FC877294
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877294 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 3.826e-12 Identity = 20/49 (40.82%), Postives = 33/49 (67.35%), Query Frame = 3 Query: 513 GEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDER 659 GE +++PC H +H +CI WLG + SCPVCR+++ ++ E +R +R Sbjct: 267 GETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEERKKR 315 HSP 2 Score: 35.039 bits (79), Expect = 3.826e-12 Identity = 20/59 (33.90%), Postives = 32/59 (54.24%), Query Frame = 2 Query: 341 IEGTSSLETLLRNFV--------GKDGQPPASKASVEAMPSIKVGESEEEALGGECVVC 493 I+ + E LL+N G+ G PPA+K+++EA+ + +V SE E + C VC Sbjct: 203 IDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMV-MVCAVC 260
BLAST of FC877294 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 1.464e-11 Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 3 Query: 513 GEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDERRR 665 GE R++PC+H FH+ CI WLG SCP+CR+++P + + + E+ R Sbjct: 89 GETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSPDYEEFKQEKAR 139 HSP 2 Score: 32.3426 bits (72), Expect = 1.464e-11 Identity = 16/36 (44.44%), Postives = 23/36 (63.89%), Query Frame = 2 Query: 401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYE 508 PPASK VE++P + V + +A +C VCL E+E Sbjct: 53 PPASKKVVESLPKVTVTPEQADA-ALKCPVCLLEFE 87
BLAST of FC877294 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2) HSP 1 Score: 57.7658 bits (138), Expect = 1.901e-11 Identity = 26/53 (49.06%), Postives = 32/53 (60.38%), Query Frame = 3 Query: 516 EVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVE--EEESGNKRDERRRE 668 E REMPCKH FH CI WL SCP+CR ++P + + E K ERRR+ Sbjct: 90 ESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNADYEEFKKDKERRRQ 142 HSP 2 Score: 31.9574 bits (71), Expect = 1.901e-11 Identity = 20/67 (29.85%), Postives = 34/67 (50.75%), Query Frame = 2 Query: 308 LVNPLNQGMVVIEGTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYE 508 L L QG+ + G+ L + PPA+KA V+++P + + + + G +C VCL E+E Sbjct: 27 LARSLMQGLDIDSGSFDLSDWDQRL-----PPPAAKAVVQSLPVVIISPEQADK-GVKCPVCLLEFE 87 The following BLAST results are available for this feature:
BLAST of FC877294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877294 ID=FC877294; Name=FC877294; organism=Citrus clementina; type=EST; length=708bpback to top |