FC876983

Overview
NameFC876983
Unique NameFC876983
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length894
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876983_ssr112 microsatellite FC876983_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10437 contig Ccv1_Contig10437:1..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876983 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.913e-31
Identity = 89/192 (46.35%), Postives = 100/192 (52.08%), Query Frame = 2
Query:  146 CICNSQVQRCAEDRTILITTYEGNHNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGIMNP-NLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPXXXXXXXXXXXXXXPGQPQNLASVTNTQLPQVFGQALYN---QSKFSGXXXXXXXXXXXXXXXHQTXXXXXXXXXXXADTVSAATAAITADPNF 709
            C    QVQRCAEDR+ILITTYEGNHNH                            DG+MNP NLLARAILPCSSSMATISASAPFPT+TLDLT+SPN                 +P    +V    LPQV GQA+YN   QSKFSG                             A++VSAA+AAI +DPNF
Sbjct:  328 CPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLLSGSMSSQDGLMNPTNLLARAILPCSSSMATISASAPFPTITLDLTNSPNGNNPNMTTNNPLMQFAQRPGFNPAV----LPQVVGQAMYNNQQQSKFSGLQL-------------PAQPLQIAATSSVAESVSAASAAIASDPNF 502          
BLAST of FC876983 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.380e-31
Identity = 87/198 (43.94%), Postives = 97/198 (48.99%), Query Frame = 2
Query:  146 CICNSQVQRCAEDRTILITTYEGNHNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGIMNP-NLLARAILPCSSSMATISASAPFPTVTLDLTHSPNP---------XXXXXXXXXXXXXXPGQPQNLASVTNTQLPQVFGQALYNQSKFSGXXXXXXXXXXXXXXXHQTXXXXXXXXXXXADTVSAATAAITADPNF 709
            C    QVQRCAEDR+ILITTYEGNHNH                            DG+MNP NLLARA+LPCS+SMATISASAPFPTVTLDLTHSP P                         Q Q + ++    LP V GQALYNQSKFSG                             ADT++    A+TADPNF
Sbjct:  343 CPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAVLPCSTSMATISASAPFPTVTLDLTHSPPPPNGSNPSSSAATNNNHNSLMQRPQQQQQQMTNLPPGMLPHVIGQALYNQSKFSGLQFSGGSPSTAAFSQSHA----------VADTIT----ALTADPNF 526          
BLAST of FC876983 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.024e-28
Identity = 86/192 (44.79%), Postives = 95/192 (49.48%), Query Frame = 2
Query:  146 CICNSQVQRCAEDRTILITTYEGNHNHXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DGIMNP-NLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPXXXXXXXXXXXXXXPGQPQNLASVTNTQLPQVFGQALY--NQSKFSGXXXXXXXXXXXXXXXHQTXXXXXXXXXXXADTVSAATAAITADPNF 709
            C    QVQRCAEDRTILITTYEGNHNH                             DG+MNP NLLAR ILPCSSSMATISASAPFPT+TLDLT SPN                 Q   L  +  + LP + GQALY   QSKFSG                              ++VSAATAAI ++PNF
Sbjct:  323 CPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTNLLARTILPCSSSMATISASAPFPTITLDLTESPNGNNPTNNPLMQF----SQRSGLVELNQSVLPHMMGQALYYNQQSKFSG-------------------LHMPSQPLNAGESVSAATAAIASNPNF 491          
The following BLAST results are available for this feature:
BLAST of FC876983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
WRK31_ARATH4.913e-3146.35Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRKY6_ARATH8.380e-3143.94WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
WRK42_ARATH1.024e-2844.79Probable WRKY transcription factor 42 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1DF02RM1 EHR Citrus clementina cDNA clone KN0AAN1DF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876983 ID=FC876983; Name=FC876983; organism=Citrus clementina; type=EST; length=894bp
GCACGAGGGTTGCCCAGTTCGTAAGCAAGTATGTTTCATTAATATTCATC
TGTGCAGTTCATTGTGTCATATTATTATCGTTATTAATAAATTAAGTTAG
CTACCGGAAGCTAATTAATTAATCTAACAATTAAATATATGTGTGTGTAT
ATGTAATTCGCAGGTTCAACGTTGTGCGGAAGATAGGACGATTTTGATAA
CAACTTATGAAGGCAATCACAATCATCCCTTACCTCCTGCTGCAATGGCA
ATGGCATCAACAACAACAGCTGCTGCTAGCATGTTACTTTCAGGATCAAT
GTCGAGTGCAGATGGGATAATGAACCCCAATTTGCTAGCCAGAGCTATTC
TTCCTTGCTCATCAAGCATGGCTACGATTTCAGCTTCTGCCCCATTTCCT
ACAGTTACATTAGACCTTACTCATTCACCAAACCCTTTACAACTCCAAAG
GCAAGCAGCTCAATTCCAAGTCCAATTTCCAGGCCAGCCACAAAATCTTG
CCTCTGTCACAAACACTCAATTGCCTCAAGTTTTTGGTCAGGCCCTTTAC
AATCAATCAAAATTCTCAGGTCTACAATTATCTCAAAATATTGGGTCTAA
TTCTCAATCGGGTAGCCATCAAACTCTACCTCCACCATTGCAACAACCGC
AGCAGTTGGCTGACACTGTAAGTGCCGCCACGGCCGCCATCACAGCTGAT
CCAAACTTCACTGCAGCTCTTGCCGCCGCCATCACTTCCATTATTGGCGG
TGCACAAAATCCTTTTAGCAACAACTCCAATAATAACAACAGGCAACACC
AATAAACTTTACAGCTTCTCATCAAATTAGAGATGGGCCAGCTCTTTCTT
TTTCACTTTTTATCAATGTTTTCATGTTATTAATTCTTTTTATT
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