FC877078

Overview
NameFC877078
Unique NameFC877078
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9541 contig Ccv1_Contig9541:304..951. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877078 vs. ExPASy Swiss-Prot
Match: CHAC2_DANRE (Cation transport regulator-like protein 2 OS=Danio rerio GN=chac2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.149e-18
Identity = 57/143 (39.86%), Postives = 78/143 (54.55%), Query Frame = 3
Query:    9 DHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIXLANEVRK 431
            DHRG P  P R  TL +  E   WGVAY +  G E+E    EYL+ RE        V F+ + E  QP +   +++  + D   N  YLGPAPLE +A+QI  +VGP G N DYLF+L  A+  +  E  DD++  L   V++
Sbjct:   38 DHRGVPGKPGRVVTLIEDPEGCVWGVAYKLPSGQEQE--VKEYLDYREKGGYGVITVTFHPKDEQQQP-MQDTLLYIGSCD---NPNYLGPAPLETIAQQIVKSVGPSGKNTDYLFELADALRQLVPEDLDDHLFSLERLVKQ 174          
BLAST of FC877078 vs. ExPASy Swiss-Prot
Match: CHAC2_XENLA (Cation transport regulator-like protein 2 OS=Xenopus laevis GN=chac2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.052e-17
Identity = 58/143 (40.56%), Postives = 79/143 (55.24%), Query Frame = 3
Query:    9 DHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIXLANEVRK 431
            DHRG P  P R  TL +  E   WGVAY +  G E+E  A  YL+ RE      + V FY +    QP    V+++  T D   N  YLGPAPLE++A QI  AVGP G N +YLF+L  ++ ++  E  D+++  L   VR+
Sbjct:   38 DHRGVPGKPGRVVTLVEDPEGCVWGVAYRLPEGKEEEVKA--YLDFREKGGYRTSTVVFYPKDPSIQPF--NVLLYIGTCD---NPNYLGPAPLEDIAEQILNAVGPSGRNTEYLFELANSLRNLVPEDADEHLFSLEKLVRQ 173          
BLAST of FC877078 vs. ExPASy Swiss-Prot
Match: CHAC2_CHICK (Cation transport regulator-like protein 2 OS=Gallus gallus GN=chac2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.986e-17
Identity = 56/129 (43.41%), Postives = 71/129 (55.04%), Query Frame = 3
Query:    9 DHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHED 395
            DHRG P  P R  TL +  E   WGVAY +  G E E  A  YL+ RE      T V FY +    +P    V+++  T D   N  YLGPAPL+E+A QI  AVGP G N +YLF+L  +M ++  ED
Sbjct:   38 DHRGVPGKPGRVVTLVEDPEGCVWGVAYRLPAGQECEVKA--YLDFREKGGYRTTTVVFYPKDSSIKPF--DVLLYIGTRD---NPNYLGPAPLQEIAEQIIDAVGPSGRNTEYLFELANSMRNLVPED 159          
BLAST of FC877078 vs. ExPASy Swiss-Prot
Match: CHAC2_HUMAN (Cation transport regulator-like protein 2 OS=Homo sapiens GN=CHAC2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.406e-16
Identity = 56/145 (38.62%), Postives = 79/145 (54.48%), Query Frame = 3
Query:    9 DHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIXLANEVRKEL 437
            DHRG P  P R  TL +      WGVAY +  G E+E  A  YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  ++ ++  E  D+++  L   V++ L
Sbjct:   38 DHRGVPGKPGRVVTLVEDPAGCVWGVAYRLPVGKEEEVKA--YLDFREKGGYRTTTVIFYPKDPTTKPF--SVLLYIGTCD---NPDYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELANSIRNLVPEEADEHLFALEKLVKERL 175          
BLAST of FC877078 vs. ExPASy Swiss-Prot
Match: CHAC2_RAT (Cation transport regulator-like protein 2 OS=Rattus norvegicus GN=Chac2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 55/145 (37.93%), Postives = 77/145 (53.10%), Query Frame = 3
Query:    9 DHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIXLANEVRKEL 437
            DHRG P  P R  TL +      WGVAY +  G E+E     YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  ++  +  E  D+++  L   V++ L
Sbjct:   38 DHRGVPGKPGRVVTLVEDPGGSVWGVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFYPKDSTTKPF--SVLLYIGTCD---NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSIRKLVPEDADEHLFSLEKLVKERL 175          
BLAST of FC877078 vs. ExPASy Swiss-Prot
Match: CHAC2_MOUSE (Cation transport regulator-like protein 2 OS=Mus musculus GN=Chac2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 55/145 (37.93%), Postives = 77/145 (53.10%), Query Frame = 3
Query:    9 DHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIXLANEVRKEL 437
            DHRG P  P R  TL +      WGVAY +  G E+E     YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  ++  +  E  D+++  L   V++ L
Sbjct:   38 DHRGVPGKPGRVVTLVEDPGGSVWGVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFYPKDSTTKPF--SVLLYIGTCD---NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSVRKLVPEDADEHLFSLEKLVKERL 175          
BLAST of FC877078 vs. ExPASy Swiss-Prot
Match: CHAC1_MOUSE (Cation transport regulator-like protein 1 OS=Mus musculus GN=Chac1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.673e-13
Identity = 51/124 (41.13%), Postives = 66/124 (53.23%), Query Frame = 3
