FC876984

Overview
NameFC876984
Unique NameFC876984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876984_ssr350 microsatellite FC876984_ssr350:350..369. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10424 contig Ccv1_Contig10424:2..420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876984 vs. ExPASy Swiss-Prot
Match: PPA16_ARATH (Probable inactive purple acid phosphatase 16 OS=Arabidopsis thaliana GN=PAP16 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.905e-31
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:    9 VKALFVGHNHGLDWCCPYQN-LWLCFARHTGYGGYGNWPIGARILEITEQPFSLKSWIRMEDGSVNSEV 212
            VKA+FVGHNHGLDWCCPY++ LWLCFARHTGYGGYGNWP G+RILEI+E PF +K+WIRMEDGSV+SEV
Sbjct:  294 VKAVFVGHNHGLDWCCPYKDKLWLCFARHTGYGGYGNWPRGSRILEISEMPFRIKTWIRMEDGSVHSEV 362
The following BLAST results are available for this feature:
BLAST of FC876984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PPA16_ARATH2.905e-3182.61Probable inactive purple acid phosphatase 16 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1DF03RM1 EHR Citrus clementina cDNA clone KN0AAN1DF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876984 ID=FC876984; Name=FC876984; organism=Citrus clementina; type=EST; length=419bp
GCACGAGGGTCAAGGCACTGTTTGTTGGACACAACCACGGATTGGACTGG
TGCTGCCCCTATCAAAATCTATGGCTCTGCTTTGCTAGACATACTGGTTA
TGGCGGCTACGGAAATTGGCCCATAGGTGCTAGAATTCTGGAGATAACAG
AACAGCCGTTCTCTCTCAAGTCCTGGATAAGAATGGAAGATGGTTCTGTG
AATAGTGAAGTTATATTGAGTTCTTAACTTAAAACTCTCGTGCTTTGAAA
GTAAAATGCTCAATAAATAAGCAAACGTACGAGTGTTGTGCAATGTAAAA
CAATAAAATGATAATCTTCTTCATGCTTAAGTGATTGCTTGGACCCTGAA
TTTATTTATTTATTTATTTTTGGCTTTTTCACTTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAATAA
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