FC877253

Overview
NameFC877253
Unique NameFC877253
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length820
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10380 contig Ccv1_Contig10380:1..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877253 vs. ExPASy Swiss-Prot
Match: WAP53_MESAU (Telomerase Cajal body protein 1 OS=Mesocricetus auratus GN=Wrap53 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.205e-59
Identity = 80/168 (47.62%), Postives = 116/168 (69.05%), Query Frame = 3
Query:  315 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL 818
            LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP+   + A GSY +T  +Y  D+   L +L G +GG+TH+ F  DGN  ++G RKD  +LCWDLR+   +++ L R    TNQRI FD++PSG+ L
Sbjct:  252 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIAFSPSQP-LYACGSYGRTLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSREVT-TNQRIYFDLDPSGQFL 416          

HSP 2 Score: 92.8189 bits (229), Expect = 1.205e-59
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:   23 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV---TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            NFLKG KW+PDGS  LT+S D TLRI++LP    S        A +Q  Y   + V    EG+++YD+CW+  MS+S P +   AS++R++PIH+WDA T
Sbjct:  158 NFLKGCKWAPDGSCILTNSADNTLRIYNLPPELYS--------ATEQVDYAEMVPVLRMVEGDTIYDYCWYSLMSSSQPDTSYVASSSRENPIHIWDAFT 249          
BLAST of FC877253 vs. ExPASy Swiss-Prot
Match: WAP53_MOUSE (Telomerase Cajal body protein 1 OS=Mus musculus GN=Wrap53 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.710e-58
Identity = 80/168 (47.62%), Postives = 116/168 (69.05%), Query Frame = 3
Query:  315 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL 818
            LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP+   + A GSY +T  +Y  D+   L +L G +GG+TH+ F  DGN  ++G RKD  +LCWDLR+   +++ L R    TNQRI FD++PSG+ L
Sbjct:  248 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIAFSPSQP-LYACGSYGRTIGLYAWDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSREVT-TNQRIYFDLDPSGQFL 412          

HSP 2 Score: 88.9669 bits (219), Expect = 1.710e-58
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   23 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            NFLKG KW+PDGS  LT+S D  LRI++LP    S          D       L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  154 NFLKGCKWAPDGSCILTNSADNVLRIYNLPPELYSEQEQV-----DYAEMVPVLRMVEGDTIYDYCWYSLMSSTQPDTSYVASSSRENPIHIWDAFT 245          
BLAST of FC877253 vs. ExPASy Swiss-Prot
Match: WAP53_RAT (Telomerase Cajal body protein 1 OS=Rattus norvegicus GN=Wrap53 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.907e-58
Identity = 79/168 (47.02%), Postives = 115/168 (68.45%), Query Frame = 3
Query:  315 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL 818
            LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S +AFSP    + A GSY +T  +Y  D+   L +L G +GG+TH+ F  DGN  ++G RKD  +LCWDLR+   +++ L R    TNQRI FD++PSG+ L
Sbjct:  248 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRTTF-AKKQGQSGIISCLAFSPAQP-LYACGSYGRTLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSREVT-TNQRIYFDLDPSGQFL 412          

HSP 2 Score: 89.3521 bits (220), Expect = 2.907e-58
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 2
Query:   23 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            NFLKG KW+PDGS  LT+S D  LRI++LP      ++ + S   D       L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  154 NFLKGCKWAPDGSCILTNSADNVLRIYNLPP-----ELYSESEQVDYAEMVPVLRMVEGDTIYDYCWYSLMSSTQPDTSYVASSSRENPIHIWDAFT 245          
BLAST of FC877253 vs. ExPASy Swiss-Prot
Match: WAP53_HUMAN (Telomerase Cajal body protein 1 OS=Homo sapiens GN=WRAP53 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.376e-57
Identity = 78/168 (46.43%), Postives = 115/168 (68.45%), Query Frame = 3
Query:  315 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL 818
            LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP    + A GSY ++  +Y  D+   L +L G +GG+TH+ F  DGN  ++G RKD  +LCWDLR++   ++ L R    TNQRI FD++P+G+ L
Sbjct:  264 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTARPGRDCEVRATF-AKKQGQSGIISCIAFSPAQP-LYACGSYGRSLGLYAWDDGSPLALLGGHQGGITHLCFHPDGNRFFSGARKDAELLCWDLRQSGYPLWSLGREVT-TNQRIYFDLDPTGQFL 428          

HSP 2 Score: 88.9669 bits (219), Expect = 5.376e-57
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 2
Query:   17 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            P NFLKG KW+PDGS  LT+S D  LRI++LP   + ++      A+        L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  168 PENFLKGCKWAPDGSCILTNSADNILRIYNLPPE-LYHEGEQVEYAE----MVPVLRMVEGDTIYDYCWYSLMSSAQPDTSYVASSSRENPIHIWDAFT 261          
BLAST of FC877253 vs. ExPASy Swiss-Prot
Match: WAP53_BOVIN (Telomerase Cajal body protein 1 OS=Bos taurus GN=WRAP53 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.553e-56
Identity = 76/168 (45.24%), Postives = 115/168 (68.45%), Query Frame = 3
Query:  315 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIEPSGRHL 818
            LR ++R+Y+ +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    ++GQ+GI+S IAFSPT   + A GSY ++  +Y  ++   L +L G +GG+TH+ F  DGN  ++G RKD  +LCWDLR+    ++ L R    TNQRI FD++P+G+ L
Sbjct:  255 LRASFRSYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRTTF-AKRQGQSGIISCIAFSPTQP-LYACGSYGRSLGLYTWEDGSPLALLGGHQGGITHLCFHPDGNCFFSGARKDAELLCWDLRQLGHPLWSLSREVT-TNQRIYFDLDPTGQFL 419          

