FC877264

Overview
NameFC877264
Unique NameFC877264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length440
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig95 contig Ccv1_Contig95:1..440. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.609e-20
Identity = 51/146 (34.93%), Postives = 84/146 (57.53%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWALRDPFS 439
            L++++++Y+ Y  ++T  +D +                  C  LL +V  F K++E  LDALCD ++P  +TE ++++REGDP+DEM+F+++GKL T T N  ++G  +S             ++L  GDF G+EL+ WAL DP S
Sbjct:  437 LRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNS-------------EYLGAGDFCGEELLTWAL-DPHS 568          
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.453e-18
Identity = 47/144 (32.64%), Postives = 82/144 (56.94%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWALRDP 433
            L+++V++Y  Y   +T  +D +                  C NL+++V  F  ++E  LDA+C+ +KP+ FTE T+++REGDP++EM+F+++G+L + T +  +SG  +                L++GDF G+EL+ WAL DP
Sbjct:  453 LRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFN-------------RGLLKEGDFCGEELLTWAL-DP 582          
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 9.301e-18
Identity = 46/144 (31.94%), Postives = 82/144 (56.94%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWALRDP 433
            L+++V++Y  Y   +T  +D +                  C NL+++V  F  ++E  LDA+C+ +KP+ +TE T+++REGDP++EM+F+++G+L + T +  +SG  +                L++GDF G+EL+ WAL DP
Sbjct:  459 LRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFN-------------RGLLKEGDFCGEELLTWAL-DP 588          
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.616e-17
Identity = 47/146 (32.19%), Postives = 81/146 (55.48%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWALRDPFS 439
            L+++V++Y  Y   +T  +D +                  C  L+++V  F+ +++  LDA+C  +KP  FTE T+L+REGDP+DEM+F+++G+L + T +  +SG  +                L++G+F G+EL+ WAL DP S
Sbjct:  449 LRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFN-------------RSLLKEGEFCGEELLTWAL-DPKS 580          
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.616e-17
Identity = 48/146 (32.88%), Postives = 84/146 (57.53%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWALRDPFS 439
            L++++++Y+ Y  ++T  ++ +                  C +LLKKV  F  ++E  LDA+CD +KP  +TE+++ IREGDP++EM+FV++GKL + T N  ++G  ++              +L+  DF G++L+ WAL DP S
Sbjct:  425 LRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNA-------------VYLKPSDFCGEDLLTWAL-DPQS 556          
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.874e-17
Identity = 47/146 (32.19%), Postives = 80/146 (54.79%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWALRDPFS 439
            L+++V++Y  Y   +T  +D +                  C  L+++V  F  ++E  LDA+C+ +KP  FTE ++L+REGDP++EM+F+++G+L + T +  +SG  +                L++GDF G EL+ WAL DP S
Sbjct:  465 LRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYN-------------RSLLKEGDFCGDELLTWAL-DPKS 596          
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.028e-16
Identity = 46/146 (31.51%), Postives = 81/146 (55.48%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWALRDPFS 439
            L+++V++Y  Y   +T  +D +                  C  L+++V  F  ++E  LDA+C+ +KP  +TE ++L+REGDP++EM+F+++G+L + T +  +SG  +                L++GDF G+EL+ WAL DP S
Sbjct:  464 LRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFN-------------RSLLKEGDFCGEELLTWAL-DPKS 595          
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.343e-16
Identity = 49/144 (34.03%), Postives = 78/144 (54.17%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWALRDP 433
            L+Q V+KY  Y    T  +D +                  C++L+++V  F +++E  LDA+C+ +KP   TE T L+REGDP++EM+F+++G L +YT N  ++G  +S               +  GDF G+EL+ WAL DP
Sbjct:  422 LRQAVRKYDQYKWLATRGVDEEALLISLPLDLRRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNS-------------CLIGPGDFCGEELLTWAL-DP 551          
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 8.705e-16
Identity = 47/146 (32.19%), Postives = 84/146 (57.53%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWALRDPFS 439
            L++++++Y+ Y  ++T  ++ +                  C +LLKKV  F  ++E  LDA+CD ++P  +TE++++IREGDP+ EM+FV++G+L + T N  +SG  ++ +             L+  DF G++L+ WAL DP S
Sbjct:  424 LRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVN-------------LKASDFCGEDLLPWAL-DPQS 555          
BLAST of FC877264 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.144e-14
Identity = 42/141 (29.79%), Postives = 75/141 (53.19%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFNDIQSGSTSSDHKRYDGKNTRKEDFLQDGDFYGKELIVWAL 424
            LQ++V+++  Y    T  +D +                  C +L+++V  F ++++  LDA+C C+  +  T  T++ REGDP++EM+FV++G++ + T N  +SG  +S               L+ GDF G+EL+ WAL
Sbjct:  400 LQERVRRFVQYKWLATRGVDEESILHSLPTDLRREIQRHLCLSLVRRVPFFSQMDDQLLDAICGCLVSSLSTAGTYIFREGDPVNEMLFVIRGQIESSTTNGGRSGFFNS-------------TTLRPGDFCGEELLTWAL 527          
The following BLAST results are available for this feature:
BLAST of FC877264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CNGC1_ARATH7.609e-2034.93Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNGC7_ARATH5.453e-1832.64Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC8_ARATH9.301e-1831.94Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC5_ARATH4.616e-1732.19Probable cyclic nucleotide-gated ion channel 5 OS=... [more]
CNG13_ARATH4.616e-1732.88Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC6_ARATH7.874e-1732.19Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC9_ARATH1.028e-1631.51Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNG15_ARATH1.343e-1634.03Putative cyclic nucleotide-gated ion channel 15 OS... [more]
CNG10_ARATH8.705e-1632.19Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNG18_ARATH2.144e-1429.79Putative cyclic nucleotide-gated ion channel 18 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BE12RM1 EHR Citrus clementina cDNA clone KN0AAN2BE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877264 ID=FC877264; Name=FC877264; organism=Citrus clementina; type=EST; length=440bp
TCTCCAGCAAAAGGTGAAGAAATATAAGTCATACATACGGCGAAAAACTG
ATTACATTGATGTACAAAATCTACTCAATAATCTTCCCAATGAACTCAGA
AGAGAACTAAAGCGCGAACTTTGCTGGAATCTGCTAAAGAAAGTACAAGG
GTTCAGGAAGCTAAATGAAGTAACATTGGATGCTCTATGCGATTGCGTAA
AACCAACTTTCTTCACCGAGCACACTCACTTGATTCGTGAAGGAGACCCA
ATTGACGAGATGATCTTTGTAGTGCAAGGCAAACTGCGCACCTACACCTT
TAACGATATACAAAGTGGCTCAACAAGCTCTGATCATAAAAGATATGATG
GCAAAAACACCAGGAAAGAAGATTTTCTGCAAGATGGCGACTTCTATGGA
AAAGAACTTATTGTCTGGGCTTTGAGAGACCCCTTCTCAT
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