FC877004

Overview
NameFC877004
Unique NameFC877004
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10366 contig Ccv1_Contig10366:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877004 vs. ExPASy Swiss-Prot
Match: ZIP2_ARATH (Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 8.716e-63
Identity = 130/237 (54.85%), Postives = 160/237 (67.51%), Query Frame = 1
Query:   22 LLVAFPPTFIDGTRVFFS--SEPNLL------AGIFLGTSMMHFLSDSNETFEDLTSKSYPFAFMLASAGYLLTMFGDCIINFVIKQG-----------SKKETRVDVEQQKSEQV--GTDGNPVFFMTSSIGDTILLILALCFHSFFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFTISSPIGVGIGIAIDATTQGHIADWIYAISMGLA 669
            +++ F  TF+ G   +F   +E  LL       GIFL T+++HFLSD+NETF  L  K YP+AFMLA+AGY LTM  D  + FV               S+++  V V+++   ++  G D +     TS  GDT LLI ALCFHS FEGIAIG+S TK +AWRNLWTISLHK+FAA+AMGIALL++IPKRPF LT  YSFAF ISSPIGVGIGI I+AT+QG   DW YAISMGLA
Sbjct:   68 IIILFFSTFLAGVSPYFYRWNESFLLLGTQFSGGIFLATALIHFLSDANETFRGLKHKEYPYAFMLAAAGYCLTMLADVAVAFVAAGSNNNHVGASVGESREDDDVAVKEEGRREIKSGVDVSQALIRTSGFGDTALLIFALCFHSIFEGIAIGLSDTKSDAWRNLWTISLHKVFAAVAMGIALLKLIPKRPFFLTVVYSFAFGISSPIGVGIGIGINATSQGAGGDWTYAISMGLA 304          
BLAST of FC877004 vs. ExPASy Swiss-Prot
Match: ZIP11_ARATH (Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP11 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.901e-58
Identity = 123/234 (52.56%), Postives = 155/234 (66.24%), Query Frame = 1
Query:   16 ALLLVAFPPTFIDGTRVFFSS--------EPNLLAGIFLGTSMMHFLSDSNETFEDLT--------SKSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEQQKSEQVGTDGNPVFFMTSSIGDTILLILALCFHSFFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFTISSPIGVGIGIAIDATTQGHIADWIYAISMGLA 669
            A L++ F  TFI G   +F                G+FL T++MHFLSD++ETF  L         S +YPFA+MLA AG++LTM  D +I  +  + ++ +  +  E + +++  T         +SIGD+ILLI+ALCFHS FEGIAIG+S TK +AWR LWTI+LHKIFAAIAMGIALLRMIP RP   +  YSFAF ISSPIGV IGI IDATTQG IADWI+A+SM LA
Sbjct:   51 ACLVIIFVLTFISGVSPYFLKWSQGFLVLGTQFAGGVFLATALMHFLSDADETFRGLLTAEGESEPSPAYPFAYMLACAGFMLTMLADSVIAHIYSK-TQNDLELQGEDKSNQRSATT-------ETSIGDSILLIVALCFHSVFEGIAIGISETKSDAWRALWTITLHKIFAAIAMGIALLRMIPDRPLFSSITYSFAFAISSPIGVAIGIVIDATTQGSIADWIFALSMSLA 276          
The following BLAST results are available for this feature:
BLAST of FC877004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ZIP2_ARATH8.716e-6354.85Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2... [more]
ZIP11_ARATH2.901e-5852.56Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1DG10RM1 EHR Citrus clementina cDNA clone KN0AAN1DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877004 ID=FC877004; Name=FC877004; organism=Citrus clementina; type=EST; length=669bp
GCACGAGGCTAGTACGCACTTTTGCTGGTGGCGTTTCCCCCTACTTTTAT
CGATGGAACGAGAGTTTTCTTCTCCTCGGAACCCAATTTGCTGGCGGGGA
TTTTTCTTGGGACGTCTATGATGCATTTCTTGAGTGATTCCAATGAAACT
TTCGAAGATTTAACATCCAAAAGTTACCCTTTTGCATTCATGCTAGCATC
CGCGGGTTATCTTTTAACCATGTTCGGTGATTGCATAATCAATTTTGTTA
TAAAGCAGGGTAGCAAAAAAGAAACTAGAGTGGATGTTGAACAACAGAAA
AGTGAACAAGTGGGAACCGATGGTAATCCAGTTTTCTTCATGACAAGTTC
CATTGGAGACACCATTCTTCTCATTCTCGCCCTCTGTTTCCACTCATTTT
TCGAAGGCATTGCCATTGGAGTTTCAGCTACCAAGGGAGAGGCTTGGAGG
AATCTATGGACGATATCGTTGCACAAAATATTTGCAGCAATTGCAATGGG
AATTGCACTGCTGAGGATGATACCGAAGAGGCCATTTTTGCTAACTGCGG
CTTACTCATTTGCCTTCACGATTTCTAGTCCAATTGGTGTGGGGATAGGC
ATTGCCATTGACGCCACAACTCAAGGGCATATTGCTGATTGGATTTATGC
GATTTCAATGGGACTTGCT
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