FC877023
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877023 vs. ExPASy Swiss-Prot
Match: SPF30_XENTR (Survival of motor neuron-related-splicing factor 30 OS=Xenopus tropicalis GN=smndc1 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.250e-15 Identity = 76/237 (32.07%), Postives = 109/237 (45.99%), Query Frame = 3 Query: 96 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKR--KKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TRSKTKK 791 E+L L+ YK QLQQV L + N + ++K+L EVI LT++LL++ SET A ++ + SGS + VG K AV+S+DG+WY+A IE I NG +T+ +GN E N+RPV E K E S +LP +++ AA+R KK A K R ++LE + ++ WQQF SK KK Sbjct: 3 EDLAKQLAGYKAQLQQVESALTANGENEDLLKLKKDLQEVIELTKDLLSS------QPSETADDAC---------DDMSASGS-----QSWKVGEKCMAVWSDDGQWYEAEIEEIDEENGTAAITFAGYGNAEVTSLLNLRPVE---EGRKAKE------------------DSGNLPM-------SKKEMIAAQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNKAYSKNKK 191
BLAST of FC877023 vs. ExPASy Swiss-Prot
Match: SPF30_DANRE (Survival of motor neuron-related-splicing factor 30 OS=Danio rerio GN=smndc1 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.235e-14 Identity = 71/237 (29.96%), Postives = 109/237 (45.99%), Query Frame = 3 Query: 96 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKR--KKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TRSKTKK 791 EEL LS YK QLQQV L DP N + ++K+L EVI LT++LL + Q A + T +S + +P+ VG A +S+DG+ Y+A IE I NG +T+ +GN A V P+++L +K+E+ D ++ P ++++A +R KK A K R ++LE + +++ WQQF SK KK Sbjct: 3 EELMKQLSNYKAQLQQVEAALSIDPDNEDLLKLQKDLQEVIELTKDLLTS--QPAEGTTSTKSSETVAPS------------------HSWRVGDHCMATWSQDGQVYEAEIEEIDNENGTAAITFAGYGN------AEVMPLHML---------------KKVEEGRIRD--------EIDGKPKSKKELQAEQREYKKKKAQKKVQRMKELEQEREDQKSKWQQFNNKAYSKNKK 190
BLAST of FC877023 vs. ExPASy Swiss-Prot
Match: SPF30_RAT (Survival of motor neuron-related-splicing factor 30 OS=Rattus norvegicus GN=Smndc1 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.783e-13 Identity = 73/237 (30.80%), Postives = 102/237 (43.04%), Query Frame = 3 Query: 96 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQ--EKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TRSKTKK 791 E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T Q E T S S + Q VG K AV+SEDG+ Y+A IE I NG +T+ +GN E N++PV E K E D +K + K I + + KK A K R ++LE + ++ WQQF SK KK Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLST----------------------QPSETLTSSDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLLNLKPVE---EGRKAKE----------------DSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKK 191
BLAST of FC877023 vs. ExPASy Swiss-Prot
Match: SPF30_HUMAN (Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens GN=SMNDC1 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.783e-13 Identity = 71/235 (30.21%), Postives = 103/235 (43.83%), Query Frame = 3 Query: 96 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TRSKTKK 791 E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+ + AS P VG K AV+SEDG+ Y+A IE I NG +T+ +GN E N++PV E K E D +K + K I + + KK A K R ++LE + ++ WQQF SK KK Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD--SFASTQPT------------------HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVE---EGRKAKE----------------DSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKK 191
BLAST of FC877023 vs. ExPASy Swiss-Prot
Match: SPF30_PONAB (Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii GN=SMNDC1 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.329e-13 Identity = 70/235 (29.79%), Postives = 103/235 (43.83%), Query Frame = 3 Query: 96 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TRSKTKK 791 E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+ + AS P VG K A++SEDG+ Y+A IE I NG +T+ +GN E N++PV E K E D +K + K I + + KK A K R ++LE + ++ WQQF SK KK Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD--SFASTQPT------------------HSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVE---EGRKAKE----------------DSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKK 191
BLAST of FC877023 vs. ExPASy Swiss-Prot
Match: SPF30_MOUSE (Survival of motor neuron-related-splicing factor 30 OS=Mus musculus GN=Smndc1 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.042e-13 Identity = 71/235 (30.21%), Postives = 103/235 (43.83%), Query Frame = 3 Query: 96 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TRSKTKK 791 E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+ + AS P VG K AV+SEDG+ Y+A IE I NG +T+ +GN E N++PV E K E D +K + K I + + KK A K R ++LE + ++ WQQF SK KK Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD--SFASTQPT------------------HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLLNLKPVE---EGRKAKE----------------DSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKK 191
BLAST of FC877023 vs. ExPASy Swiss-Prot
Match: SPF30_BOVIN (Survival of motor neuron-related-splicing factor 30 OS=Bos taurus GN=SMNDC1 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.042e-13 Identity = 70/235 (29.79%), Postives = 102/235 (43.40%), Query Frame = 3 Query: 96 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TRSKTKK 791 E+L L++YK QLQQV L + N + ++K+L EVI LT++LL+T ++ S+ AS P VG K A++SEDG+ Y+A IE I NG +T+ +GN E N++PV E K E D +K + K I + + KK A K R ++LE + ++ WQQF SK KK Sbjct: 3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD--NFASTQPT------------------HSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVE---EGRKAKE----------------DSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKK 191 The following BLAST results are available for this feature:
BLAST of FC877023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877023 ID=FC877023; Name=FC877023; organism=Citrus clementina; type=EST; length=813bpback to top |