FC877018

Overview
NameFC877018
Unique NameFC877018
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5800 contig Ccv1_Contig5800:1360..2032. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877018 vs. ExPASy Swiss-Prot
Match: SGS3_SOLLC (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.186e-67
Identity = 126/217 (58.06%), Postives = 165/217 (76.04%), Query Frame = 2
Query:    8 GTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDHIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNAEDYELTAEEIAKFITVQDKEMEEFVAARDRLIRFHGDKMDAMMRRH 658
            G +RD+W   + R  F+ GGKR LYG+MA K+D+D FNQH  GK+K KFEMRSY E V N  +QM EDNQQLI+ KN+  K Q  +KALE + S+VSEK R+T+EEN+IV+ +TKM HEQ KEEM+FQEQ FKD I+IIH+AR  +E+NFEK QQ++RE VKQS AN  + ED+ + AE++AKFI +QDKEMEEFV  R+ L+R H D++ A+ R++
Sbjct:  383 GRNRDAWERRSAR--FYPGGKRLLYGYMADKKDIDNFNQHSAGKSKLKFEMRSYKEAVWNPAKQMREDNQQLIWFKNKAAKHQMQAKALEESLSLVSEKHRQTLEENKIVRLKTKMHHEQIKEEMEFQEQFFKDQIKIIHDARTAREDNFEKTQQEQREMVKQSNANTASVEDHRVRAEKVAKFIKLQDKEMEEFVEERENLMRTHDDRIAALRRKY 597          
BLAST of FC877018 vs. ExPASy Swiss-Prot
Match: SGS3_ARATH (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.397e-65
Identity = 125/220 (56.82%), Postives = 161/220 (73.18%), Query Frame = 2
Query:    8 GTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDHIRIIHEARDEKEENFEKLQQQEREKV---KQSIANPKNAEDYELTAEEIAKFITVQDKEMEEFVAARDRLIRFHGDKMDAMMRRH 658
            G DR +W    +R +F +GG RQLYGF+A K+DLD+FNQH  GKT+ KFE++SY EMVV ++RQ+SEDNQQL Y KN++ K+ +H+K LE +  I+SEKLR T E+NRIV+QRTKMQHEQN+EEMD  ++ F D I+ IHE RD KEENFE LQQQER KV   +Q   NP + +D    AEE++ FI  Q+KEMEEFV  R+ LI+    KM+ M +RH
Sbjct:  380 GLDRIAWGQ--KRSMF-SGGVRQLYGFLATKQDLDIFNQHSQGKTRLKFELKSYQEMVVKELRQISEDNQQLNYFKNKLSKQNKHAKVLEESLEIMSEKLRRTAEDNRIVRQRTKMQHEQNREEMDAHDRFFMDSIKQIHERRDAKEENFEMLQQQERAKVVGQQQQNINPSSNDDCRKRAEEVSSFIEFQEKEMEEFVEEREMLIKDQEKKMEDMKKRH 596          
BLAST of FC877018 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSJ (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica GN=SGS3 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.166e-61
Identity = 113/208 (54.33%), Postives = 159/208 (76.44%), Query Frame = 2
Query:   11 TDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDHIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNAEDYELTAEEIAKFITVQDKEMEEFVAARDRLIRFHGDK 634
            TDR++WN++++ V F  GGKRQLYGF+A K+D++ FN+HCHGK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + ++EM +QE+ F D I  IH+A +EKE  FEKL Q+ER K +QS  +  + ED     E+I  FI  Q K++EEF A RD+LI+ H +K
Sbjct:  360 TDRNTWNSAHK-VTFLPGGKRQLYGFLATKDDMETFNRHCHGKSRLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKATEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEK 566          
BLAST of FC877018 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSI (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica GN=SGS3 PE=3 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.232e-61
Identity = 112/208 (53.85%), Postives = 158/208 (75.96%), Query Frame = 2
