FC876996

Overview
NameFC876996
Unique NameFC876996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERG_ARATH (GTP-binding protein ERG OS=Arabidopsis thaliana GN=ERG PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 3.723e-50
Identity = 96/117 (82.05%), Postives = 106/117 (90.60%), Query Frame = 3
Query:    9 TQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            +QYLM+QAV++PW ED  TMSEEV+KNISLEVVRERLLDHVHQEIPY +EHRL+DWK+LRDGSLRIEQHLIT KLSQRKILVGK G KIGRIG+EANEELR I  R VHLILQV+LK
Sbjct:  321 SQYLMDQAVKKPWEEDAFTMSEEVLKNISLEVVRERLLDHVHQEIPYGLEHRLVDWKELRDGSLRIEQHLITPKLSQRKILVGKGGCKIGRIGIEANEELRRIMNRKVHLILQVKLK 437          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERG_ANTMA (GTP-binding protein ERG OS=Antirrhinum majus GN=ERG PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.152e-49
Identity = 95/116 (81.90%), Postives = 105/116 (90.52%), Query Frame = 3
Query:   12 QYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            QYL EQAV+RPW EDP  MSEEVMKNISLEVVRE+LLD+VHQEIPY IEHRL+ WK+LRDGSLRIEQH IT K+SQRKILVGK GSKIG IG+EANEELRSIFKR+VHLIL V++K
Sbjct:  308 QYLTEQAVKRPWDEDPFAMSEEVMKNISLEVVREKLLDYVHQEIPYGIEHRLMGWKELRDGSLRIEQHFITPKMSQRKILVGKKGSKIGTIGIEANEELRSIFKRNVHLILMVKVK 423          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_AGRT5 (GTP-binding protein era homolog OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=era PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.517e-16
Identity = 42/115 (36.52%), Postives = 69/115 (60.00%), Query Frame = 3
Query:   15 YLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            YL+E   + PW      +S+  M+ ++ E+ RE+L   +HQE+PY+       W++ +DGS+RIEQ +   + SQ+KI +GKNG  I  I   + +EL  I ++ VHL L V+++
Sbjct:  183 YLVETLPEGPWYYPEDQISDLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIYVERDSQKKIALGKNGDAIKAISTASRKELSEILEQPVHLFLFVKVR 297          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_OLICO (GTP-binding protein era homolog OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=era PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.835e-16
Identity = 38/98 (38.78%), Postives = 66/98 (67.35%), Query Frame = 3
Query:   66 MSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            MS+  +++++ E+ RE++  ++HQE+PY        WK++R+GS+RIEQ +   + SQRKI++GK G+ I  IG +A +E+  I  + VHL L V+++
Sbjct:  191 MSDAPLRHLAAEITREKIYRNLHQELPYQSTVETESWKEMRNGSVRIEQTIFVERDSQRKIVLGKGGATIKAIGADARKEIAEIVGQPVHLFLFVKVR 288          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERAL_HUMAN (GTP-binding protein era homolog OS=Homo sapiens GN=ERAL1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.835e-16
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 3
Query:    3 TRTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRL 356
            T  QYL+ QA   PW      ++ +  + I   ++RE+LL+H+ QE+PY+++ +   W++   G L I+Q L+  K S  K+L+G  G  I +I  EA  +L  IF  DV + L V+L
Sbjct:  318 TLKQYLLTQAQPGPWEYHSAVLTSQTPEEICANIIREKLLEHLPQEVPYNVQQKTAVWEEGPGGELVIQQKLLVPKESYVKLLIGPKGHVISQIAQEAGHDLMDIFLCDVDIRLSVKL 435          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_SINMW (GTP-binding protein era homolog OS=Sinorhizobium medicae (strain WSM419) GN=era PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.336e-15
Identity = 41/115 (35.65%), Postives = 68/115 (59.13%), Query Frame = 3
Query:   15 YLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            YL E+  + PW      +S+  M+ ++ E+ RE+L   +HQE+PY+       W++ +DGS+RIEQ +   + SQ+KI +GK G  I  I   A +E+  I ++ VHL L V+++
Sbjct:  177 YLAERLPEGPWYYPEDQISDLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIYVERDSQKKIALGKGGEAIKAISTAARKEISEILEQPVHLFLFVKVR 291          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_BRASB (GTP-binding protein era homolog OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=era PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.745e-15
Identity = 38/98 (38.78%), Postives = 63/98 (64.29%), Query Frame = 3
Query:   66 MSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            MS+  M++++ E+ RE++  H+HQE+PY        W + +DGS+RIEQ +   + SQRKI++GK G+ I  IG ++ +E+  I    VHL L V+++
