FC877013

Overview
NameFC877013
Unique NameFC877013
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length820
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877013_ssr59 microsatellite FC877013_ssr59:59..79. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10441 contig Ccv1_Contig10441:1..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.149e-100
Identity = 187/226 (82.74%), Postives = 201/226 (88.94%), Query Frame = 1
Query:  151 TENGHQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA---TSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAT 819
            T+NG+QNG LE LC N        D L+WGV AE +KGSHL+EVKRMVA+YRKPVV LGGETLT+AQVA+IA   T    VELSESAR GVKASSDWVM+SM+KGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTE+ HTLPHSATRAAMLVR+NTLLQGYSGIRFEILEAIT+LLN+NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAT
Sbjct:    5 TKNGYQNGSLESLCVNQR------DPLSWGVAAEAMKGSHLDEVKRMVADYRKPVVKLGGETLTIAQVASIAGHDTGDVKVELSESARPGVKASSDWVMDSMDKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTETCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITRLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAT 224          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PAL1_PEA (Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=PAL1 PE=2 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 4.085e-98
Identity = 185/223 (82.96%), Postives = 196/223 (87.89%), Query Frame = 1
Query:  166 QNGGLEGLC----KNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS--TNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 816
            +N G E  C    KNNN   +S D LNWGV AE +KGSHL+EVKRMV EYRKPVV LGGETLT++QVAAIA       VELSESAR GVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTESSHTLPH+ATRAAMLVR+NTLLQGYSGIRFEILEAITKL+N+N+TPCL LRGTITASGDLVPLSYIAGLLTGRPNSKA
Sbjct:   10 KNNGYESFCVTNAKNNNMKVNSADPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDHGVKVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNVTPCL-LRGTITASGDLVPLSYIAGLLTGRPNSKA 231          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PAL5_SOLLC (Phenylalanine ammonia-lyase OS=Solanum lycopersicum GN=PAL5 PE=3 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 5.899e-97
Identity = 181/226 (80.09%), Postives = 198/226 (87.61%), Query Frame = 1
Query:  154 ENGHQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA-----TSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 816
            +NGH NG    LCK +    +  D LNW + AE+L+GSHL+EVK+MV E+RKP+V LGGETLTVAQVA+IA     ++   VELSESAR GVKASSDWVM+SM KGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAG+FGNGTESSHTLPHSATRAAMLVR+NTLLQGYSGIRFEILEAITKL+N NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA
Sbjct:    7 QNGHVNGEAMDLCKKS---INVNDPLNWEMAAESLRGSHLDEVKKMVDEFRKPIVKLGGETLTVAQVASIANVDNKSNGVKVELSESARAGVKASSDWVMDSMGKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 229          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PAL1_SOYBN (Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PAL1 PE=3 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 7.704e-97
Identity = 184/223 (82.51%), Postives = 193/223 (86.55%), Query Frame = 1
Query:  157 NGHQNGGL-EGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA--TSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 816
            NGHQNG       K NN      D LNWG  AE +KGSHL+EVKRMVAEYRKPVV LGGETLT+AQVAA+A       VELSESAREGVKASS+WVM SMN GTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTESSHTLPH+ATRAAMLVR+NTLLQGYSGIRFEILEAITKLLN+N+TPCL LRGTITASGDLVPLSYIAGLLTGRPNSKA
