FC877062

Overview
NameFC877062
Unique NameFC877062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877062_ssr86 microsatellite FC877062_ssr86:86..100. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877062_ssr111 microsatellite FC877062_ssr111:111..134. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7054 contig Ccv1_Contig7054:591..1198. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877062 vs. ExPASy Swiss-Prot
Match: ESCA_ARATH (Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.113e-23
Identity = 60/126 (47.62%), Postives = 81/126 (64.29%), Query Frame = 1
Query:  244 ITREPEPGMSPYILEVPGGNDVVETISNFCRRKNIGICVLTGSGTVANVTLRQPSATPGS---------TITFHGRFDILSISATFLPQNAAYPPLPNIFAISLAGPQGQIVGGSVVGPLLAVGTV 594
            +TR+    +  ++LEV  G D+VE++S + RR+  G+ VL G+GTV+NVTLRQP  TPG+          +T HGRF+ILS++ T LP  A  PP     +I LAG QGQ+VGGSVV PL+A   V
Sbjct:  105 VTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQP-VTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPA--PPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPV 227          
The following BLAST results are available for this feature:
BLAST of FC877062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ESCA_ARATH7.113e-2347.62Putative DNA-binding protein ESCAROLA OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2AA05RM1 EHR Citrus clementina cDNA clone KN0AAN2AA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877062 ID=FC877062; Name=FC877062; organism=Citrus clementina; type=EST; length=599bp
GCACGAGGCTCACGTGACTCTCAGGCCTCCGAGGAAGACACCAACAGCCA
CAACTCCCCTGTTACCACTCCTCCAACCACCAACCCCGCCGCCGCCGCCG
CTAAATCAAGACAACAACAACAACAACAACAACAGCTTCAGGAACCCACC
ACCACCGGAGGGGATGGTGCTACTATCGAAGTCGTCCGCCGCCCCAGGGG
CAGACCCCCTGGCTCCAAGAACAAGCCCAAGCCTCCTGTTTATATCACCC
GCGAGCCAGAACCCGGCATGAGCCCTTACATTCTCGAAGTCCCCGGCGGA
AACGACGTCGTGGAGACCATCTCCAACTTCTGCAGGCGCAAGAACATCGG
TATCTGCGTGCTCACAGGGTCGGGCACCGTCGCCAACGTTACCCTCCGTC
AGCCCTCCGCGACTCCTGGGTCCACCATCACGTTCCACGGGAGGTTCGAC
ATTCTCTCGATATCCGCGACGTTCTTGCCCCAAAACGCAGCGTATCCGCC
CTTGCCCAACATATTCGCGATATCGCTGGCTGGGCCGCAGGGGCAGATCG
TGGGTGGATCCGTGGTCGGACCGCTGCTGGCTGTTGGGACGGTGTTCGT
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