FC877268

Overview
NameFC877268
Unique NameFC877268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig359 contig Ccv1_Contig359:18..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC877268 vs. ExPASy Swiss-Prot
Match: UMP2_ARATH (Uncharacterized protein At2g27730, mitochondrial OS=Arabidopsis thaliana GN=At2g27730 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.244e-25
Identity = 65/115 (56.52%), Postives = 86/115 (74.78%), Query Frame = 1 
Query:   61 MASRIAVRNFSRRFSSSGKVLSEEEKAAENVYIKKVEQEKLEKMARKGPKPEETPAASSGSGAEAKPTSAAGASTEKVSTDQYRNYAVIAGIITGVSALGWYLKSSRKKE-QVQD 402
            MA+R A+R  SRRFSS GKVLSEEE+AAENV+IKK+EQEKL+K+AR+GP  +   +AS    A A   SA+  S  KVS D+ RNYAV+AG++  V ++GWYLK+  KK+ +VQ+
Sbjct:    1 MATRNALRIVSRRFSS-GKVLSEEERAAENVFIKKMEQEKLQKLARQGPGEQAAGSASEAKVAGA-TASASAESGPKVSEDKNRNYAVVAGVVAIVGSIGWYLKAGGKKQPEVQE 113
The following BLAST results are available for this feature:
BLAST of FC877268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UMP2_ARATH5.244e-2556.52Uncharacterized protein At2g27730, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2BF04RM1 EHR Citrus clementina cDNA clone KN0AAN2BF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877268 ID=FC877268; Name=FC877268; organism=Citrus clementina; type=EST; length=650bp
GCACGAGGCAAAGCCGAAAAGCTTCCTCCGTGTATCCAAAAGGGTTTTAT
GACCACCATCATGGCTTCAAGGATTGCTGTAAGAAATTTTTCTCGAAGGT
TCTCAAGCAGTGGCAAAGTACTGAGTGAGGAGGAAAAAGCAGCTGAGAAT
GTTTACATCAAAAAAGTTGAGCAAGAGAAATTGGAGAAGATGGCACGCAA
GGGACCCAAGCCGGAAGAGACACCTGCTGCTAGCTCAGGGTCAGGAGCTG
AAGCCAAACCTACCTCAGCCGCGGGAGCTTCAACTGAGAAAGTATCAACT
GACCAGTACCGTAACTATGCAGTCATAGCTGGTATCATAACTGGTGTTAG
TGCTCTCGGATGGTATCTCAAATCAAGCAGGAAGAAAGAACAAGTCCAGG
ACTGAAGTCAATATGCTAGATATAGATAATGAGGGCCATGGACGACATTC
TATCTACGACAACTGCTCACTACTGAGTTCATACATTGCTTGGAAATAAA
CAGAACTTGGATTATTATTGACCCCGTTTGTTTGTATTATTTCTCTTTTG
TTTCGCCAGATACTGGTTGAATTCCAAAGTCTGGCTTTGGTGTTACCAGA
TAAACCTTTGTTAGTAAAAATTCTCTTATTTCAAAAAAAAAAAAAAAAAA
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