FC877018
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877018 vs. ExPASy Swiss-Prot
Match: SGS3_SOLLC (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1) HSP 1 Score: 256.144 bits (653), Expect = 1.186e-67 Identity = 126/217 (58.06%), Postives = 165/217 (76.04%), Query Frame = 2 Query: 8 GTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDHIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNAEDYELTAEEIAKFITVQDKEMEEFVAARDRLIRFHGDKMDAMMRRH 658 G +RD+W + R F+ GGKR LYG+MA K+D+D FNQH GK+K KFEMRSY E V N +QM EDNQQLI+ KN+ K Q +KALE + S+VSEK R+T+EEN+IV+ +TKM HEQ KEEM+FQEQ FKD I+IIH+AR +E+NFEK QQ++RE VKQS AN + ED+ + AE++AKFI +QDKEMEEFV R+ L+R H D++ A+ R++ Sbjct: 383 GRNRDAWERRSAR--FYPGGKRLLYGYMADKKDIDNFNQHSAGKSKLKFEMRSYKEAVWNPAKQMREDNQQLIWFKNKAAKHQMQAKALEESLSLVSEKHRQTLEENKIVRLKTKMHHEQIKEEMEFQEQFFKDQIKIIHDARTAREDNFEKTQQEQREMVKQSNANTASVEDHRVRAEKVAKFIKLQDKEMEEFVEERENLMRTHDDRIAALRRKY 597
BLAST of FC877018 vs. ExPASy Swiss-Prot
Match: SGS3_ARATH (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1) HSP 1 Score: 246.514 bits (628), Expect = 9.397e-65 Identity = 125/220 (56.82%), Postives = 161/220 (73.18%), Query Frame = 2 Query: 8 GTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDHIRIIHEARDEKEENFEKLQQQEREKV---KQSIANPKNAEDYELTAEEIAKFITVQDKEMEEFVAARDRLIRFHGDKMDAMMRRH 658 G DR +W +R +F +GG RQLYGF+A K+DLD+FNQH GKT+ KFE++SY EMVV ++RQ+SEDNQQL Y KN++ K+ +H+K LE + I+SEKLR T E+NRIV+QRTKMQHEQN+EEMD ++ F D I+ IHE RD KEENFE LQQQER KV +Q NP + +D AEE++ FI Q+KEMEEFV R+ LI+ KM+ M +RH Sbjct: 380 GLDRIAWGQ--KRSMF-SGGVRQLYGFLATKQDLDIFNQHSQGKTRLKFELKSYQEMVVKELRQISEDNQQLNYFKNKLSKQNKHAKVLEESLEIMSEKLRRTAEDNRIVRQRTKMQHEQNREEMDAHDRFFMDSIKQIHERRDAKEENFEMLQQQERAKVVGQQQQNINPSSNDDCRKRAEEVSSFIEFQEKEMEEFVEEREMLIKDQEKKMEDMKKRH 596
BLAST of FC877018 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSJ (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica GN=SGS3 PE=2 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 2.166e-61 Identity = 113/208 (54.33%), Postives = 159/208 (76.44%), Query Frame = 2 Query: 11 TDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDHIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNAEDYELTAEEIAKFITVQDKEMEEFVAARDRLIRFHGDK 634 TDR++WN++++ V F GGKRQLYGF+A K+D++ FN+HCHGK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + ++EM +QE+ F D I IH+A +EKE FEKL Q+ER K +QS + + ED E+I FI Q K++EEF A RD+LI+ H +K Sbjct: 360 TDRNTWNSAHK-VTFLPGGKRQLYGFLATKDDMETFNRHCHGKSRLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKATEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEK 566
BLAST of FC877018 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSI (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica GN=SGS3 PE=3 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 8.232e-61 Identity = 112/208 (53.85%), Postives = 158/208 (75.96%), Query Frame = 2 Query: 11 TDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDHIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNAEDYELTAEEIAKFITVQDKEMEEFVAARDRLIRFHGDK 634 TDR++WN++++ V F GGKRQLYGF+A K+D++ FN+HCHGK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + ++EM +QE+ F D I IH+ +EKE FEKL Q+ER K +QS + + ED E+I FI Q K++EEF A RD+LI+ H +K Sbjct: 360 TDRNTWNSAHK-VTFLPGGKRQLYGFLATKDDMETFNRHCHGKSRLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKPTEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEK 566
BLAST of FC877018 vs. ExPASy Swiss-Prot
Match: SGS3_MAIZE (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3 PE=1 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 1.607e-56 Identity = 108/211 (51.18%), Postives = 154/211 (72.99%), Query Frame = 2 Query: 2 HEGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDHIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNAEDYELTAEEIAKFITVQDKEMEEFVAARDRLIRFHGDK 634 ++GTDR+SW+ R+V F GGKRQLYGF+A KED++ FN+HCHGK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK ++ SKA+E + +V++KLRET+EEN V+ + K +H + +EEM QE++F I IH+A ++KE+ FEKL Q+ER K ++ + +D +L E + KFI Q K++ EF RD LI+ H DK Sbjct: 346 NQGTDRNSWHL--RKVRFVPGGKRQLYGFLANKEDMEAFNKHCHGKSRLKYEMRSYNEMVVIQMKQMSEDNQQLNYLKNKMVKTEQRSKAVEESLGVVTQKLRETIEENIFVRSKAKEKHMEYEEEMKSQEEIFHGLIEDIHKATEDKEKQFEKLLQEERSKARRFDVDSGTMKDRQLRKEYVQKFIDCQVKDVAEFEVERDELIKVHEDK 554 The following BLAST results are available for this feature:
BLAST of FC877018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877018 ID=FC877018; Name=FC877018; organism=Citrus clementina; type=EST; length=673bpback to top |