FC877797

Overview
NameFC877797
Unique NameFC877797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3227 contig Ccv1_Contig3227:1..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877797 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.779e-16
Identity = 69/229 (30.13%), Postives = 113/229 (49.34%), Query Frame = 3
Query:  231 MDSRQIIGCGVTSAGISYSSSCPTVPSIPNRLF--GPLKFDVGNSPNSPFSNQFECDTITSLSDSQEQHSPSDNPSGLSPSCDSSLESNSYFHQLSPAVDSLILFSGGTSYLQNANSSQKIKHVLQELETVLMGPDEEEAAKPNTSYGGSSKP-QAPGDRPRSWSQEHHGSHVIQPQPSFISRYRQSAEGAQIENSQM--AIGESSLQGFPIRHLKQLLIACAKALSEN 902
            MD  Q++   +T A + Y    PT  ++ N  +   PLK++  +SP +P S+QFECD +++L+++ +  S ++    +S    S LE++S + Q    +   I       Y   A S   ++H L+E+ETVLM PD ++A           KP Q    R R+WS E       QP P  + R + ++ G    + +      +  L+  P   +KQLL  CA+ALSE+
Sbjct:    1 MDLHQLLKYRLTGANVVYE--IPTENNLQNSPWQANPLKYEFSDSPYTPLSSQFECDNLSALTNTPDNQSSTET---ISAQPISPLEADSSYRQAGILLQENIQVGADPLY---ATSRHNMQHALREIETVLMAPDTDDATTSTKHEFEEIKPAQLVRQRSRTWSHESR-----QPLPG-VGRSQFASGGYPTASYEFRPEKRQRELREDPQIIVKQLLTRCAEALSED 215          
The following BLAST results are available for this feature:
BLAST of FC877797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CIGR1_ORYSJ2.779e-1630.13Chitin-inducible gibberellin-responsive protein 1 ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA24CC06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA24CC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877797 ID=FC877797; Name=FC877797; organism=Citrus clementina; type=EST; length=933bp
TCAAAACCAAAACACCGAGCTGAAAAAACGCAGAACACAGAAGCTACTGT
TTCTTCCTTAGAAATATTCACAGGTTAATTTTTTGAAGTCCATAGTTTGA
GTTATTTGTGGTGGAATTGTAAAGTTGATTGCAGTTGTTGACCAAAGAAG
GTCTAGTTGATTTGTATCTGAGGCAGAGATATTATTTCCGGATTGTTATT
ATAGACAAGAGCTGATGCTAAAACCATAATATGGACTCTCGCCAGATTAT
TGGATGTGGTGTAACTAGTGCAGGCATATCTTACTCGTCTTCTTGTCCTA
CTGTGCCTTCAATTCCCAATAGGTTGTTTGGGCCTCTGAAATTTGACGTT
GGAAACTCGCCTAACTCACCTTTTTCAAATCAGTTTGAGTGTGATACCAT
CACTTCATTGAGTGATAGCCAGGAGCAGCACAGCCCCTCGGACAATCCTT
CTGGGCTCAGCCCCTCTTGCGATTCCTCACTGGAGTCCAACAGTTATTTT
CATCAGTTAAGCCCTGCTGTGGACAGTCTAATTCTCTTTTCTGGTGGGAC
TTCATATCTGCAGAATGCAAATAGTAGCCAGAAAATAAAACACGTTTTGC
AGGAGTTAGAGACTGTACTAATGGGGCCCGATGAAGAAGAAGCAGCAAAA
CCAAATACTTCTTATGGGGGAAGTAGTAAGCCGCAAGCACCTGGCGACAG
ACCTAGGTCTTGGAGCCAAGAACACCATGGTTCACATGTGATTCAGCCTC
AGCCGTCCTTCATTTCTAGGTATAGGCAGTCAGCTGAAGGTGCTCAAATT
GAGAACAGTCAGATGGCAATTGGGGAATCATCTCTGCAGGGCTTTCCCAT
CAGGCATCTGAAGCAGTTATTAATTGCATGCGCTAAAGCTCTCTCTGAAA
ACACATTAATGATTTTGATAAGTTGATTGAAAG
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