FC877289

Overview
NameFC877289
Unique NameFC877289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10366 contig Ccv1_Contig10366:1..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877289 vs. ExPASy Swiss-Prot
Match: ZIP2_ARATH (Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2 PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.136e-90
Identity = 164/250 (65.60%), Postives = 193/250 (77.20%), Query Frame = 3
Query:   15 STFAGGVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLTSKSYPFAFMLASAGYLLTMFGDCIINFVIKQG-----------SKKETRVDVEEEKSEEV--GTDGNPVFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKP 725
            STF  GVSPYFYRWNESFLLLGTQF+GG+FL T+++HFLSD+NETF+ L  K YP+AFMLA+AGY LTM  D  + FV               S+++  V V+EE   E+  G D +    RTS  GDT LLI ALCFHS+FEGIAIG+S TK +AWRNLWTISLHK+FAA+AMGIALL++IPKRPF LT  YSFAF ISSPIGVGIGI I+AT+QG   DW YAISMGLACGVF+YVA+NHLI+KG+KP
Sbjct:   74 STFLAGVSPYFYRWNESFLLLGTQFSGGIFLATALIHFLSDANETFRGLKHKEYPYAFMLAAAGYCLTMLADVAVAFVAAGSNNNHVGASVGESREDDDVAVKEEGRREIKSGVDVSQALIRTSGFGDTALLIFALCFHSIFEGIAIGLSDTKSDAWRNLWTISLHKVFAAVAMGIALLKLIPKRPFFLTVVYSFAFGISSPIGVGIGIGINATSQGAGGDWTYAISMGLACGVFVYVAVNHLISKGYKP 323          
BLAST of FC877289 vs. ExPASy Swiss-Prot
Match: ZIP11_ARATH (Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP11 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.663e-81
Identity = 150/246 (60.98%), Postives = 189/246 (76.83%), Query Frame = 3
Query:   12 VSTFAGGVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLT--------SKSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGTDGNPVFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKP 725
            V TF  GVSPYF +W++ FL+LGTQFAGGVFL T++MHFLSD++ETF+ L         S +YPFA+MLA AG++LTM  D +I  +  + ++ +  +  E++ ++   T         +SIGD+ILLI+ALCFHSVFEGIAIG+S TK +AWR LWTI+LHKIFAAIAMGIALLRMIP RP   +  YSFAFAISSPIGV IGI IDATTQG IADWI+A+SM LACGVF+YV++NHL+AKG++P
Sbjct:   58 VLTFISGVSPYFLKWSQGFLVLGTQFAGGVFLATALMHFLSDADETFRGLLTAEGESEPSPAYPFAYMLACAGFMLTMLADSVIAHIYSK-TQNDLELQGEDKSNQRSATT-------ETSIGDSILLIVALCFHSVFEGIAIGISETKSDAWRALWTITLHKIFAAIAMGIALLRMIPDRPLFSSITYSFAFAISSPIGVAIGIVIDATTQGSIADWIFALSMSLACGVFVYVSVNHLLAKGYRP 295          
BLAST of FC877289 vs. ExPASy Swiss-Prot
Match: S39A1_TAKRU (Zinc transporter ZIP1 OS=Takifugu rubripes GN=slc39a1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 66/234 (28.21%), Postives = 106/234 (45.30%), Query Frame = 3
Query:   57 NESFLLLGTQFAGGVFLGTSMMH----FLSDSN-ETFKDLTSKSYPFAFMLASAGYLLTMFGDCII-NFVIKQGSKKETRVDVEEEKSEEVGTDGNP-----------VFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLI 707
            + + L L + FAGGVFL    +     +LSD N E        S+P    + +AG+   +  + I+ N    + + +E    + E KS      G+            V F+  S   + +L L+L  HS+FEG+AIG+  T  +       I +HK     ++ + L++     P L  AAY   FA+ SP+G+ IGI++    Q      I AI  G A G F+Y+    ++
