FC877251

Overview
NameFC877251
Unique NameFC877251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10396 contig Ccv1_Contig10396:1..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE3_BACTN (Glutamate dehydrogenase OS=Bacteroides thetaiotaomicron GN=gdhA PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.484e-34
Identity = 74/189 (39.15%), Postives = 112/189 (59.26%), Query Frame = 3
Query:   12 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKLQ 575
            ++F   +L     +LKG  C+VSGSG +A + +EK+I  G   V+ SD+ GY+ D DG D  K+ ++ ++K+  R  +R+Y++ Y   KY + AKPW E+CD+A P A+QNE++   A  LV +GC  + EG+NMP TPEAV V + A +L AP             LE+ Q    + WS E+ + KL+
Sbjct:  212 IYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTIEKVIELGGKVVTCSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYG-CKYVEGAKPWGEKCDIALPSATQNELNGDHARQLVANGCIAVSEGANMPSTPEAVRVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSAEEVDEKLK 399          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE4_PRERU (NAD(P)-specific glutamate dehydrogenase OS=Prevotella ruminicola GN=gdhA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.389e-32
Identity = 67/188 (35.64%), Postives = 116/188 (61.70%), Query Frame = 3
Query:   12 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKL 572
            V+F + +L    + L+G   +VSGSG +A + +EKL+  GA PV+ SD+ GY+ D DG D  K++F+ ++K+ +R  +++Y++ Y   KY + A+PW E+ D+A PCA+Q+EI++++A  L+ +G   + EG+NMP  P A+ V + A +L  P             LE++Q    + W+ E+ ++KL
Sbjct:  212 VYFLEDMLKTRGESLEGKTVLVSGSGNVAQYTIEKLLQLGAKPVTCSDSNGYIYDPDGIDAEKLAFIMELKNVKRGRIKEYAEKYG-VKYVENARPWGEKADIATPCATQDEINEAEAKTLIANGVFAVSEGANMPTEPAAIKVFQDAKILYCPGKASNAGGVATSGLEMSQNSERLSWTREEVDTKL 398          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE4_HAEIN (NADP-specific glutamate dehydrogenase OS=Haemophilus influenzae GN=gdhA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.176e-31
Identity = 68/189 (35.98%), Postives = 115/189 (60.85%), Query Frame = 3
Query:    9 LVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKL 572
            L++FAQ +LA+      G    VSGSG +A + +EK ++ GA  V+ SD+ GY+ D +GF   K++ L DIK+ +R  ++DY++ +   +Y++  +PW  + D+A PCA+QNE++ SDA  L+ +G +++ EG+NMP T EA + L  A+VL  P             LE+ Q    ++W+ E+ +++L
Sbjct:  215 LIYFAQAMLAEKGDSFAGKVVSVSGSGNVAQYAIEKALSLGAKVVTCSDSSGYVYDPNGFTTEKLAALFDIKNTKRGRVKDYAEQFGL-QYFEGKRPWEVQVDIALPCATQNELELSDAQRLIKNGVKLVAEGANMPTTIEATEALLAADVLFGPGKAANAGGVATSGLEMAQSSQRLYWTAEEVDAQL 402          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE4_CHLSO (NADP-specific glutamate dehydrogenase (Fragment) OS=Chlorella sorokiniana PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.006e-31
Identity = 71/191 (37.17%), Postives = 109/191 (57.07%), Query Frame = 3
Query:   12 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY-DEAKPWNERC--DVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKLQ 575
            V F + +L D  + LKG RC+VSG+G +A +  E L+  GAI +S+SD++GY+ + +GF   ++  ++D+K +  S R        + Y  D  KPW   C  D+AFPCA+QNEID+ DA  L+  GC+ +VEG+NMP T EA+    KA ++  P             LE+ Q    ++W+ E+   KL+
Sbjct:  290 VLFVENVLKDKGESLKGKRCLVSGAGNVAQYCAELLLEKGAIVLSLSDSQGYVYEPNGFTREQLQAVQDMKKKNNSARISEYKSDTAVYVGDRRKPWELDCQVDIAFPCATQNEIDEHDAELLIKHGCQYVVEGANMPSTNEAIHKYNKAGIIYCPGKAANAGGVAVSGLEMTQNRMSLNWTREEVRDKLE 480          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE4_PSYT1 (NADP-specific glutamate dehydrogenase OS=Psychrobacter sp. (strain TAD1) GN=gdhA PE=1 SV=4)

