FC877023

Overview
NameFC877023
Unique NameFC877023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15066 contig Ccv1_Contig15066:19..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877023 vs. ExPASy Swiss-Prot
Match: SPF30_XENTR (Survival of motor neuron-related-splicing factor 30 OS=Xenopus tropicalis GN=smndc1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.250e-15
Identity = 76/237 (32.07%), Postives = 109/237 (45.99%), Query Frame = 3
Query:   96 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKR--KKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TRSKTKK 791
            E+L   L+ YK QLQQV   L  +  N +   ++K+L EVI LT++LL++        SET   A          ++ + SGS     +   VG K  AV+S+DG+WY+A IE I   NG   +T+  +GN E     N+RPV    E  K  E                   S +LP          +++ AA+R  KK  A K   R ++LE  +  ++  WQQF     SK KK
Sbjct:    3 EDLAKQLAGYKAQLQQVESALTANGENEDLLKLKKDLQEVIELTKDLLSS------QPSETADDAC---------DDMSASGS-----QSWKVGEKCMAVWSDDGQWYEAEIEEIDEENGTAAITFAGYGNAEVTSLLNLRPVE---EGRKAKE------------------DSGNLPM-------SKKEMIAAQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNKAYSKNKK 191          
BLAST of FC877023 vs. ExPASy Swiss-Prot
Match: SPF30_DANRE (Survival of motor neuron-related-splicing factor 30 OS=Danio rerio GN=smndc1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.235e-14
Identity = 71/237 (29.96%), Postives = 109/237 (45.99%), Query Frame = 3
Query:   96 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKR--KKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TRSKTKK 791
            EEL   LS YK QLQQV   L  DP N +   ++K+L EVI LT++LL +  Q A   + T +S + +P+                      VG    A +S+DG+ Y+A IE I   NG   +T+  +GN      A V P+++L               +K+E+    D        ++   P   ++++A +R  KK  A K   R ++LE  +  +++ WQQF     SK KK
Sbjct:    3 EELMKQLSNYKAQLQQVEAALSIDPDNEDLLKLQKDLQEVIELTKDLLTS--QPAEGTTSTKSSETVAPS------------------HSWRVGDHCMATWSQDGQVYEAEIEEIDNENGTAAITFAGYGN------AEVMPLHML---------------KKVEEGRIRD--------EIDGKPKSKKELQAEQREYKKKKAQKKVQRMKELEQEREDQKSKWQQFNNKAYSKNKK 190          
BLAST of FC877023 vs. ExPASy Swiss-Prot
Match: SPF30_RAT (Survival of motor neuron-related-splicing factor 30 OS=Rattus norvegicus GN=Smndc1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.783e-13
Identity = 73/237 (30.80%), Postives = 102/237 (43.04%), Query Frame = 3
Query:   96 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQ--EKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TRSKTKK 791
            E+L   L++YK QLQQV   L  +  N +   ++K+L EVI LT++LL+T                      Q  E  T S S +  Q      VG K  AV+SEDG+ Y+A IE I   NG   +T+  +GN E     N++PV    E  K  E                D  +K +  K  I        +  + KK  A K   R ++LE  +  ++  WQQF     SK KK
Sbjct:    3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLST----------------------QPSETLTSSDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLLNLKPVE---EGRKAKE----------------DSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKK 191          
BLAST of FC877023 vs. ExPASy Swiss-Prot
Match: SPF30_HUMAN (Survival of motor neuron-related-splicing factor 30 OS=Homo sapiens GN=SMNDC1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.783e-13
Identity = 71/235 (30.21%), Postives = 103/235 (43.83%), Query Frame = 3
Query:   96 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TRSKTKK 791
            E+L   L++YK QLQQV   L  +  N +   ++K+L EVI LT++LL+T     ++ S+  + AS  P                       VG K  AV+SEDG+ Y+A IE I   NG   +T+  +GN E     N++PV    E  K  E                D  +K +  K  I        +  + KK  A K   R ++LE  +  ++  WQQF     SK KK
Sbjct:    3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD--SFASTQPT------------------HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVE---EGRKAKE----------------DSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKK 191          
BLAST of FC877023 vs. ExPASy Swiss-Prot
Match: SPF30_PONAB (Survival of motor neuron-related-splicing factor 30 OS=Pongo abelii GN=SMNDC1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.329e-13
Identity = 70/235 (29.79%), Postives = 103/235 (43.83%), Query Frame = 3
Query:   96 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TRSKTKK 791
