FC877008

Overview
NameFC877008
Unique NameFC877008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10402 contig Ccv1_Contig10402:1..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877008 vs. ExPASy Swiss-Prot
Match: FRS3_ARATH (Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.816e-66
Identity = 134/263 (50.95%), Postives = 168/263 (63.88%), Query Frame = 2
Query:   11 EMKASCSCQMFEYSGILCRHIXXXXXXXXXXXXPSHYILKRWTRNAKSSIGLDEQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKEXXXXXXXXXXXXXXISPPSSQVVLYSQEDSNKKTPPSVHEMIPSLWPWQEAMPHRFNLNDSGV---SVSDLNQPSMVPVSFHRDCGTPDSTVVLTCFKSMTWVIENKNSTSASKVAVINLKLQDYGKKPSGETEVQFRLTKTTLEPMLRSMAYISQQLSAPANK 790
            EM+A+CSCQMFE+SGILCRH+            P HYIL+RWTRNAKS + LDE  ++  G ++   R+N LC+EAIKYAE GA+  E YN+A+  L+E               +PPSS         S  KT  S  +  P LWP Q+ M  RFNLND G    SVSDLN P M PVS HRD   P++ V L C KS+TW +E+KN+    +VAVINLKL DY K PS + +V+F+L+  TLEPMLRSMAYIS+QLS+PAN+
Sbjct:  533 EMRANCSCQMFEHSGILCRHVLTVFTVTNILTLPPHYILRRWTRNAKSMVELDEHVSEN-GHDSSIHRYNHLCREAIKYAEEGAITAEAYNIALGQLREGGKKVSVVRKRIGRAAPPSSHG---GGIGSGDKTSLSAADTTPLLWPRQDEMIRRFNLNDGGARAQSVSDLNLPRMAPVSLHRDDTAPENMVALPCLKSLTWGMESKNTMPGGRVAVINLKLHDYRKFPSADMDVKFQLSSVTLEPMLRSMAYISEQLSSPANR 791          
BLAST of FC877008 vs. ExPASy Swiss-Prot
Match: FRS9_ARATH (Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.840e-19
Identity = 51/100 (51.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:   11 EMKASCSCQMFEYSGILCRHIXXXXXXXXXXXXPSHYILKRWTRNAKSSIGLDEQNTDTQGI-ETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKE 307
            E+KA+CSCQMFEYSGI+CRHI            PS Y+L+RWT+ AK   G +EQ   + G  E+L L FN L QEA KY E GA +++ Y VA+ AL E
Sbjct:  339 EVKANCSCQMFEYSGIICRHILAVFSAKNVLALPSRYLLRRWTKEAKIR-GTEEQPEFSNGCQESLNLCFNSLRQEATKYVEEGAKSIQIYKVAMDALDE 437          
BLAST of FC877008 vs. ExPASy Swiss-Prot
Match: FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.559e-17
Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 2
Query:   11 EMKASCSCQMFEYSGILCRHIXXXXXXXXXXXXPSHYILKRWTRNAKSSIGLDEQNTDTQG--IETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKE 307
            EM+A+CSCQMFE+SGI+CRHI            P +YILKRWTRNAKSS+  D+ N       +E+ T+R+N L  +A  + +    ++ T +VA+ AL+E
Sbjct:  588 EMRANCSCQMFEFSGIICRHILAVFRVTNLLTLPPYYILKRWTRNAKSSVIFDDYNLHAYANYLESHTVRYNTLRHKASNFVQEAGKSLYTCDVAVVALQE 688          
BLAST of FC877008 vs. ExPASy Swiss-Prot
Match: FHY3_ARATH (Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.240e-15
Identity = 39/101 (38.61%), Postives = 60/101 (59.41%), Query Frame = 2
Query:    2 HEAEMKASCSCQMFEYSGILCRHIXXXXXXXXXXXXPSHYILKRWTRNAKSSIGLDEQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALK 304
            ++ + + SC C++FEY G LCRH             PS YILKRWT++AKS       + + Q ++T  LR+N LC+ A+K  E  +L+ E+YN+A  A++
Sbjct:  569 NQTKAEVSCICRLFEYKGYLCRHTLNVLQCCHLSSIPSQYILKRWTKDAKSR----HFSGEPQQLQTRLLRYNDLCERALKLNEEASLSQESYNIAFLAIE 665          
BLAST of FC877008 vs. ExPASy Swiss-Prot
Match: FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.693e-14
Identity = 43/126 (34.13%), Postives = 61/126 (48.41%), Query Frame = 2
Query:   26 CSCQMFEYSGILCRHIXXXXXXXXXXXXPSHYILKRWTRNAKSSIGLDEQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKEXXXXXXXXXXXXXXISPPSSQVVLYSQEDSNK 403
            C C+MFEY G LCRH             P  YILKRWT++AKS +   E       I+T   R+N LC  A + +E G ++ E YN+A+  L E              I+  +SQ+   + E+ N+
Sbjct:  568 CFCRMFEYKGFLCRHALMILQMCGFASIPPQYILKRWTKDAKSGVLAGE---GADQIQTRVQRYNDLCSRATELSEEGCVSEENYNIALRTLVETLKNCVDMNNARNNITESNSQLNNGTHEEENQ 690          
BLAST of FC877008 vs. ExPASy Swiss-Prot
Match: FRS1_ARATH (Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=FRS1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.973e-13
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 2
Query:   26 CSCQMFEYSGILCRHIXXXXXXXXXXXXPSHYILKRWTRNAKSSIGLDEQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKE 307
