FC877005

Overview
NameFC877005
Unique NameFC877005
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9541 contig Ccv1_Contig9541:304..1062. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877005 vs. ExPASy Swiss-Prot
Match: CHAC2_DANRE (Cation transport regulator-like protein 2 OS=Danio rerio GN=chac2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.260e-18
Identity = 58/143 (40.56%), Postives = 79/143 (55.24%), Query Frame = 3
Query:    9 DHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNTDYLFKLEKAMFDIGHE--DDYIIELANEVRK 431
            DHRG P  P R  TL +  E   WGVAY +  G E+E    EYL+ RE        V F+ + E  QP +   +++  + D   N  YLGPAPLE +A+QI  +VGP G NTDYLF+L  A+  +  E  DD++  L   V++
Sbjct:   38 DHRGVPGKPGRVVTLIEDPEGCVWGVAYKLPSGQEQE--VKEYLDYREKGGYGVITVTFHPKDEQQQP-MQDTLLYIGSCD---NPNYLGPAPLETIAQQIVKSVGPSGKNTDYLFELADALRQLVPEDLDDHLFSLERLVKQ 174          
BLAST of FC877005 vs. ExPASy Swiss-Prot
Match: CHAC2_XENLA (Cation transport regulator-like protein 2 OS=Xenopus laevis GN=chac2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.255e-18
Identity = 59/143 (41.26%), Postives = 80/143 (55.94%), Query Frame = 3
Query:    9 DHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNTDYLFKLEKAMFDIGHE--DDYIIELANEVRK 431
            DHRG P  P R  TL +  E   WGVAY +  G E+E  A  YL+ RE      + V FY +    QP    V+++  T D   N  YLGPAPLE++A QI  AVGP G NT+YLF+L  ++ ++  E  D+++  L   VR+
Sbjct:   38 DHRGVPGKPGRVVTLVEDPEGCVWGVAYRLPEGKEEEVKA--YLDFREKGGYRTSTVVFYPKDPSIQPF--NVLLYIGTCD---NPNYLGPAPLEDIAEQILNAVGPSGRNTEYLFELANSLRNLVPEDADEHLFSLEKLVRQ 173          
BLAST of FC877005 vs. ExPASy Swiss-Prot
Match: CHAC2_CHICK (Cation transport regulator-like protein 2 OS=Gallus gallus GN=chac2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.067e-17
Identity = 57/129 (44.19%), Postives = 72/129 (55.81%), Query Frame = 3
Query:    9 DHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNTDYLFKLEKAMFDIGHED 395
            DHRG P  P R  TL +  E   WGVAY +  G E E  A  YL+ RE      T V FY +    +P    V+++  T D   N  YLGPAPL+E+A QI  AVGP G NT+YLF+L  +M ++  ED
Sbjct:   38 DHRGVPGKPGRVVTLVEDPEGCVWGVAYRLPAGQECEVKA--YLDFREKGGYRTTTVVFYPKDSSIKPF--DVLLYIGTRD---NPNYLGPAPLQEIAEQIIDAVGPSGRNTEYLFELANSMRNLVPED 159          
BLAST of FC877005 vs. ExPASy Swiss-Prot
Match: CHAC2_HUMAN (Cation transport regulator-like protein 2 OS=Homo sapiens GN=CHAC2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.180e-16
Identity = 57/145 (39.31%), Postives = 80/145 (55.17%), Query Frame = 3
Query:    9 DHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNTDYLFKLEKAMFDIGHE--DDYIIELANEVRKEL 437
            DHRG P  P R  TL +      WGVAY +  G E+E  A  YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G NT+YLF+L  ++ ++  E  D+++  L   V++ L
Sbjct:   38 DHRGVPGKPGRVVTLVEDPAGCVWGVAYRLPVGKEEEVKA--YLDFREKGGYRTTTVIFYPKDPTTKPF--SVLLYIGTCD---NPDYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELANSIRNLVPEEADEHLFALEKLVKERL 175          
BLAST of FC877005 vs. ExPASy Swiss-Prot