HSP 1 Score: 128.257 bits (321), Expect = 4.182e-29
Identity = 67/188 (35.64%), Postives = 111/188 (59.04%), Query Frame = 3
Query:   12 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKLQ 575
            V+F Q +LA  N+ ++G + +VSG+G +++H  EK    GAI ++VSD+KG + D  G +  KI +L+  K Q + L DY + +   ++  + KPW+ + D+A P A+QNEI++ DA  LV++G + +VEG+NMP T EA+D ++   V  AP             LE++Q     + + E  + +LQ
Sbjct:  212 VYFLQNMLAAQNESIEGKKVLVSGAGNVSLHAAEKATLIGAIVLTVSDSKGTIYDAKGLNQEKIDWLKVQKDQHKPLADYVEVFG-GEWMADQKPWSIKADIAIPSATQNEINEEDAKLLVDNGVKYIVEGANMPLTAEAIDYIRLHRVHYAPGKAANAGGVAVSALEMSQNSVRQYQTFEQVDERLQ 398          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE4_SALTY (NADP-specific glutamate dehydrogenase OS=Salmonella typhimurium GN=gdhA PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 68/189 (35.98%), Postives = 108/189 (57.14%), Query Frame = 3
Query:    9 LVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK-SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKL 572
            LV+F + +L       +G+R  VSGSG +A + +EK +A+GA  V+ SD+ G +VDE GF   K++ L +IK S+   + DY++ +  + Y +  +PW+   D+A PCA+QNE+D   A  L+ +G + + EG+NMP T EA D+  +A VL AP             LE+ Q    + W  E  +++L
Sbjct:  215 LVYFTEAMLKRHGLGFEGMRVAVSGSGNVAQYAIEKAMAFGARVVTASDSSGTVVDESGFTPEKLARLCEIKASRDGRVADYAREFGLT-YLEGQQPWSVPVDIALPCATQNELDVDAARVLIANGVKAVAEGANMPTTIEATDLFLEAGVLFAPGKAANAGGVATSGLEMAQNAARLSWKAEKVDARL 402          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE4_SALTI (NADP-specific glutamate dehydrogenase OS=Salmonella typhi GN=gdhA PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.624e-28
Identity = 68/189 (35.98%), Postives = 108/189 (57.14%), Query Frame = 3
Query:    9 LVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK-SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKL 572
            LV+F + +L       +G+R  VSGSG +A + +EK +A+GA  V+ SD+ G +VDE GF   K++ L +IK S+   + DY++ +  + Y +  +PW+   D+A PCA+QNE+D   A  L+ +G + + EG+NMP T EA D+  +A VL AP             LE+ Q    + W  E  +++L
Sbjct:  215 LVYFTEAMLKRHGLGFEGMRVAVSGSGNVAQYAIEKAMAFGARVVTASDSSGTVVDESGFTPEKLARLCEIKASRDGRVADYAREFGLT-YLEGQQPWSVPVDIALPCATQNELDVDAARVLIANGVKAVAEGANMPTTIEATDLFLEAGVLFAPGKAANAGGVATSGLEMAQNAARLSWKAEKVDARL 402          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE4_COREF (NADP-specific glutamate dehydrogenase OS=Corynebacterium efficiens GN=gdh PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.888e-28
Identity = 64/188 (34.04%), Postives = 106/188 (56.38%), Query Frame = 3
Query:   12 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKL 572
            V+F Q ++    + L+G + +VSGSG +A + ++K+   GA+ V  SD+ G++   +G D  K   LR+IK  +R+ +  Y+     ++Y+ +   W+   D+A PCA+QNE+D  +A  L ++GCR + EG+NMP TPEA+DV ++  VL  P             LE+ Q  +   WS E  + +L
Sbjct:  217 VYFVQEMIKAEGETLEGKKVIVSGSGNVATYAIQKVQELGAVVVGFSDSSGWVSTPNGVDVAK---LREIKEVRRARVSSYADEVEGAEYHTDGSIWDLTADIALPCATQNELDGDNARTLADNGCRFVAEGANMPSTPEAIDVFRERGVLFGPGKAANAGGVATSALEMQQNASRDSWSFEYTDERL 401          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE4_GIALA (NADP-specific glutamate dehydrogenase OS=Giardia lamblia PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 66/192 (34.38%), Postives = 104/192 (54.17%), Query Frame = 3