Sbjct:    5 NGHQNGSFCLSTAKGNN------DPLNWGAAAEAMKGSHLDEVKRMVAEYRKPVVRLGGETLTIAQVAAVAGHDHGVAVELSESAREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLDLRGTITASGDLVPLSYIAGLLTGRPNSKA 221          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PALY_TRISU (Phenylalanine ammonia-lyase OS=Trifolium subterraneum GN=PAL1 PE=3 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 1.006e-96
Identity = 179/207 (86.47%), Postives = 189/207 (91.30%), Query Frame = 1
Query:  199 NNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT-SSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 816
            NN   ++ D LNWGV AE +KGSHL+EVKRMV EYRKPVV LGGETLT++QVAAIA      VELSESAR GVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTES+HTLPH+ATRAAMLVR+NTLLQGYSGIRFEILEAITKLLN+NITPCLPLRGTITASGDLVPLSYIAGLLTGR NSKA
Sbjct:   27 NNMKVNAADPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDGATVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRSNSKA 233          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PALY_HELAN (Phenylalanine ammonia-lyase OS=Helianthus annuus GN=PAL PE=2 SV=2)

HSP 1 Score: 352.443 bits (903), Expect = 1.716e-96
Identity = 184/226 (81.42%), Postives = 193/226 (85.40%), Query Frame = 1
Query:  154 ENG-HQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS----TNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 816
            ENG H NG   G C          D LNWGV AE L GSHL+EVK+MV E+RKPVV LGGETLTV+QVA I+ +       VELSE+AR GVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVR+NTLLQGYSGIRFEILEAITK LN+NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA
Sbjct:    2 ENGTHVNGSANGFCIK--------DPLNWGVAAEALTGSHLDEVKKMVGEFRKPVVKLGGETLTVSQVAGISAAGDGNMVKVELSEAARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 219          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PAL1_TOBAC (Phenylalanine ammonia-lyase OS=Nicotiana tabacum GN=TPA1 PE=2 SV=1)

HSP 1 Score: 351.288 bits (900), Expect = 3.824e-96
Identity = 182/226 (80.53%), Postives = 197/226 (87.17%), Query Frame = 1
Query:  157 NGHQNGGLE-GLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT-----SSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 816
            NGH NGG    LCK       S D LNW + AE+L+GSHL+EVK+MV+E+RKP+V LGGE+LTVAQVAAIA      +   VELSE AR GVKASSDWVM+SMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAG+FGNGTE+SHTLPHSATRAAMLVR+NTLLQGYSGIRFEILEAITKL+N NITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA
Sbjct:    4 NGHVNGGENFELCKK------SADPLNWEMAAESLRGSHLDEVKKMVSEFRKPMVKLGGESLTVAQVAAIAVRDKSANGVKVELSEEARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGVFGNGTETSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 223          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PALY_DIGLA (Phenylalanine ammonia-lyase OS=Digitalis lanata PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 5.521e-95
Identity = 179/228 (78.51%), Postives = 190/228 (83.33%), Query Frame = 1
Query:  139 IGATTENGHQNGGLEGLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNV--ELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 816
            + A  ENGH          NN +     D LNW   AE LKGSHL+EVKRMV E+RK VV LGGETLT++QVAAIA     V  +L+ES+R GVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTK GGALQKELIRFLNAGIFGNGTES+HTLPHSATRAAMLVR+NTLLQGYSGIRFEILE ITK LNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA
Sbjct:    1 MAAVVENGHHG--------NNGFCVKQNDPLNWVAAAEELKGSHLDEVKRMVEEFRKTVVKLGGETLTISQVAAIAARDNEVAVQLAESSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESTHTLPHSATRAAMLVRINTLLQGYSGIRFEILETITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 220          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PAL1_PRUAV (Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=PAL1 PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 5.521e-95
Identity = 180/232 (77.59%), Postives = 196/232 (84.48%), Query Frame = 1
