FC877002

Overview
NameFC877002
Unique NameFC877002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10368 contig Ccv1_Contig10368:60..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877002 vs. ExPASy Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.402e-24
Identity = 60/160 (37.50%), Postives = 79/160 (49.38%), Query Frame = 3
Query:    3 LEVAMTILVPEVDATRWIVGTNQGWTNNVNYTIGAKYSRFYGGTGASLCMTGTI*MCWR*TKADY*SSNSDHPLHNWTTGAGGDVVPLNVTRHYYFISGEGFCYGGMKLAVHVENXXXXXXXXXIKEKSGTPGTLYRGQLVLP-TVFAIGAVWDAFVRFW 479
            L   M   +P V A ++ VG N+ W  N+NYTI A+   FY G                  K DY    +DHP+ NWT GAG D+V LN T+HYY + G+G CYGGMKL+V VE          +K            Q ++P ++FA  A+WD   R W
Sbjct:   13 LAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPPPPKSAPVKNIGSVSMVTGLAQFMIPVSLFAFPAMWDVISRMW 172          
The following BLAST results are available for this feature:
BLAST of FC877002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LAML_ARATH2.402e-2437.50Lamin-like protein OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1DG08RM1 EHR Citrus clementina cDNA clone KN0AAN1DG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877002 ID=FC877002; Name=FC877002; organism=Citrus clementina; type=EST; length=626bp
TGCTGGAGGTTGCCATGACTATTCTGGTGCCGGAGGTGGATGCAACTAGA
TGGATTGTGGGAACCAACCAAGGTTGGACCAATAACGTGAACTATACCAT
AGGGGCAAAATATAGTCGCTTTTACGGGGGGACTGGCGCTTCGTTGTGTA
TGACAGGAACCATATGAATGTGCTGGAGGTGAACAAAAGCAGACTACTAA
TCAAGCAACTCTGATCATCCCCTTCACAACTGGACCACAGGAGCAGGAGG
AGATGTGGTTCCTCTGAATGTGACCCGGCATTACTACTTCATCAGCGGAG
AGGGCTTCTGCTATGGTGGCATGAAGTTAGCTGTCCATGTTGAGAACCCG
CCTCCTCCTCCCTCGGCTTCCCCTATTAAAGAAAAGAGCGGCACACCAGG
TACTCTCTACAGAGGCCAGCTTGTTTTGCCAACAGTTTTTGCCATTGGTG
CTGTCTGGGATGCATTCGTCCGGTTCTGGTAACAATGTCAAGCTTAGAAT
TATTTATAACGATAATCACAATCTCCTTAGACATTCCTTAGATCTATTTG
TGAAAGGAACTGAGTCCTCTTCCACTTATTTTTTCGGGGGGAAAATTTTC
TTACTGGGGCAAACTATTTTGTGTTG
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