAGGAGGATACGATCGCCCTATTACAG
TTTTTTCGCCTGACGGTCGTCTCTTTCTTGTCGAGTATGCTTTCAAAGCT
GTTGCGGCTGCTGGGGTTACCTCTATCGGTGTTCGAGGAAAGGATTCACT
CTGTGTTGTGACTCATAATAAGGTCCCGGACCATCTTTTGGATCATACAA
GTGTCGCACATCTTTTCCCAATCACAAGAGTACCTTGGATTGCTGGCAAC
TGGAATGACCGCTGATGCAAGGACAT
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