FC877291

Overview
NameFC877291
Unique NameFC877291
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6315 contig Ccv1_Contig6315:369..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877291 vs. ExPASy Swiss-Prot
Match: GBF4_ARATH (G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.041e-19
Identity = 56/99 (56.57%), Postives = 64/99 (64.65%), Query Frame = 2
Query:   11 RGKRRIVEEPPMDKATQQKQRRMIKNRESAARSRERKQAYTVELESLVTQXXXXXXXXXXXXXXQNKQRFKQLMENLIPVVEKRRPP-RVLRRVNSLHW 304
            RGKR  V    MDKA  Q+Q+RMIKNRESAARSRERKQAY VELE+L  +                K+R+K+LME LIPV EK RPP R L R +SL W
Sbjct:  172 RGKRGRVMMEAMDKAAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLLKEIEESTKERYKKLMEVLIPVDEKPRPPSRPLSRSHSLEW 270          
BLAST of FC877291 vs. ExPASy Swiss-Prot
Match: ABI5_ARATH (Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis thaliana GN=ABI5 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 2
Query:   11 RGKRRIVEEPPMDKATQQKQRRMIKNRESAARSRERKQAYTVELESLVTQXXXXXXXXXXXXXXQNKQRFKQLMENLIPVVEKRRP 268
            RG++R+V+ P ++K  +++QRRMIKNRESAARSR RKQAYTVELE+ + Q                ++R +Q  E+L    + + P
Sbjct:  341 RGRKRVVDGP-VEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENAQLKHALAELERKRKQQYFESLKSRAQPKLP 425          
The following BLAST results are available for this feature:
BLAST of FC877291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GBF4_ARATH1.041e-1956.57G-box-binding factor 4 OS=Arabidopsis thaliana GN=... [more]
ABI5_ARATH8.832e-1143.02Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2BH07RM1 EHR Citrus clementina cDNA clone KN0AAN2BH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877291 ID=FC877291; Name=FC877291; organism=Citrus clementina; type=EST; length=721bp
GCACGAGGGGAGAGGGAAGAGGCGAATTGTTGAAGAGCCACCCATGGATA
AGGCAACTCAGCAAAAGCAGAGGAGAATGATCAAGAACCGAGAGTCTGCT
GCAAGGTCCAGAGAGCGAAAGCAGGCGTACACAGTTGAATTGGAGTCGCT
GGTGACGCAGCTGGAGGAGGAGAAAGCACGGCTGCTGAGGGAAGAGGCTG
AGCAGAACAAGCAGAGGTTTAAGCAGCTCATGGAGAATCTTATTCCTGTT
GTTGAGAAGAGAAGACCACCTCGTGTTCTTCGAAGAGTGAACTCATTGCA
CTGGTAGGTGAGGTGTGTTATCAACCGTCAATTGTTAGCTTAGACTAAAG
AAATAGTCTGGCTTTGCAGCTTACGCAGCCTGCCATTGAGACTATATCAG
ATAGAATAAGATGAAGATGGGGGGAAATGCTCGGGATTAATTTCCCTTTG
GTAGCTGATGCAGCCAGAGACTTTAAATAATTTAATCAAAATTGAAGATG
GATGTTTAAATCACTGCTTAATGAGATCCCTGACAAAATTTGTAGTGGAT
TATTTTAATTAGGGCACTGTAAAATTTGTTTTCTTTTTCTTAATATCATT
TTAGGAAAGCTCGGGATCTCTTTATTTTGCTGCAGGAAGGAAACCCCAAT
TGATCTGTGTCCGCCTGTACTAATTAAATGTGTCGACCTGTACTAATTAA
ATGTGTCGTGTGTTTGTATAT
back to top