            E+L   L++YK QLQQV   L  +  N +   ++K+L EVI LT++LL+T     ++ S+  + AS  P                       VG K  A++SEDG+ Y+A IE I   NG   +T+  +GN E     N++PV    E  K  E                D  +K +  K  I        +  + KK  A K   R ++LE  +  ++  WQQF     SK KK
Sbjct:    3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD--SFASTQPT------------------HSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVE---EGRKAKE----------------DSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKK 191          
BLAST of FC877023 vs. ExPASy Swiss-Prot
Match: SPF30_MOUSE (Survival of motor neuron-related-splicing factor 30 OS=Mus musculus GN=Smndc1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.042e-13
Identity = 71/235 (30.21%), Postives = 103/235 (43.83%), Query Frame = 3
Query:   96 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TRSKTKK 791
            E+L   L++YK QLQQV   L  +  N +   ++K+L EVI LT++LL+T     ++ S+  + AS  P                       VG K  AV+SEDG+ Y+A IE I   NG   +T+  +GN E     N++PV    E  K  E                D  +K +  K  I        +  + KK  A K   R ++LE  +  ++  WQQF     SK KK
Sbjct:    3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD--SFASTQPT------------------HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAVYGNAEVTPLLNLKPVE---EGRKAKE----------------DSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKK 191          
BLAST of FC877023 vs. ExPASy Swiss-Prot
Match: SPF30_BOVIN (Survival of motor neuron-related-splicing factor 30 OS=Bos taurus GN=SMNDC1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.042e-13
Identity = 70/235 (29.79%), Postives = 102/235 (43.40%), Query Frame = 3
Query:   96 EELFSNLSTYKEQLQQVRELLVHDPGNSEYADMEKELSEVIALTEELLATAKQNAISVSETGTSASASPNLLQSKENKTESGSISDNQEKLAVGTKVQAVYSEDGEWYDATIEAI-TPNG-YYVTYDSWGNKEEVDPANVRPVNLLVEAEKVAEATKLAIKRKIEQAAASDFQSKSLPAKLHINPDDPEDVKAAKRKKIHAFKSKMRFEQLEVTQNKRQNAWQQFQT-TRSKTKK 791
            E+L   L++YK QLQQV   L  +  N +   ++K+L EVI LT++LL+T     ++ S+    AS  P                       VG K  A++SEDG+ Y+A IE I   NG   +T+  +GN E     N++PV    E  K  E                D  +K +  K  I        +  + KK  A K   R ++LE  +  ++  WQQF     SK KK
Sbjct:    3 EDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSD--NFASTQPT------------------HSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVE---EGRKAKE----------------DSGNKPMSKKEMI-------AQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKK 191          
The following BLAST results are available for this feature:
BLAST of FC877023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SPF30_XENTR3.250e-1532.07Survival of motor neuron-related-splicing factor 3... [more]
SPF30_DANRE1.235e-1429.96Survival of motor neuron-related-splicing factor 3... [more]
SPF30_RAT1.783e-1330.80Survival of motor neuron-related-splicing factor 3... [more]
SPF30_HUMAN1.783e-1330.21Survival of motor neuron-related-splicing factor 3... [more]
SPF30_PONAB2.329e-1329.79Survival of motor neuron-related-splicing factor 3... [more]
SPF30_MOUSE3.042e-1330.21Survival of motor neuron-related-splicing factor 3... [more]
SPF30_BOVIN3.042e-1329.79Survival of motor neuron-related-splicing factor 3... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3CE04RM1 EHR Citrus clementina cDNA clone KN0AAN3CE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877023 ID=FC877023; Name=FC877023; organism=Citrus clementina; type=EST; length=813bp
GCACGAGGTCTTGCTGTAATTCCATCTTCTTTAATTTTCGATTCACAAAG
TTAATTGAGTTAATAAAAATGCAAGGAGGAGAAGAGCTGAGCATTGAAGA
GCTCTTTTCAAATCTTTCTACTTATAAAGAGCAGCTTCAACAGGTCAGAG
AGCTGTTGGTTCATGATCCTGGAAACTCTGAATATGCTGACATGGAAAAG
GAGCTGTCTGAGGTGATTGCCTTGACAGAGGAACTCCTTGCAACTGCAAA
GCAAAATGCTATTTCTGTATCTGAAACTGGGACAAGTGCCAGTGCATCTC
CTAATTTACTCCAGTCTAAGGAGAATAAAACAGAATCAGGAAGCATATCT
GATAATCAAGAGAAGCTTGCAGTGGGCACCAAAGTTCAAGCTGTATATAG
TGAAGATGGGGAATGGTATGATGCCACTATTGAGGCAATCACGCCGAATG
GATACTATGTTACTTATGACAGTTGGGGAAATAAGGAAGAGGTGGACCCT
GCCAACGTAAGGCCTGTCAATCTATTGGTGGAAGCTGAGAAGGTAGCTGA
AGCTACTAAACTAGCTATCAAACGGAAGATTGAACAAGCTGCTGCATCTG
ACTTTCAGTCTAAAAGCTTGCCAGCAAAACTTCATATAAATCCCGATGAT
CCGGAGGATGTGAAAGCGGCAAAGCGTAAGAAGATACATGCTTTTAAGTC
AAAGATGCGATTCGAGCAACTTGAAGTAACCCAAAATAAACGTCAAAATG
CATGGCAGCAGTTCCAGACTACGAGAAGCAAGACTAAGAAGGTTGGTTTC
TTCTCTGGGCGCA
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