Sbjct:  191 MSDAPMRHLAAEITREKIYSHLHQELPYQSTVETDSWTERKDGSIRIEQTIFVERDSQRKIVLGKGGATIKSIGAQSRKEIAEITGVPVHLFLFVKVR 288          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_RHIME (GTP-binding protein era homolog OS=Rhizobium meliloti GN=era PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.280e-15
Identity = 41/115 (35.65%), Postives = 67/115 (58.26%), Query Frame = 3
Query:   15 YLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            YL E   + PW      +S+  M+ ++ E+ RE+L   +HQE+PY+       W++ +DGS+RIEQ +   + SQ+KI +GK G  I  I   A +E+  I ++ VHL L V+++
Sbjct:  180 YLAETLPEGPWYYPEDQISDLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIYVERDSQKKIALGKGGEAIKAISTAARKEISEILEQPVHLFLFVKVR 294          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_BRASO (GTP-binding protein era homolog OS=Bradyrhizobium sp. (strain ORS278) GN=era PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.280e-15
Identity = 41/114 (35.96%), Postives = 66/114 (57.89%), Query Frame = 3
Query:   18 LMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            L E     P+      MS+  M++++ E+ RE++  H+HQE+PY        W +  DGS+RIEQ +   + SQRKI++GK G+ I  IG ++ +E+  I    VHL L V+++
Sbjct:  174 LAEMVPPGPFHYPEDQMSDAPMRHLAAEITREKIYSHLHQELPYQSTVETDSWTERNDGSIRIEQTIFVERDSQRKIVLGKGGATIKSIGAQSRKEIAEITGVPVHLFLFVKVR 287          
BLAST of FC876996 vs. ExPASy Swiss-Prot
Match: ERA_BRUSU (GTP-binding protein era homolog OS=Brucella suis GN=era PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.663e-15
Identity = 39/116 (33.62%), Postives = 68/116 (58.62%), Query Frame = 3
Query:   12 QYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 359
            +YL E     PW      +S+  M+ ++ E+ RE+L   +H+E+PY+       W++ +DGS+RIEQ +   + SQ+KI++G  G  +  IG  A +E+  I ++ VHL L V+++
Sbjct:  177 KYLAESVPNGPWYYPEDQISDIPMRQLAAEITREKLYLRLHEELPYASTVETERWEERKDGSVRIEQVIYVERESQKKIVLGHKGETVKAIGQAARKEISEILEQTVHLFLFVKVR 292          
The following BLAST results are available for this feature:
BLAST of FC876996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ERG_ARATH3.723e-5082.05GTP-binding protein ERG OS=Arabidopsis thaliana GN... [more]
ERG_ANTMA3.152e-4981.90GTP-binding protein ERG OS=Antirrhinum majus GN=ER... [more]
ERA_AGRT53.517e-1636.52GTP-binding protein era homolog OS=Agrobacterium t... [more]
ERA_OLICO7.835e-1638.78GTP-binding protein era homolog OS=Oligotropha car... [more]
ERAL_HUMAN7.835e-1635.59GTP-binding protein era homolog OS=Homo sapiens GN... [more]
ERA_SINMW1.336e-1535.65GTP-binding protein era homolog OS=Sinorhizobium m... [more]
ERA_BRASB1.745e-1538.78GTP-binding protein era homolog OS=Bradyrhizobium ... [more]
ERA_RHIME2.280e-1535.65GTP-binding protein era homolog OS=Rhizobium melil... [more]
ERA_BRASO2.280e-1535.96GTP-binding protein era homolog OS=Bradyrhizobium ... [more]
ERA_BRUSU8.663e-1533.62GTP-binding protein era homolog OS=Brucella suis G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3CC09RM1 EHR Citrus clementina cDNA clone KN0AAN3CC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876996 ID=FC876996; Name=FC876996; organism=Citrus clementina; type=EST; length=774bp
GCACGAGGACTCAATATTTGATGGAGCAGGCAGTTCAAAGACCTTGGTCT
GAAGATCCATTAACCATGAGTGAAGAAGTTATGAAGAACATTTCATTGGA
AGTCGTCCGGGAGAGGTTACTGGACCATGTACATCAGGAAATTCCTTACA
GTATTGAACATCGGTTGATAGACTGGAAGGATTTACGAGATGGCTCCCTT
AGGATTGAACAACACTTGATTACCAACAAGCTAAGCCAGCGAAAAATTCT
CGTGGGGAAGAATGGCTCTAAAATAGGGAGAATAGGTGTTGAAGCTAATG
AAGAGCTAAGGTCCATCTTTAAAAGGGATGTGCATCTAATCCTCCAGGTT
AGACTAAAGACTTAAGTGATGGGCTCAACAAATGAATCAATTTTTGAGAA
GTGCTTCATCTCGCACTGTACCATCTGATTGTGTATATATGAAGAAGGCC
TATCAGGTGCACTTCTACGGTAAACATCTGGTTTCTTTCCCTTGCAAAGG
TTTTTTAGAGTTGAGCTTTAATTCAGGAGTTTAAATTGGACACCTAGGCG
TTGTAACACAAATGCCCCAAGAGCCCCTTATTTTAGGGGGGGAAAAAATC
TGCATTATCTTTTCTTGTATTATGTTTATCTTGCAGCATCTCGTTAAGAT
TAATTTGCCTAGCTTTTTTAATCTGAATTCATTCTGGTATTTATAAATTT
TGTACTTATGTACCATTGTACAATGACTACATTATGTTATTCATTGAAAA
ATTACTTTCATTGGGTTATCAAAA
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