FC876952
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 4.719e-29 Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1 Query: 58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPITR 279 MS GSGGGY+R IT+FSP+GRLF VEYAFKAV AAG+TSIGVRGKDS+CVVTH KVPD LLD+TSV HLFPIT+ Sbjct: 1 MSRGSGGGYNRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITK 74
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 1.373e-28 Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1 Query: 58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPITR 279 MS GSGGGYDR IT+FSP+GRLF VEYAFKAV AAG+TSIGVRGKDS+CVVT KVPD LLD TSV+HLFPIT+ Sbjct: 1 MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITK 74
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 8.899e-28 Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 1 Query: 58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPITR 279 MS G+G GYDR IT+FSP+GRL+ VEYAFKAV +AGVTSIGVRGKDS+CVVT KVPD LLDHTSV HLFPIT+ Sbjct: 1 MSRGTGAGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITK 74
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 2.589e-27 Identity = 57/74 (77.03%), Postives = 65/74 (87.84%), Query Frame = 1 Query: 58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPITR 279 MS GSG GYDR IT+FSP+GRLF VEYAFKAV AAG+TSIGVRGKDS+CVVT KVPD LLD +SV+HLFP+T+ Sbjct: 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLFPVTK 74
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 7.533e-27 Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 1 Query: 58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPITR 279 MS GSG GYDR IT+FSP+GRLF VEYAFKAV AG+TSIGVRGKDS+CVVT KVPD LLD +SV HLFPIT+ Sbjct: 1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITK 74
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.567e-21 Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1 Query: 58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPIT 276 MS GS G+DR IT+FSP+GRL+ VEYAFKA+ G+TS+ VRGKD +VT KVPD LLD ++V HLF IT Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKIT 73 HSP 2 Score: 25.7942 bits (55), Expect = 2.567e-21 Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 2 Query: 251 VSHIFSQSQEYLGLLATGMTADART 325 V+H+F + E +G + TGMTAD+R+ Sbjct: 66 VTHLFKIT-ENIGCVMTGMTADSRS 89
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.567e-21 Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1 Query: 58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPIT 276 MS GS G+DR IT+FSP+GRL+ VEYAFKA+ G+TS+ VRGKD +VT KVPD LLD ++V HLF IT Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKIT 73 HSP 2 Score: 25.7942 bits (55), Expect = 2.567e-21 Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 2 Query: 251 VSHIFSQSQEYLGLLATGMTADART 325 V+H+F + E +G + TGMTAD+R+ Sbjct: 66 VTHLFKIT-ESIGCVMTGMTADSRS 89
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.567e-21 Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1 Query: 58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPIT 276 MS GS G+DR IT+FSP+GRL+ VEYAFKA+ G+TS+ VRGKD +VT KVPD LLD ++V HLF IT Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKIT 73 HSP 2 Score: 25.7942 bits (55), Expect = 2.567e-21 Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 2 Query: 251 VSHIFSQSQEYLGLLATGMTADART 325 V+H+F + E +G + TGMTAD+R+ Sbjct: 66 VTHLFKIT-ENIGCVMTGMTADSRS 89
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.567e-21 Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1 Query: 58 MSIGSGGGYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPIT 276 MS GS G+DR IT+FSP+GRL+ VEYAFKA+ G+TS+ VRGKD +VT KVPD LLD ++V HLF IT Sbjct: 1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKIT 73 HSP 2 Score: 25.7942 bits (55), Expect = 2.567e-21 Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 2 Query: 251 VSHIFSQSQEYLGLLATGMTADART 325 V+H+F + E +G + TGMTAD+R+ Sbjct: 66 VTHLFKIT-ENIGCVMTGMTADSRS 89
BLAST of FC876952 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.862e-19 Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 1 Query: 79 GYDRPITVFSPDGRLFLVEYAFKAVAAAGVTSIGVRGKDSLCVVTHNKVPDHLLDHTSVAHLFPITR 279 G+DR ITVFSP+GRL+ VEYAFKA AG+TS+GV GK+ CV++ KVPD L+D ++V H+FPIT+ Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFPITK 72 The following BLAST results are available for this feature:
BLAST of FC876952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876952 ID=FC876952; Name=FC876952; organism=Citrus clementina; type=EST; length=326bpback to top |