FC877803

Overview
NameFC877803
Unique NameFC877803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length810
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877803_ssr100 microsatellite FC877803_ssr100:100..114. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877803_ssr115 microsatellite FC877803_ssr115:115..129. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6009 contig Ccv1_Contig6009:1..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC877803 vs. ExPASy Swiss-Prot
Match: HEMK_SYNY3 (Protein hemK homolog OS=Synechocystis sp. (strain PCC 6803) GN=sll1237 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.847e-11
Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = 1 
Query:  304 ELNWLIEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGT 621
            ELNWL++   +   L  +L      + + L+   + +   W++R+E++ P QYL+G   WRD V+ V + V IPRPETEL++D+V       +       WVDLGT
Sbjct:   31 ELNWLLQGWTDLDRLTLRLQ-DFAHREIALQETWENIQRGWRRRVEEKYPVQYLLGQTQWRDFVIKVTDDVLIPRPETELIIDIVQHEHSALSPSNCADHWVDLGT 135
The following BLAST results are available for this feature:
BLAST of FC877803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HEMK_SYNY32.847e-1135.85Protein hemK homolog OS=Synechocystis sp. (strain ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA58BG06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877803 ID=FC877803; Name=FC877803; organism=Citrus clementina; type=EST; length=810bp
ATGAGGGTAAGCTTAACCCGCGCATGCCGTTTCTATACATCACCAATCAC
TCCAAAACCCTCTTTTTTTTCACCTCGCGCCATTTTAAATCAACCCTTTT
CATCATCATCATCATCTTCTTCTTCTTCTTCACATTCTTCAACCCCAAAA
CCCAAAACTCCACTCTTTTTAAAGCCACCAAAGTACTCAGCAACACTCTC
CGACCTCAAAAAATGGCACAATTGGGCCAAAGCCCTCGCCTCCTCCGTGC
GGTCCACTTTTGCTGACGCAGACAACGGCCCTGACTCCTCTATCCTGTTC
CGAGAACTCAACTGGCTCATTGAAGACTCGCTCGAAGACCCGTCACTGAT
TCCTCAACTGGGTTTTCAAAACAATTCTCAAAGTGTGAGATTACGAATTG
GATTGGATGAGTTGTATGGTTTGTGGAAGCAGAGGATTGAAAAGAGAAAG
CCATTTCAGTATTTGGTTGGGTGTGAGCATTGGAGGGACTTGGTGTTGAG
TGTTGAAGAAGGGGTTTTTATTCCGAGGCCGGAGACTGAGTTGATGGTTG
ATTTGGTGAGTGATGTTTTGGTTAGAGATAATGACGGGTTAAGAGATGGG
TTTTGGGTTGATTTGGGGACTGGCTCTGGTGCCATTGCTATTGGGATTGC
TAGAGTTTTGGGAAGTAAAGGGAGTATCATTGCTGTTGATTTGAATCCTT
TGGCTGCTGCAGTGGCGGCTTTTAATGCCCAGAGGTATGGACTACAGGAT
ATAATTGAGATACGGCAAGGATCTTGGTTTGGAAAATTAAAGGATGTTGA
AGGAAAACTT
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