Query:  133 MEIGATTENGHQNGGLE--GLCKNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIAT--SSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 816
            M   +  +NGH+NG +E   LC          D LNWGV AETLKGSHL+EVKRMVAEYRKPVV LGGE+LT++QVAAIAT  S   VELSESAR GVKASSDWVM+SM+KGTDSYGVTTGFGATSHRRTK G ALQKELIRFLNAG+FG+  ES HTLPH ATRAAMLVR+NTLLQGYSGIRFEILE ITK LN+N+TPCLPLRGTITASGDLVPLSYIAG+LTGRPNSKA
Sbjct:    1 MATNSIKQNGHKNGSVELPELCIKK-------DPLNWGVAAETLKGSHLDEVKRMVAEYRKPVVKLGGESLTISQVAAIATHDSGVKVELSESARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGAALQKELIRFLNAGVFGSTKESGHTLPHQATRAAMLVRINTLLQGYSGIRFEILEVITKFLNNNVTPCLPLRGTITASGDLVPLSYIAGMLTGRPNSKA 225          
BLAST of FC877013 vs. ExPASy Swiss-Prot
Match: PAL2_PEA (Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=PAL2 PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 7.211e-95
Identity = 183/230 (79.57%), Postives = 196/230 (85.22%), Query Frame = 1
Query:  145 ATTENGHQNGGLEGLC----KNNNYNYSSGDALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSS--TNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKA 816
            A T+N   N G +  C    KNNN   S  D LNWGV AE +KGSHL+EVKRMV EYRKPVV LGGETLT++QVAAIA       VELSESAR GVKASSDWVMESMNKGTDSYGVTT  GATSHRRTK GGALQKELIRFLNAGIFGNG+ES+HTLPH+ATRAAMLVR+NTLLQGYSGIRFEILEAITKL+N+N+TPCL LRGTITASGDLVPLSYIAGLLTGRPNSKA
Sbjct:    7 AITKN---NSGYDSFCLTNAKNNNIKVSDSDPLNWGVAAEAMKGSHLDEVKRMVDEYRKPVVRLGGETLTISQVAAIAAHDHGVKVELSESARAGVKASSDWVMESMNKGTDSYGVTTVHGATSHRRTKQGGALQKELIRFLNAGIFGNGSESTHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNVTPCL-LRGTITASGDLVPLSYIAGLLTGRPNSKA 232          
The following BLAST results are available for this feature:
BLAST of FC877013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PALY_POPTR1.149e-10082.74Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]
PAL1_PEA4.085e-9882.96Phenylalanine ammonia-lyase 1 OS=Pisum sativum GN=... [more]
PAL5_SOLLC5.899e-9780.09Phenylalanine ammonia-lyase OS=Solanum lycopersicu... [more]
PAL1_SOYBN7.704e-9782.51Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PA... [more]
PALY_TRISU1.006e-9686.47Phenylalanine ammonia-lyase OS=Trifolium subterran... [more]
PALY_HELAN1.716e-9681.42Phenylalanine ammonia-lyase OS=Helianthus annuus G... [more]
PAL1_TOBAC3.824e-9680.53Phenylalanine ammonia-lyase OS=Nicotiana tabacum G... [more]
PALY_DIGLA5.521e-9578.51Phenylalanine ammonia-lyase OS=Digitalis lanata PE... [more]
PAL1_PRUAV5.521e-9577.59Phenylalanine ammonia-lyase 1 OS=Prunus avium GN=P... [more]
PAL2_PEA7.211e-9579.57Phenylalanine ammonia-lyase 2 OS=Pisum sativum GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3CD12RM1 EHR Citrus clementina cDNA clone KN0AAN3CD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877013 ID=FC877013; Name=FC877013; organism=Citrus clementina; type=EST; length=820bp
GCACGAGGTAGACTTCAGAATTTCCTTTAGCTCATTCATTCTTCATCACT
CCCATTCATTCTTCTTCTTCTTCTTCTTCTTTCTACAGTTTTGGTATTTT
TTGTAATTGCAGTAACATTTACGTAAAACGATATGGAGATAGGTGCCACT
ACTGAGAATGGTCACCAGAACGGTGGCCTGGAGGGTTTGTGCAAGAATAA
CAATTACAATTACAGTTCTGGGGATGCGTTGAACTGGGGAGTGATGGCGG
AGACGTTGAAGGGGAGCCATTTGGAGGAAGTGAAGCGTATGGTGGCGGAG
TACAGGAAGCCGGTGGTCAACCTCGGTGGTGAGACGTTGACCGTAGCACA
GGTGGCTGCCATTGCCACGTCCTCTACGAATGTGGAGCTGTCGGAATCTG
CCAGGGAAGGCGTCAAGGCCAGCAGTGATTGGGTGATGGAGAGCATGAAT
AAGGGTACCGACAGTTACGGCGTTACCACTGGCTTTGGTGCCACTTCTCA
TCGGAGAACCAAGAACGGCGGTGCTCTTCAGAAGGAGCTCATTAGATTTT
TGAACGCTGGAATCTTTGGAAACGGAACAGAGTCATCTCACACGCTACCT
CACTCAGCAACAAGGGCAGCCATGCTTGTGAGGGTTAACACTCTTCTCCA
GGGCTACTCCGGCATCCGATTTGAAATCCTGGAAGCGATCACAAAGCTGC
TCAATCACAACATCACTCCATGCCTCCCTCTTCGCGGCACAATCACTGCT
TCAGGGGATCTGGTTCCTCTTTCCTACATTGCCGGACTGCTCACCGGCCG
GCCCAATTCTAAGGCCACCG
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