FC877260

Overview
NameFC877260
Unique NameFC877260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877260_ssr147 microsatellite FC877260_ssr147:147..160. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10436 contig Ccv1_Contig10436:1..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC877260 vs. ExPASy Swiss-Prot
Match: Y4466_ARATH (ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.481e-24
Identity = 51/79 (64.56%), Postives = 59/79 (74.68%), Query Frame = 2 
Query:  470 ATGPTAGGEGASAAARKSIRYRECLKNHAVSIGGHAVDGCGEFMAAGDEGTLESLKCAACNCHRNFHRKETDGASPLAY 706
            AT    GG G S      IRYRECLKNHAV+IGGHAVDGC EFM +G++GTL++LKCAAC CHRNFHRKET+     A+
Sbjct:   29 ATSSGGGGVGRSKGVGAKIRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGGRAH 107
[Close]
BLAST of FC877260 vs. ExPASy Swiss-Prot
Match: Y5541_ARATH (ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.089e-22
Identity = 52/98 (53.06%), Postives = 61/98 (62.24%), Query Frame = 2 
Query:  455 TNASKATGPTAGGEGAS-----AAARKSIRYRECLKNHAVSIGGHAVDGCGEFMAAGDEGTLESLKCAACNCHRNFHRKETDGASPLAYHHQQHQFSP 733
            T + + TG T+ G G              R+RECLKN AV+IGGHAVDGCGEFM AG EGT+++LKCAAC CHRNFHRKE        +HH   Q  P
Sbjct:   45 TESHETTGTTSTGGGGGFMVVHGGGGSRFRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKELP-----YFHHAPPQHQP 137
The following BLAST results are available for this feature:
BLAST of FC877260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y4466_ARATH1.481e-2464.56ZF-HD homeobox protein At4g24660 OS=Arabidopsis th... [more]
Y5541_ARATH3.089e-2253.06ZF-HD homeobox protein At5g65410 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2BE06RM1 EHR Citrus clementina cDNA clone KN0AAN2BE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877260 ID=FC877260; Name=FC877260; organism=Citrus clementina; type=EST; length=743bp
GCACGAGGGTTACGCAATTTTCACAAAATGGAAAGCATAAGAAAGGCTTT
CGAGTAAGGCTTGTCTTTTTTGCATCAATTGATGGCCACACTCTCCTCCA
CCTCTTATCTCCTCTTCTTCTGACCCAGTTTTTCACAAACTAAAAAATAT
ATATATATATACACACTTACTTTGCTTGTATTCATATTTTATTATATTTA
TATTATTATTAATAATAACAACACTCAGAGTTATTACAGCATTTGTGTTT
TAGGTTAGGTTAGCTTATTAGAGCTTAGAGCTGGATCTGCTTACTAGTAA
GTAGTAACCCCCCGGCCATGTAGATCTTCTCCATCAACAATTAACAAAAA
TTAAAGAGATTGAAGATTATTAATTAAGAGAGGAGGAGATGGAATTTGAG
GAGCACGAAGAGCAAGAGGTAGAAGAAATGGGGGCAGCGGAGTACGAGTC
AATGACCAACGCGTCAAAGGCAACGGGCCCCACCGCAGGAGGAGAAGGTG
CATCGGCGGCGGCCAGAAAATCCATCAGGTACCGGGAGTGTCTTAAGAAT
CACGCTGTCAGCATCGGTGGACACGCGGTTGACGGATGCGGGGAGTTCAT
GGCAGCTGGCGACGAAGGCACACTCGAATCCCTCAAATGCGCCGCGTGTA
ACTGCCACAGGAATTTCCACCGTAAGGAAACTGACGGCGCCTCGCCGTTG
GCCTACCATCACCAGCAGCACCAATTCTCGCCTTAATATCGGG
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