Sbjct:   41 HRTVLSLISCFAGGVFLSACFLDIIPDYLSDINTELHARQLETSFPLPEFIMAAGFFTVLILERIVLNCKEMRATHEERTTLIPERKSGHGHGHGDGPDPESSGHHVHVDFQAHSPFRSFMLFLSLSLHSIFEGLAIGLQTTDPKVVEICIAILVHKSIIVFSLAVKLVQ--SAIPPLWVAAYIGVFALMSPVGIAIGISV-MEAQLAAGPLIQAILEGFAAGTFVYITFLEIL 271          
BLAST of FC877289 vs. ExPASy Swiss-Prot
Match: S39A1_DANRE (Zinc transporter ZIP1 OS=Danio rerio GN=slc39a1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 59/225 (26.22%), Postives = 95/225 (42.22%), Query Frame = 3
Query:   87 FAGGVFLGTSMMHFLSD-----SNETFKDLTSKSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGTDGNP-------------VFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLI 707
            FAGGVFL   ++  + D       E  K      +P    + + G+   +  + ++     +G + E    +    +      G+P             V F   S   + +L L+L  HSVFEG+AIG+  T  +       I +HK     ++ + L++   K   L    Y   FAI SP+G+GIGI +   T+      I A+  GLA G FIY+    ++
Sbjct:   51 FAGGVFLSACLLDIIPDYLSDIHGELQKRDLDDGFPLPEFIMACGFFTVLILEKMV-LSCTEGHRNEETAPLLAPAAPNGHAHGHPSVNDLEGSGHHVHVDFHAHSSFRSFMLFLSLSLHSVFEGLAIGLQTTNAKVLEICIAILVHKSIIVFSLSVKLVQSAVKP--LWVVLYVTVFAIMSPLGIGIGIVV-IETERQAGGLIQAVLEGLAAGTFIYITFLEIL 271          
BLAST of FC877289 vs. ExPASy Swiss-Prot
Match: ZNTD_DICDI (Protein zntD OS=Dictyostelium discoideum GN=zntD PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 45/129 (34.88%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  330 VFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRP-FLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAK 713
            V  + S+I    +L++AL  HS+FEG+A+GV +++   +  L  I  HKI A+ A+GI+ +    ++P FL      F F+++SPIG  +G+ I     G     +  I  G+A G F+YVA+  +I K
Sbjct:  527 VVTKKSNILLPFILVIALSIHSLFEGLAMGVQSSEIRVFDILIAIFAHKILASFALGISTITSSNEKPSFLKLFLLVFVFSLTSPIGSILGMVI--VGSGVTGSMVPPILQGIASGTFLYVAVVEIIPK 653          
BLAST of FC877289 vs. ExPASy Swiss-Prot
Match: S39A1_BOVIN (Zinc transporter ZIP1 OS=Bos taurus GN=SLC39A1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 60/245 (24.49%), Postives = 110/245 (44.90%), Query Frame = 3
Query:   30 GVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLSDS----NETFKDL-TSKSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGT-DGNPVFFR----------TSSIGDTI---LLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLI 707
            G +P      +  L L + FAGGVFL T ++  L D     +E    L  +  +P    + + G+ L +  +      I    K+++     EE    +GT +G P  +            SS    +   +L+ +L  HSVFEG+A+G+   +  A      + LHK   A+++ + LL+   +    + A     F+  +P+G+G+G A+ A + G +     ++  G+A G F+Y+    ++
Sbjct:   56 GANPEASASRQKALSLVSCFAGGVFLATCLLDLLPDYLGAIDEALAALHVTLQFPLQEFILAMGFFLVLVME-----QITLAYKEQSGPPPREETRALLGTVNGGPQHWHDGLGVPQAGGASSAPSALRACVLVFSLALHSVFEGLAVGLQRDQARAMELCLALLLHKGILAVSLSLRLLQSHLRAQ--VVAGCGILFSCMTPLGIGLGTAL-AESAGPLHQLAQSVLEGMAAGTFLYITFLEIL 292          
BLAST of FC877289 vs. ExPASy Swiss-Prot
Match: S39A3_HUMAN (Zinc transporter ZIP3 OS=Homo sapiens GN=SLC39A3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 64/252 (25.40%), Postives = 113/252 (44.84%), Query Frame = 3