Query:   12 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWN---ERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKLQ 575
            V+F + +  D N  ++G   ++SGSG +A    EKLI  GA  ++ SD+ G +VD+DGF+  K++ L  +K+++R  + ++   Y    YY+  KPW     + D   PCA+QNE+   DA  LV  G + + EG+NMP T EAV V     V+  PA            LE++Q    + W+ E+ + KL+
Sbjct:  213 VYFLEEMCKDNNTVIRGKNVLLSGSGNVAQFACEKLIQLGAKVLTFSDSNGTIVDKDGFNEEKLAHLMYLKNEKRGRVSEFKDKYPSVAYYEGKKPWECFEGQMDCIMPCATQNEVSGDDATRLVGLGLKFVAEGANMPSTAEAVHVYHAKGVMYGPAKASNAGGVSVSGLEMSQNSVRLQWTAEEVDQKLR 404          
BLAST of FC877251 vs. ExPASy Swiss-Prot
Match: DHE4_ECOLI (NADP-specific glutamate dehydrogenase OS=Escherichia coli (strain K12) GN=gdhA PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.295e-27
Identity = 66/189 (34.92%), Postives = 107/189 (56.61%), Query Frame = 3
Query:    9 LVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK-SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPAMXXXXXXXXXXELELNQECNMVHWSPEDFESKL 572
            LV+F + +L       +G+R  VSGSG +A + +EK + +GA  ++ SD+ G +VDE GF   K++ L +IK S+   + DY+K +    Y +  +PW+   D+A PCA+QNE+D   A  L+ +G + + EG+NMP T EA ++ ++A VL AP             LE+ Q    + W  E  +++L
Sbjct:  215 LVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLV-YLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWKAEKVDARL 402          
The following BLAST results are available for this feature:
BLAST of FC877251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DHE3_BACTN1.484e-3439.15Glutamate dehydrogenase OS=Bacteroides thetaiotaom... [more]
DHE4_PRERU1.389e-3235.64NAD(P)-specific glutamate dehydrogenase OS=Prevote... [more]
DHE4_HAEIN1.176e-3135.98NADP-specific glutamate dehydrogenase OS=Haemophil... [more]
DHE4_CHLSO2.006e-3137.17NADP-specific glutamate dehydrogenase (Fragment) O... [more]
DHE4_PSYT14.182e-2935.64NADP-specific glutamate dehydrogenase OS=Psychroba... [more]
DHE4_SALTY4.624e-2835.98NADP-specific glutamate dehydrogenase OS=Salmonell... [more]
DHE4_SALTI4.624e-2835.98NADP-specific glutamate dehydrogenase OS=Salmonell... [more]
DHE4_COREF7.888e-2834.04NADP-specific glutamate dehydrogenase OS=Corynebac... [more]
DHE4_GIALA1.757e-2734.38NADP-specific glutamate dehydrogenase OS=Giardia l... [more]
DHE4_ECOLI2.295e-2734.92NADP-specific glutamate dehydrogenase OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BD08RM1 EHR Citrus clementina cDNA clone KN0AAN2BD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877251 ID=FC877251; Name=FC877251; organism=Citrus clementina; type=EST; length=721bp
GCACGAGGCTGGTTTTCTTTGCCCAGCTTATTCTCGCAGACATGAATAAG
GAGCTCAAAGGACTGAGATGTGTTGTAAGTGGTTCTGGAAAGATTGCAAT
GCATGTCCTGGAAAAGCTTATTGCTTATGGTGCTATTCCTGTTTCAGTGT
CAGATGCTAAAGGATATTTGGTGGATGAGGATGGATTTGATTACATGAAA
ATATCATTTTTGAGGGATATCAAATCACAGCAGAGAAGTTTGAGAGACTA
CTCAAAGACATACGCTCGGTCTAAGTACTATGATGAAGCAAAACCTTGGA
ATGAAAGGTGTGATGTTGCATTTCCTTGTGCCTCCCAGAATGAAATAGAT
CAGTCTGATGCCATTAATTTGGTTAATTCAGGTTGTCGTATACTTGTAGA
AGGTTCAAATATGCCATGTACACCTGAAGCAGTTGATGTTCTGAAAAAAG
CTAATGTTCTCATAGCCCCTGCAATGGCTGCTGGTGCTGGAGGGGTTGTT
GCAGGAGAACTTGAACTAAACCAGGAGTGCAATATGGTGCACTGGTCGCC
CGAGGACTTTGAATCTAAATTACAAGTATGACACCCAATACTTCAAATCT
TGCTCTCAAATAGCTTAATCTTGAATGCAAATAGCTTCAAGCTTTTCTTT
CCTTTTCCTTTTCATTCGAGCTGAGAACGACATANCTGAAAGCATTAGTT
GTAACTATTAGCTGTCTTAAT
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