Query:   12 HRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERREC---EYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 374
            HRG+ + P R  TL +  E   WGVAY VRG  E+   A++YL  RE     YD+K  V FY +  P QP     + + +TP    N  YLGPAP E +A QI    G  G+N +YL +L   M
Sbjct:   72 HRGSDKMPGRVVTLLEDHEGCTWGVAYQVRG--EQVNEALKYLNVREAVLGGYDTKE-VTFYPQDTPDQPLT--ALAYVATP---QNPGYLGPAPEEVIATQILACRGFSGHNLEYLLRLADFM 187          
BLAST of FC877078 vs. ExPASy Swiss-Prot
Match: CHAC1_HUMAN (Cation transport regulator-like protein 1 OS=Homo sapiens GN=CHAC1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.956e-13
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 3
Query:   12 HRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECE---YDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIG--HEDDYIIXLANEV 425
            HRG+ + P R  TL +  E   WGVAY V+G  E+   A++YL  RE     YD+K  V FY +  P QP     + + +TP    N  YLGPAP E +A QI    G  G+N +YL +L   M   G   +D+++  + + V
Sbjct:   71 HRGSDKMPGRVVTLLEDHEGCTWGVAYQVQG--EQVSKALKYLNVREAVLGGYDTKE-VTFYPQDAPDQPLKA--LAYVATPQ---NPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHLAAIVDAV 205          
BLAST of FC877078 vs. ExPASy Swiss-Prot
Match: CHAC2_BOVIN (Cation transport regulator-like protein 2 OS=Bos taurus GN=CHAC2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.733e-12
Identity = 53/145 (36.55%), Postives = 74/145 (51.03%), Query Frame = 3
Query:    9 DHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIXLANEVRKEL 437
            DHRG P   +             WGVAY +  G E+E  A  YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI  A GP G N +YLF+L  +M  +  E  D+++  L   V++ L
Sbjct:   38 DHRGVPGKGS------------VWGVAYKLPVGKEEEVKA--YLDFREKGGYRTTTVIFYPKDSTTEPF--SVLLYIGTRD---NPNYLGPAPLEDIAEQIFNAAGPSGKNTEYLFELANSMRSLVPEDADEHLFSLEKLVKERL 163          
BLAST of FC877078 vs. ExPASy Swiss-Prot
Match: CHAC1_DANRE (Cation transport regulator-like protein 1 OS=Danio rerio GN=chac1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.042e-12
Identity = 47/123 (38.21%), Postives = 62/123 (50.41%), Query Frame = 3
Query:   12 HRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDS--KTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 374
            HRG  + P R  TL +  +   WGVA+ V G   +E L  +YL  RE          VDF+  G    P     +V+ +TPD   N  YLGPA  EE+A QIA   G  G+N +YL +L + M
Sbjct:   51 HRGDDEMPGRVVTLIEEDDVCTWGVAFEVTGSQMEESL--KYLNVREAVRGGYLTRAVDFFPRGTNQPPVQA--LVYIATPD---NPIYLGPASTEEIASQIAVCKGNSGHNIEYLLRLAEFM 166          
The following BLAST results are available for this feature:
BLAST of FC877078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CHAC2_DANRE6.149e-1839.86Cation transport regulator-like protein 2 OS=Danio... [more]
CHAC2_XENLA3.052e-1740.56Cation transport regulator-like protein 2 OS=Xenop... [more]
CHAC2_CHICK3.986e-1743.41Cation transport regulator-like protein 2 OS=Gallu... [more]
CHAC2_HUMAN4.406e-1638.62Cation transport regulator-like protein 2 OS=Homo ... [more]
CHAC2_RAT1.282e-1537.93Cation transport regulator-like protein 2 OS=Rattu... [more]
CHAC2_MOUSE1.282e-1537.93Cation transport regulator-like protein 2 OS=Mus m... [more]
CHAC1_MOUSE2.673e-1341.13Cation transport regulator-like protein 1 OS=Mus m... [more]
CHAC1_HUMAN5.956e-1337.06Cation transport regulator-like protein 1 OS=Homo ... [more]
CHAC2_BOVIN1.733e-1236.55Cation transport regulator-like protein 2 OS=Bos t... [more]
CHAC1_DANRE5.042e-1238.21Cation transport regulator-like protein 1 OS=Danio... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2AC02RM1 EHR Citrus clementina cDNA clone KN0AAN2AC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877078 ID=FC877078; Name=FC877078; organism=Citrus clementina; type=EST; length=648bp
GCACGAGGGATCACAGGGGTACACCTCAACACCCGGCTAGAACTTGCACG
CTGGAAAAATCTCAAGAAACCATTTGTTGGGGTGTTGCTTATTGTGTCCG
AGGAGGTCCTGAAAAGGAAAGACTCGCTATGGAGTATTTGGAACGAAGAG
AATGCGAGTACGACTCTAAGACCCTTGTAGACTTTTACAGGGAAGGGGAG
CCTTCACAGCCGGCTCTAACTGGGGTTATAGTTTTCACGTCTACTCCAGA
CAAAGTATCAAACAAGTATTATCTGGGGCCTGCTCCATTGGAGGAAATGG
CTAGGCAAATTGCAACGGCTGTCGGACCCTGTGGAAACAATAGAGACTAC
CTTTTCAAGTTGGAGAAGGCCATGTTTGATATTGGTCATGAGGACGACTA
CATAATANAGCTGGCAAATGAAGTGAGGAAAGAGCTTGGAACTGCTGAAA
AAGGAATTCTCAAGGAGAGGAAGTTGGTTGGGTCATCATCCCGCATGCCG
CTCACAAAATCTCATATTCCAACCCTTCAACTGGGTCTACGCCCTGAGGC
GGTGGCCATGGATTCCTAAGAACACAAGGCTGACAGACACCATAGGCCTA
GGGGACTAATCAAAGATATCAAGCAACGTAGCTAAACACAATCGCCAT
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