FC877068

Overview
NameFC877068
Unique NameFC877068
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length254
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig645 contig Ccv1_Contig645:35..288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877068 vs. ExPASy Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.448e-22
Identity = 47/64 (73.44%), Postives = 58/64 (90.62%), Query Frame = 3
Query:   63 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSGG 254
            +GE AC YA LIL DDGIA+TAEKIA +VKAAN+++ESYWP+LFAKL EK+N++DLIL+VGSGG
Sbjct:    3 SGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLILSVGSGG 66          
BLAST of FC877068 vs. ExPASy Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.342e-20
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = 3
Query:   66 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSGG 254
            GE AC+YA +IL D+GIA+TA+KIA LVKAA V IESYWP LFAK+AEK+N+ DLI+NVG+GG
Sbjct:    5 GELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNVGAGG 67          
BLAST of FC877068 vs. ExPASy Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.753e-20
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = 3
Query:   66 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSGG 254
            GE AC+YA +IL D+GIA+TA+KIA LVKAA V IESYWP LFAK+AEK+N+ DLI+NVG+GG
Sbjct:    5 GELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNVGAGG 67          
BLAST of FC877068 vs. ExPASy Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.753e-20
Identity = 44/63 (69.84%), Postives = 56/63 (88.89%), Query Frame = 3
Query:   66 GEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSGG 254
            GE AC+YA +IL D+GIA+T++KIA LVKAA V+IESYWP LFAK+AEK+N+ DLI+NVG+GG
Sbjct:    5 GELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNVGAGG 67          
BLAST of FC877068 vs. ExPASy Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.655e-18
Identity = 40/62 (64.52%), Postives = 50/62 (80.65%), Query Frame = 3
Query:   69 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSGG 254
            E ACTYA LILHDDG+ +TA+ I  + KAA V++E YWP+LFAKL  KK++DDLI NVG+GG
Sbjct:    5 ELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLITNVGAGG 66          
BLAST of FC877068 vs. ExPASy Swiss-Prot
Match: RLA1_DROME (60S acidic ribosomal protein P1 OS=Drosophila melanogaster GN=RpLP1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.896e-15
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 3
Query:   69 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSG 251
            E AC YA+LIL DD +AVT EKI  ++KAANV++E YWP LFAK  E  N+ DLI N+GSG
Sbjct:    6 ELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSG 66          
BLAST of FC877068 vs. ExPASy Swiss-Prot
Match: RLA1_RAT (60S acidic ribosomal protein P1 OS=Rattus norvegicus GN=Rplp1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 3
Query:   69 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSGG 254
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG+GG
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGG 67          
BLAST of FC877068 vs. ExPASy Swiss-Prot
Match: RLA1_MOUSE (60S acidic ribosomal protein P1 OS=Mus musculus GN=Rplp1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 3
Query:   69 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSGG 254
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG+GG
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVSVEPFWPGLFAKALANVNIGSLICNVGAGG 67          
BLAST of FC877068 vs. ExPASy Swiss-Prot
Match: RLA1_HUMAN (60S acidic ribosomal protein P1 OS=Homo sapiens GN=RPLP1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 3
Query:   69 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSGG 254
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG+GG
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGG 67          
BLAST of FC877068 vs. ExPASy Swiss-Prot
Match: RLA1_BOVIN (60S acidic ribosomal protein P1 OS=Bos taurus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 3
Query:   69 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSGG 254
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG+GG
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGG 67          
The following BLAST results are available for this feature:
BLAST of FC877068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RLA1_MAIZE5.448e-2273.4460S acidic ribosomal protein P1 OS=Zea mays GN=RPP... [more]
RLA11_ARATH1.342e-2071.4360S acidic ribosomal protein P1-1 OS=Arabidopsis t... [more]
RLA13_ARATH1.753e-2071.4360S acidic ribosomal protein P1-3 OS=Arabidopsis t... [more]
RLA12_ARATH1.753e-2069.8460S acidic ribosomal protein P1-2 OS=Arabidopsis t... [more]
RLA1_CHLRE3.655e-1864.5260S acidic ribosomal protein P1 OS=Chlamydomonas r... [more]
RLA1_DROME2.896e-1562.3060S acidic ribosomal protein P1 OS=Drosophila mela... [more]
RLA1_RAT5.461e-1456.4560S acidic ribosomal protein P1 OS=Rattus norvegic... [more]
RLA1_MOUSE5.461e-1456.4560S acidic ribosomal protein P1 OS=Mus musculus GN... [more]
RLA1_HUMAN5.461e-1456.4560S acidic ribosomal protein P1 OS=Homo sapiens GN... [more]
RLA1_BOVIN5.461e-1456.4560S acidic ribosomal protein P1 OS=Bos taurus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2AB01RM1 EHR Citrus clementina cDNA clone KN0AAN2AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877068 ID=FC877068; Name=FC877068; organism=Citrus clementina; type=EST; length=254bp
GCACGAGGGCCAAACGCAGCCTCTCTTAGTGTGCGATTTTAGAATTATCA
ATTGCAATAATGGCCGGAGAGCAAGCTTGCACCTACGCCACTTTGATTCT
CCACGACGATGGAATCGCAGTCACTGCGGAGAAGATCGCGGCTTTGGTTA
AGGCAGCGAATGTGCAAATAGAGTCTTACTGGCCAAGCCTTTTTGCGAAG
TTGGCTGAAAAGAAAAACTTGGATGATCTCATCTTGAATGTTGGCTCCGG
TGGC
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