Match: CHAC2_RAT (Cation transport regulator-like protein 2 OS=Rattus norvegicus GN=Chac2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.628e-16
Identity = 56/145 (38.62%), Postives = 78/145 (53.79%), Query Frame = 3
Query:    9 DHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNTDYLFKLEKAMFDIGHE--DDYIIELANEVRKEL 437
            DHRG P  P R  TL +      WGVAY +  G E+E     YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G NT+YLF+L  ++  +  E  D+++  L   V++ L
Sbjct:   38 DHRGVPGKPGRVVTLVEDPGGSVWGVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFYPKDSTTKPF--SVLLYIGTCD---NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSIRKLVPEDADEHLFSLEKLVKERL 175          
BLAST of FC877005 vs. ExPASy Swiss-Prot
Match: CHAC2_MOUSE (Cation transport regulator-like protein 2 OS=Mus musculus GN=Chac2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.628e-16
Identity = 56/145 (38.62%), Postives = 78/145 (53.79%), Query Frame = 3
Query:    9 DHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNTDYLFKLEKAMFDIGHE--DDYIIELANEVRKEL 437
            DHRG P  P R  TL +      WGVAY +  G E+E     YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G NT+YLF+L  ++  +  E  D+++  L   V++ L
Sbjct:   38 DHRGVPGKPGRVVTLVEDPGGSVWGVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFYPKDSTTKPF--SVLLYIGTCD---NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSVRKLVPEDADEHLFSLEKLVKERL 175          
BLAST of FC877005 vs. ExPASy Swiss-Prot
Match: CHAC1_MOUSE (Cation transport regulator-like protein 1 OS=Mus musculus GN=Chac1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 51/124 (41.13%), Postives = 66/124 (53.23%), Query Frame = 3
Query:   12 HRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERREC---EYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNTDYLFKLEKAM 374
            HRG+ + P R  TL +  E   WGVAY VRG  E+   A++YL  RE     YD+K  V FY +  P QP     + + +TP    N  YLGPAP E +A QI    G  G+N +YL +L   M
Sbjct:   72 HRGSDKMPGRVVTLLEDHEGCTWGVAYQVRG--EQVNEALKYLNVREAVLGGYDTKE-VTFYPQDTPDQPLT--ALAYVATP---QNPGYLGPAPEEVIATQILACRGFSGHNLEYLLRLADFM 187          
BLAST of FC877005 vs. ExPASy Swiss-Prot
Match: CHAC2_BOVIN (Cation transport regulator-like protein 2 OS=Bos taurus GN=CHAC2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 54/145 (37.24%), Postives = 75/145 (51.72%), Query Frame = 3
Query:    9 DHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNTDYLFKLEKAMFDIGHE--DDYIIELANEVRKEL 437
            DHRG P   +             WGVAY +  G E+E  A  YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G NT+YLF+L  +M  +  E  D+++  L   V++ L
Sbjct:   38 DHRGVPGKGS------------VWGVAYKLPVGKEEEVKA--YLDFREKGGYRTTTVIFYPKDSTTEPF--SVLLYIGTRD---NPNYLGPAPLEDIAEQIFNAAGPSGKNTEYLFELANSMRSLVPEDADEHLFSLEKLVKERL 163          
BLAST of FC877005 vs. ExPASy Swiss-Prot
Match: CHAC1_HUMAN (Cation transport regulator-like protein 1 OS=Homo sapiens GN=CHAC1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.059e-13
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 3
Query:   12 HRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECE---YDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNTDYLFKLEKAMFDIG--HEDDYIIELANEV 425