Query:   57 NESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLTS-----KSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEE-EKSEEVGTD------------GNPVFFRTSSIGDTIL--------------LILALCFHSVFEGIAIGVSATKGEAWRNLWT-ISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAK 713
            ++  L L   F GGVFL T     L    E  + + S       YP A  +   G+ +T+F + +I    K+   K + +D+E      +VG+D            G+ ++      G ++               L  AL  HSVFEG+A+G+   +GE   +L+  +++H+   A+A+GI++ R     P    A  +   +   P+G+G+G+ I+ + QG        +  GLA G F+++    ++AK
Sbjct:   40 SKKILSLCNTFGGGVFLATCFNALLPAVREKLQKVLSLGHISTDYPLAETILLLGFFMTVFLEQLILTFRKE---KPSFIDLETFNAGSDVGSDSEYESPFMGGARGHALYVEPHGHGPSLSVQGLSRASPVRLLSLAFALSAHSVFEGLALGLQ-EEGEKVVSLFVGVAVHETLVAVALGISMAR--SAMPLRDAAKLAVTVSAMIPLGIGLGLGIE-SAQGVPGSVASVLLQGLAGGTFLFITFLEILAK 284          
BLAST of FC877289 vs. ExPASy Swiss-Prot
Match: S39A3_BOVIN (Zinc transporter ZIP3 OS=Bos taurus GN=SLC39A3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 65/251 (25.90%), Postives = 111/251 (44.22%), Query Frame = 3
Query:   57 NESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLT-----SKSYPFAFMLASAGYLLTMFGDCIINFVIKQ----------GSKKETRVDVEEEKSEEVGTDGNPVF--------------FRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWT-ISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISS--PIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAK 713
            ++  L L   F GGVFL T     L    E  K++      S  YP A  +   G+ +T+F + ++    K+           +  +   D E E     G  G+ ++                 SS    + L+ AL  HSVFEG+A+G+   +GE   +L+  +++H+   A+A+GI + R        L  A   A  +S+  P+G+ +G+ I+ + QG  +     +  GLA G F++V    ++AK
Sbjct:   40 SKKILSLCNTFGGGVFLATCFNALLPAVREKLKEVLTLAHISTDYPLAETIMLLGFFMTVFLEQLVLTFRKERPAFIDLETFNASSDAGSDSEYESPFMGGPRGHALYAEPHGHSHGLSVQELSRSSPLRLLSLVFALSAHSVFEGLALGLQ-EEGEKVVSLFVGVAIHETLVAVALGINMAR----SAMALRDAAKLAVTVSAMIPLGISLGLGIE-SAQGMPSSVASVLLQGLAGGTFLFVTFFEILAK 284          
BLAST of FC877289 vs. ExPASy Swiss-Prot
Match: S39A1_HUMAN (Zinc transporter ZIP1 OS=Homo sapiens GN=SLC39A1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 56/232 (24.14%), Postives = 103/232 (44.40%), Query Frame = 3
Query:   69 LLLGTQFAGGVFLGTSMMHFLSDSNETFKDLTSK-----SYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGT-DGNPVFFR-------------TSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLI 707
            L L + FAGGVFL T ++  L D      +  +       +P    + + G+ L +  +      I    K+++     EE    +GT +G P  +              T S     +L+ +L  HSVFEG+A+G+   +  A      + LHK   A+++ + LL+   +    + A     F+  +P+G+G+G A+ A + G +     ++  G+A G F+Y+    ++
Sbjct:   69 LSLVSCFAGGVFLATCLLDLLPDYLAAIDEALAALHVTLQFPLQEFILAMGFFLVLVME-----QITLAYKEQSGPSPLEETRALLGTVNGGPQHWHDGPGVPQASGAPATPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLRAQ--VVAGCGILFSCMTPLGIGLGAAL-AESAGPLHQLAQSVLEGMAAGTFLYITFLEIL 292          
BLAST of FC877289 vs. ExPASy Swiss-Prot