            CSC++FE  G LCRH             PS Y+LKRWT++AKS   ++   TD +   T   R+  LC  ++K +E  +L+ E+YN  ++ L E
Sbjct:  453 CSCRLFELKGFLCRHAMIVLQMSGELSIPSQYVLKRWTKDAKSREVMESDQTDVE--STKAQRYKDLCLRSLKLSEEASLSEESYNAVVNVLNE 544          
BLAST of FC877008 vs. ExPASy Swiss-Prot
Match: FRS7_ARATH (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.776e-13
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 2
Query:    8 AEMKASCSCQMFEYSGILCRHIXXXXXXXXXXXXPSHYILKRWTRNAKSSIGLD-EQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKE 307
            + + ASCSCQMFEY G+LCRHI            PS YIL RWT+NA+     D E    +Q ++ L +    L + A KY E G  ++E Y +A   ++E
Sbjct:  657 SNLNASCSCQMFEYEGLLCRHILKVFNLLDIRELPSRYILHRWTKNAEFGFVRDVESGVTSQDLKALMIW--SLREAASKYIEFGTSSLEKYKLAYEIMRE 755          
BLAST of FC877008 vs. ExPASy Swiss-Prot
Match: FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.492e-12
Identity = 38/101 (37.62%), Postives = 54/101 (53.47%), Query Frame = 2
Query:    8 AEMKASCSCQMFEYSGILCRHIXXXXXXXXXXXXPSHYILKRWTRNAKSSIGLD-EQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKE 307
            + + +SCSCQMFE+ G+LCRHI            PS YIL RWT+NA+     D E     Q ++ L +    L + A KY E G  ++E Y +A   ++E
Sbjct:  681 SNLNSSCSCQMFEHEGLLCRHILKVFNLLDIRELPSRYILHRWTKNAEFGFVRDMESGVSAQDLKALMVW--SLREAASKYIEFGTSSLEKYKLAYEIMRE 779          
BLAST of FC877008 vs. ExPASy Swiss-Prot
Match: FRS4_ARATH (Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.669e-11
Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = 2
Query:   26 CSCQMFEYSGILCRHIXXXXXXXXXXXXPSHYILKRWTRNAKSSIGLDEQNTDTQGIETLTLRFNKLCQEAIKYAEVGALAVETYNVAISALKE 307
            CSC+ FEY G LCRH             P +Y+L+RWT  A++     + + + + +++   RFN LC+ AI   E G+L+ E+Y+VA+ A+KE
Sbjct:  503 CSCRSFEYKGYLCRHAIVVLQMSGVFTIPINYVLQRWTNAARNR---HQISRNLELVQSNIRRFNDLCRRAIILGEEGSLSQESYDVAMFAMKE 593          
The following BLAST results are available for this feature:
BLAST of FC877008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
FRS3_ARATH1.816e-6650.95Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis tha... [more]
FRS9_ARATH2.840e-1951.00Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis tha... [more]
FRS5_ARATH1.559e-1744.55Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis tha... [more]
FHY3_ARATH7.240e-1538.61Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidops... [more]
FAR1_ARATH4.693e-1434.13Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis... [more]
FRS1_ARATH3.973e-1337.23Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis tha... [more]
FRS7_ARATH6.776e-1339.60Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis tha... [more]
FRS12_ARATH7.492e-1237.62Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis th... [more]
FRS4_ARATH1.669e-1137.23Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3CD05RM1 EHR Citrus clementina cDNA clone KN0AAN3CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877008 ID=FC877008; Name=FC877008; organism=Citrus clementina; type=EST; length=813bp
GCACGAGGCTGAGATGAAAGCGAGTTGCAGCTGTCAAATGTTTGAATACT
CTGGAATTCTCTGTAGGCATATATTAACTGTTTTCACTGTAACAAATGTT
CTTACCCTTCCAAGCCATTATATATTAAAGAGATGGACAAGAAATGCCAA
ATCTTCGATTGGCCTAGATGAACAGAATACAGATACACAAGGTATTGAGA
CTCTCACCTTACGCTTCAACAAACTATGTCAAGAAGCAATCAAATATGCT
GAGGTTGGGGCACTAGCAGTGGAGACTTACAACGTGGCGATTAGTGCTCT
AAAGGAAGCTGGGAAAAAGGTTCTTGCAGCGAAGAAGAATGTTGCTAAAA
TCTCTCCTCCAAGCTCTCAAGTTGTATTGTATTCTCAGGAAGACAGTAAC
AAGAAGACACCCCCATCAGTTCATGAAATGATCCCATCATTATGGCCATG
GCAGGAGGCAATGCCTCATCGCTTTAATTTAAATGATTCTGGAGTTTCTG
TTTCCGATTTGAATCAACCCAGCATGGTGCCTGTGTCTTTTCACCGGGAT
TGTGGCACCCCTGACAGTACGGTTGTTCTAACTTGTTTTAAGTCCATGAC
GTGGGTCATAGAAAATAAGAATTCGACCTCTGCCAGTAAAGTAGCTGTCA
TCAACTTGAAGCTGCAAGATTATGGCAAGAAGCCTTCAGGAGAGACTGAG
GTGCAGTTCAGACTAACAAAAACGACTTTGGAACCTATGTTGAGATCAAT
GGCCTACATCAGTCAACAACTCTCAGCACCTGCCAATAAAGGTGGCTGTC
ATCAATCTGAAAC
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