HSP 2 Score: 88.9669 bits (219), Expect = 1.553e-56
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 2
Query:   17 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS-----LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            P NFLKG KW+PDGS  LT+S D  LRI++LP            L  + +  E +     L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  159 PENFLKGCKWAPDGSCILTNSADNILRIYNLPPE----------LYNEGEQLEYAEMAPVLRMVEGDTIYDYCWYSLMSSAQPDTSYVASSSRENPIHIWDAFT 252          
BLAST of FC877253 vs. ExPASy Swiss-Prot
Match: GNR1_SCHPO (Guanine nucleotide-binding protein negative regulator 1 OS=Schizosaccharomyces pombe GN=gnr1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.521e-24
Identity = 47/168 (27.98%), Postives = 71/168 (42.26%), Query Frame = 3
Query:  318 RCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE-----GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE--GGVTHVQFSRDGNYLYTGGRKDPYILCWDLRKAVQVVYKLYRSSEHTNQRILFDIE 800
            + +Y   D  +    +  + F   G  + AG    +  F++    ++    +   G K         GI S  + +P  +  LA+G+YS    IY +       +    E   GVTH+Q+  DG  LY G R    I  WD+R    +VY L      TNQRILFD +
Sbjct:  143 KASYHMIDHQERYQGSHCLQFTNDGEYLIAGDKNCLHHFNIRTGCKEPVMTTVTHGYKVPLWEFSLKGIQSCFSLNPMDSKTLAVGTYSNRVGIYNDCGRRPCQLEFSIERGNGVTHLQWCEDGEKLYVGSRCSDKIEVWDIRYVRDMVYALEGHRGDTNQRILFDTD 310          

HSP 2 Score: 63.929 bits (154), Expect = 8.521e-24
Identity = 34/99 (34.34%), Postives = 54/99 (54.55%), Query Frame = 2
Query:   17 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            P NF    +WSPDGS+ L+ +ED+ L  +++P + +S   +         SY+        E+VY + W+  M   DP+S +FA ++RD PI L + TT
Sbjct:   45 PLNFFHSSRWSPDGSTILSLTEDQCLNCWNVPFSDLSKKADGPLNFSKHLSYKYQ----SPETVYSYSWYSRMKLDDPSSNLFAVSSRDQPIKLINFTT 139          
The following BLAST results are available for this feature:
BLAST of FC877253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
WAP53_MESAU1.205e-5947.62Telomerase Cajal body protein 1 OS=Mesocricetus au... [more]
WAP53_MOUSE1.710e-5847.62Telomerase Cajal body protein 1 OS=Mus musculus GN... [more]
WAP53_RAT2.907e-5847.02Telomerase Cajal body protein 1 OS=Rattus norvegic... [more]
WAP53_HUMAN5.376e-5746.43Telomerase Cajal body protein 1 OS=Homo sapiens GN... [more]
WAP53_BOVIN1.553e-5645.24Telomerase Cajal body protein 1 OS=Bos taurus GN=W... [more]
GNR1_SCHPO8.521e-2427.98Guanine nucleotide-binding protein negative regula... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2BD10RM1 EHR Citrus clementina cDNA clone KN0AAN2BD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877253 ID=FC877253; Name=FC877253; organism=Citrus clementina; type=EST; length=820bp
GCACGAGGCTTCAATCCCTAACAATTTCCTCAAAGGCATCAAATGGTCGC
CGGATGGTTCAAGTTTCCTTACGAGTTCTGAAGACAAAACGCTTCGCATT
TTCTCATTGCCAGAAAATGGAATCAGCTATGACGTTAATGCCTGTTCTTT
GGCTAAAGATCAAGATTCTTATGAGGCAAGCCTTGTTGTGACGGAAGGAG
AGTCTGTTTATGACTTCTGTTGGTTCCCACACATGTCTGCTTCAGATCCA
ACTAGTTGTGTGTTTGCTTCCACCACTCGTGACCACCCAATTCATCTTTG
GGATGCTACTACTGTTACGTTGCACATACCGGGCTTATGATGCTGTAGAT
GAAATCACTGCTGCCTTTTCAGTTGCATTCAATCCCACTGGTACTAAGAT
ATTTGCTGGATACAACAAATCTGTCCGAGTATTTGATGTACACCGCCCTG
GTAGGGATTTTGAAAAGTATTCAACACTTAAGGGAAATAAAGAAGGCCAA
GCAGGTATAATGTCTGCAATTGCTTTCAGTCCAACCCATACCGGGATGCT
TGCTATCGGTTCCTATAGCCAGACTTCAGCAATTTACAGGGAAGACAACA
TGGAACTCTTATATGTTTTACATGGTCAAGAAGGTGGGGTTACACATGTC
CAGTTCTCAAGAGATGGAAATTATCTTTACACTGGAGGCCGAAAGGATCC
TTACATACTGTGCTGGGATCTGCGAAAAGCTGTTCAAGTTGTATATAAGC
TATACAGATCATCAGAACATACTAACCAGCGTATATTGTTTGATATTGAG
CCCTCTGGCAGACATCTTGG
back to top