Match: S39A1_MOUSE (Zinc transporter ZIP1 OS=Mus musculus GN=Slc39a1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 59/232 (25.43%), Postives = 105/232 (45.26%), Query Frame = 3
Query:   69 LLLGTQFAGGVFLGTSMMHFLSDS----NETFKDL-TSKSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGT-DGNPVFFRTS----SIGDT---------ILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLI 707
            L L + FAGGVFL T ++  L D     +E  + L  +  +P    + + G+ L +  + I     +Q S         EE    +GT +G P  +         G T          +L+ +L  HSVFEG+A+G+   +  A      + LHK   A+++ + LL+   +    + A     F+  +P+G+G+G A+ A + G +     ++  G+A G F+Y+    ++
Sbjct:   69 LSLVSCFAGGVFLATCLLDLLPDYLAAIDEALEALHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQSSPPHP-----EETRALLGTVNGGPQHWHDGPGIPQAGGTPAAPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLR--VQVVAGCGILFSCMTPLGIGLGAAL-AESAGPLHQLAQSVLEGMAAGTFLYITFLEIL 292          
The following BLAST results are available for this feature:
BLAST of FC877289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ZIP2_ARATH1.136e-9065.60Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2... [more]
ZIP11_ARATH3.663e-8160.98Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP... [more]
S39A1_TAKRU1.123e-1328.21Zinc transporter ZIP1 OS=Takifugu rubripes GN=slc3... [more]
S39A1_DANRE1.123e-1326.22Zinc transporter ZIP1 OS=Danio rerio GN=slc39a1 PE... [more]
ZNTD_DICDI1.622e-1234.88Protein zntD OS=Dictyostelium discoideum GN=zntD P... [more]
S39A1_BOVIN2.343e-1124.49Zinc transporter ZIP1 OS=Bos taurus GN=SLC39A1 PE=... [more]
S39A3_HUMAN3.059e-1125.40Zinc transporter ZIP3 OS=Homo sapiens GN=SLC39A3 P... [more]
S39A3_BOVIN3.059e-1125.90Zinc transporter ZIP3 OS=Bos taurus GN=SLC39A3 PE=... [more]
S39A1_HUMAN3.059e-1124.14Zinc transporter ZIP1 OS=Homo sapiens GN=SLC39A1 P... [more]
S39A1_MOUSE5.219e-1125.43Zinc transporter ZIP1 OS=Mus musculus GN=Slc39a1 P... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2BH05RM1 EHR Citrus clementina cDNA clone KN0AAN2BH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877289 ID=FC877289; Name=FC877289; organism=Citrus clementina; type=EST; length=727bp
GCACGAGGCTAGTAAGCACTTTTGCTGGTGGCGTTTCGCCTTACTTTTAT
CGATGGAACGAGAGTTTTCTTCTCCTCGGAACCCAATTTGCTGGCGGGGT
TTTTCTTGGGACGTCGATGATGCATTTCTTGAGTGATTCCAATGAAACTT
TCAAAGATTTAACATCCAAAAGTTACCCTTTTGCATTCATGCTAGCATCC
GCGGGTTATCTTTTAACCATGTTCGGTGATTGCATAATCAATTTTGTTAT
AAAGCAGGGTAGCAAAAAAGAAACTAGAGTGGATGTTGAAGAAGAGAAAA
GTGAAGAAGTGGGAACCGATGGTAATCCAGTTTTCTTCAGGACAAGTTCC
ATTGGAGACACCATTCTTCTCATTCTCGCCCTCTGTTTCCACTCAGTTTT
CGAAGGCATTGCCATTGGAGTTTCAGCTACCAAGGGAGAGGCTTGGAGGA
ATCTATGGACGATATCGTTGCACAAAATATTTGCAGCAATTGCAATGGGA
ATTGCACTGCTGAGGATGATACCGAAGAGGCCATTTTTGCTAACTGCGGC
TTACTCATTTGCCTTCGCGATTTCTAGTCCAATTGGTGTGGGGATAGGCA
TTGCCATTGACGCCACAACTCAAGGGCATATTGCTGATTGGATTTATGCA
ATTTCAATGGGACTTGCTTGTGGGGTTTTCATATATGTTGCCATCAACCA
TCTCATTGCCAAAGGGTTTAAGCCACA
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