Query:   11 TDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDHIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNAEDYELTAEEIAKFITVQDKEMEEFVAARDRLIRFHGDK 634
            TDR++WN++++ V F  GGKRQLYGF+A K+D++ FN+HCHGK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK+++HSK +E T S+V++KLRETMEEN IV+ + K +H + ++EM +QE+ F D I  IH+  +EKE  FEKL Q+ER K +QS  +  + ED     E+I  FI  Q K++EEF A RD+LI+ H +K
Sbjct:  360 TDRNTWNSAHK-VTFLPGGKRQLYGFLATKDDMETFNRHCHGKSRLKYEMRSYNEMVVTQMKQMSEDNQQLNYLKNKMVKKEQHSKLVEDTLSVVTQKLRETMEENTIVRNKAKEKHLEYEKEMKYQEEFFHDQIEKIHKPTEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEK 566          
BLAST of FC877018 vs. ExPASy Swiss-Prot
Match: SGS3_MAIZE (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.607e-56
Identity = 108/211 (51.18%), Postives = 154/211 (72.99%), Query Frame = 2
Query:    2 HEGTDRDSWNNSNRRVLFHAGGKRQLYGFMALKEDLDVFNQHCHGKTKQKFEMRSYHEMVVNQIRQMSEDNQQLIYLKNRVVKEQRHSKALEATFSIVSEKLRETMEENRIVKQRTKMQHEQNKEEMDFQEQLFKDHIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNAEDYELTAEEIAKFITVQDKEMEEFVAARDRLIRFHGDK 634
            ++GTDR+SW+   R+V F  GGKRQLYGF+A KED++ FN+HCHGK++ K+EMRSY+EMVV Q++QMSEDNQQL YLKN++VK ++ SKA+E +  +V++KLRET+EEN  V+ + K +H + +EEM  QE++F   I  IH+A ++KE+ FEKL Q+ER K ++   +    +D +L  E + KFI  Q K++ EF   RD LI+ H DK
Sbjct:  346 NQGTDRNSWHL--RKVRFVPGGKRQLYGFLANKEDMEAFNKHCHGKSRLKYEMRSYNEMVVIQMKQMSEDNQQLNYLKNKMVKTEQRSKAVEESLGVVTQKLRETIEENIFVRSKAKEKHMEYEEEMKSQEEIFHGLIEDIHKATEDKEKQFEKLLQEERSKARRFDVDSGTMKDRQLRKEYVQKFIDCQVKDVAEFEVERDELIKVHEDK 554          
The following BLAST results are available for this feature:
BLAST of FC877018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SGS3_SOLLC1.186e-6758.06Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum ... [more]
SGS3_ARATH9.397e-6556.82Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidop... [more]
SGS3_ORYSJ2.166e-6154.33Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
SGS3_ORYSI8.232e-6153.85Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
SGS3_MAIZE1.607e-5651.18Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1DH09RM1 EHR Citrus clementina cDNA clone KN0AAN1DH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877018 ID=FC877018; Name=FC877018; organism=Citrus clementina; type=EST; length=673bp
GCACGAGGGAACAGATAGAGATTCGTGGAATAACAGTAACCGCAGAGTTT
TATTCCATGCTGGTGGAAAGCGCCAACTTTATGGTTTCATGGCACTGAAA
GAAGACTTGGATGTCTTCAACCAGCATTGCCACGGTAAAACAAAGCAGAA
ATTTGAGATGAGATCATACCACGAGATGGTTGTGAATCAGATCAGGCAAA
TGAGCGAGGATAATCAACAGCTCATATATTTGAAGAATAGGGTTGTGAAA
GAACAAAGGCACTCAAAAGCTCTTGAAGCAACTTTTAGTATTGTGAGTGA
GAAGCTGCGTGAAACCATGGAGGAAAACCGCATTGTGAAACAAAGGACCA
AAATGCAACATGAGCAGAACAAAGAAGAGATGGATTTTCAAGAGCAGCTC
TTCAAGGACCACATTAGAATAATTCATGAAGCAAGGGATGAAAAGGAAGA
GAATTTTGAGAAGCTGCAACAACAGGAACGAGAGAAGGTGAAACAATCAA
TTGCTAATCCTAAAAACGCTGAGGACTACGAGCTCACGGCAGAGGAAATT
GCCAAGTTCATAACGGTTCAAGACAAAGAAATGGAAGAGTTTGTGGCAGC
AAGGGACCGGCTGATAAGATTTCACGGTGATAAGATGGATGCAATGATGC
GGAGGCATTGAGGAGGAAGAGGT
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