FC877294

Overview
NameFC877294
Unique NameFC877294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10408 contig Ccv1_Contig10408:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877294 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 3.826e-12
Identity = 20/49 (40.82%), Postives = 33/49 (67.35%), Query Frame = 3
Query:  513 GEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDER 659
            GE  +++PC H +H +CI  WLG + SCPVCR+++  ++ E   +R +R
Sbjct:  267 GETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEERKKR 315          

HSP 2 Score: 35.039 bits (79), Expect = 3.826e-12
Identity = 20/59 (33.90%), Postives = 32/59 (54.24%), Query Frame = 2
Query:  341 IEGTSSLETLLRNFV--------GKDGQPPASKASVEAMPSIKVGESEEEALGGECVVC 493
            I+  +  E LL+N          G+ G PPA+K+++EA+ + +V  SE E +   C VC
Sbjct:  203 IDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMV-MVCAVC 260          
BLAST of FC877294 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.464e-11
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 3
Query:  513 GEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDERRR 665
            GE  R++PC+H FH+ CI  WLG   SCP+CR+++P +  +    + E+ R
Sbjct:   89 GETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSPDYEEFKQEKAR 139          

HSP 2 Score: 32.3426 bits (72), Expect = 1.464e-11
Identity = 16/36 (44.44%), Postives = 23/36 (63.89%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYE 508
            PPASK  VE++P + V   + +A   +C VCL E+E
Sbjct:   53 PPASKKVVESLPKVTVTPEQADA-ALKCPVCLLEFE 87          
BLAST of FC877294 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 1.901e-11
Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 3
Query:  516 EVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVE--EEESGNKRDERRRE 668
            E  REMPCKH FH  CI  WL    SCP+CR ++P +  + E   K  ERRR+
Sbjct:   90 ESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNADYEEFKKDKERRRQ 142          

HSP 2 Score: 31.9574 bits (71), Expect = 1.901e-11
Identity = 20/67 (29.85%), Postives = 34/67 (50.75%), Query Frame = 2
Query:  308 LVNPLNQGMVVIEGTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYE 508
            L   L QG+ +  G+  L    +        PPA+KA V+++P + +   + +  G +C VCL E+E
Sbjct:   27 LARSLMQGLDIDSGSFDLSDWDQRL-----PPPAAKAVVQSLPVVIISPEQADK-GVKCPVCLLEFE 87          
The following BLAST results are available for this feature:
BLAST of FC877294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CIP8_ARATH3.826e-1240.82E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN181_XENLA1.464e-1141.18E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]
RN181_DANRE1.901e-1149.06E3 ubiquitin-protein ligase rnf181 OS=Danio rerio ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2BH10RM1 EHR Citrus clementina cDNA clone KN0AAN2BH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877294 ID=FC877294; Name=FC877294; organism=Citrus clementina; type=EST; length=708bp
GCACGAGGCTTCTTCTCCTTTTTTTTTTCCTCTTAAAAATCGGATTGTTG
ATCACCCTAGTACAGATCTCTCAAAAAAGATTTGATCTTTCTGTCAAAAT
TTCATTCTTTCGATGTCCTCTGAAGCTGAAGCTACTGATGTCTCATCGCT
GTTTGAGAGACTGTTAAGTCACAGAGACATGTCTTTGTTTCTACCCTTTG
TCTTAGGCTTCACAAGCAGCGTCTCCACAGGTGAAAGTTCCGAGAATTCT
CAGAACCCGGATGGGGAAACCCCTCATACAAACAGAAGTTCAAGCGAAAG
AATCATTCTCGTCAATCCTCTCAATCAGGGCATGGTAGTGATTGAAGGGA
CTTCAAGTTTAGAGACTCTGCTGAGAAATTTCGTTGGTAAAGATGGCCAG
CCTCCTGCTTCAAAGGCATCGGTTGAGGCCATGCCAAGTATCAAAGTCGG
TGAAAGCGAAGAGGAAGCTCTTGGTGGTGAGTGTGTCGTGTGTTTAGAGG
AGTATGAGNGTTGGGGAGGTGGCGAGAGAGATGCCATGTAAGCACAAGTT
TCATGCAAACTGTATAGAGAAGTGGCTTGGGATTCAGGGGTCGTGTCCTG
TTTGTAGATACAAGATGCCTGTTGAAGAAGAGGAAAGTGGCAACAAAAGA
GATGAGCGAAGGAGAGAAATTTGGGTTAGTTTTTCAATCAGTGGTGGTGG
TAGAAGAA
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