            HRG+ + P R  TL +  E   WGVAY V+G  E+   A++YL  RE     YD+K  V FY +  P QP     + + +TP    N  YLGPAP E +A QI    G  G+N +YL +L   M   G   +D+++  + + V
Sbjct:   71 HRGSDKMPGRVVTLLEDHEGCTWGVAYQVQG--EQVSKALKYLNVREAVLGGYDTKE-VTFYPQDAPDQPLKA--LAYVATPQ---NPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHLAAIVDAV 205          
BLAST of FC877005 vs. ExPASy Swiss-Prot
Match: CHAC1_DANRE (Cation transport regulator-like protein 1 OS=Danio rerio GN=chac1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 3
Query:   12 HRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDS--KTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNTDYLFKLEKAM 374
            HRG  + P R  TL +  +   WGVA+ V G   +E L  +YL  RE          VDF+  G    P     +V+ +TPD   N  YLGPA  EE+A QIA   G  G+N +YL +L + M
Sbjct:   51 HRGDDEMPGRVVTLIEEDDVCTWGVAFEVTGSQMEESL--KYLNVREAVRGGYLTRAVDFFPRGTNQPPVQA--LVYIATPD---NPIYLGPASTEEIASQIAVCKGNSGHNIEYLLRLAEFM 166          
The following BLAST results are available for this feature:
BLAST of FC877005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CHAC2_DANRE1.260e-1840.56Cation transport regulator-like protein 2 OS=Danio... [more]
CHAC2_XENLA6.255e-1841.26Cation transport regulator-like protein 2 OS=Xenop... [more]
CHAC2_CHICK1.067e-1744.19Cation transport regulator-like protein 2 OS=Gallu... [more]
CHAC2_HUMAN1.180e-1639.31Cation transport regulator-like protein 2 OS=Homo ... [more]
CHAC2_RAT2.628e-1638.62Cation transport regulator-like protein 2 OS=Rattu... [more]
CHAC2_MOUSE2.628e-1638.62Cation transport regulator-like protein 2 OS=Mus m... [more]
CHAC1_MOUSE2.720e-1341.13Cation transport regulator-like protein 1 OS=Mus m... [more]
CHAC2_BOVIN3.552e-1337.24Cation transport regulator-like protein 2 OS=Bos t... [more]
CHAC1_HUMAN6.059e-1337.06Cation transport regulator-like protein 1 OS=Homo ... [more]
CHAC1_DANRE3.927e-1238.21Cation transport regulator-like protein 1 OS=Danio... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1DG11RM1 EHR Citrus clementina cDNA clone KN0AAN1DG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877005 ID=FC877005; Name=FC877005; organism=Citrus clementina; type=EST; length=759bp
GCACGAGGGATCACAGGGGTACACCTCAACACCCGGCTAGAACTTGCACG
CTGGAAAAATCTCAAGAAACCATTTGTTGGGGTGTTGCTTATTGTGTCCG
AGGAGGTCCTGAAAAGGAAAGACTCGCTATGGAGTATTTGGAACGAAGAG
AATGCGAGTACGACTCTAAGACCCTTGTAGACTTTTACAGGGAAGGGGAG
CCTTCACAGCCGGCTCTAACTGGGGTTATAGTTTTCACGTCTACTCCAGA
CAAAGTATCAAACAAGTATTATCTGGGGCCTGCTCCATTGGAGGAAATGG
CTAGGCAAATTGCAACGGCTGTCGGACCCTGTGGAAACAATACAGACTAC
CTTTTCAAGTTGGAGAAGGCCATGTTTGATATTGGTCATGAGGACGACTA
CATAATAGAGCTGGCAAATGAAGTGAGGAAAGAGCTTGGAACTGCTGAAA
AAGGAATTCTCAAGGAGAGGAAGTTGGTTGGGTCATCATCCCGCATGCCG
CTCACAAAATCTCATATTCCAACCCTTCAACTGGGTCTACGCCCTGAGGC
GGTGGCCATGGATTCATAAGAACACAAGGCTGACAGACACCATAGGCCTA
GGGGACTAATCAAAGATATCAAGCAACGTAGCTAAACACAATCGCCATCA
TCTTTGTTTTCTTCTTTTTTTTTTTCAACCTTTTTCCTCACTTTTTAGGA
TGAGAACTGAGTGGTTTGGAATTGAGAGTTGACGGCTAACCATACCAAAT
ACATGTTGT
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