FC877804

Overview
NameFC877804
Unique NameFC877804
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length885
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11498 contig Ccv1_Contig11498:25..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877804 vs. ExPASy Swiss-Prot
Match: ANTA_GENTR (Anthocyanin 5-aromatic acyltransferase OS=Gentiana triflora PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.471e-24
Identity = 84/286 (29.37%), Postives = 150/286 (52.45%), Query Frame = 3
Query:   45 ELTLPLTYFDILWLKFPPVERIFFYEITGLASDFFNSEIVPRXXXXXXXXXXXXXXXAGSIVWRPXXXXXXXXPVIYYSPDDDDYGVSVTVAVS-SNNDFSHLSGNGIRGDVEFHPL---VPQL--SISDNKA-EIVAAQITLFPDRGFSIGVSSHHAILDGKSTTMFVKSWAYLCKQLAELEQEPSNVNVLPELLTPVFDRTLIKDPKGLYMRYFN-----MWFSSDPNSKPSLKVLPPVSVDFNKLVRASFVLTREDIKKLRDSINDLNDSKQKQLHLSTYVLT 866
            EL+LP+T+FDI WL    ++ + FY+     + F ++ ++P                +G+++           P   YS D+ D   S+T+ V+ S+ DF +L G+ +    + H L   +P++  ++ D K   +VA Q+T+FP+RG ++ +++HH+I D KS  MF+ +WAY+ K          + ++L   L P FDR++IKD  GL   ++N     +   S   SKP           FNK VRA++VL+  +I+KL++ + +L  S +  + ++T+ +T
Sbjct:   25 ELSLPVTFFDIPWLHLNKMQSLLFYDFPYPRTHFLDT-VIPNLKASLSLTLKHYVPLSGNLLM---PIKSGEMPKFQYSRDEGD---SITLIVAESDQDFDYLKGHQLVDSNDLHGLFYVMPRVIRTMQDYKVIPLVAVQVTVFPNRGIAVALTAHHSIADAKSFVMFINAWAYINK-------FGKDADLLSANLLPSFDRSIIKDLYGLEETFWNEMQDVLEMFSRFGSKPP---------RFNK-VRATYVLSLAEIQKLKNKVLNLRGS-EPTIRVTTFTMT 285          
The following BLAST results are available for this feature:
BLAST of FC877804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ANTA_GENTR7.471e-2429.37Anthocyanin 5-aromatic acyltransferase OS=Gentiana... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA12AG07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877804 ID=FC877804; Name=FC877804; organism=Citrus clementina; type=EST; length=885bp
TTACCAAAGTCACCCCCTTGAGATCTCACTCAAGTTCAGCACAGGAGTTA
ACTCTTCCTCTCACCTATTTTGATATTTTATGGTTAAAGTTTCCACCTGT
GGAGCGCATCTTCTTCTATGAAATCACAGGCTTAGCCTCTGATTTCTTCA
ACTCTGAAATAGTCCCCAGGCTGAAGCACTCTCTGTCCCTCACCCTCCTT
CATTACCTCCCCCTCGCCGGCAGCATCGTCTGGCGACCCCAAGCTCAAGA
CCAGCAGCAACAGCCAGTCATCTACTACTCTCCTGACGACGATGATTATG
GTGTTTCAGTCACGGTAGCCGTGTCTAGTAACAATGACTTCAGTCACCTC
TCCGGCAACGGGATCCGTGGAGATGTTGAATTCCATCCGCTGGTGCCCCA
GTTGTCGATATCCGACAACAAAGCTGAGATAGTTGCTGCCCAAATAACTC
TGTTTCCGGATCGGGGCTTTTCCATTGGGGTTTCATCTCACCATGCAATT
CTTGATGGCAAAAGCACAACTATGTTTGTGAAATCTTGGGCTTATTTATG
CAAACAATTGGCGGAGTTAGAACAAGAACCCTCCAATGTAAATGTGTTAC
CGGAGCTATTAACTCCAGTTTTTGATCGGACTCTCATCAAAGATCCGAAA
GGTCTGTACATGAGGTACTTTAATATGTGGTTTTCTTCGGATCCCAACAG
CAAACCAAGCTTGAAGGTTTTGCCACCAGTCTCGGTGGATTTTAACAAAT
TGGTTCGAGCCTCATTTGTATTAACCCGTGAAGATATTAAGAAGCTCAGA
GATAGTATTAATGATCTAAATGATTCAAAACAAAAACAACTTCATTTATC
GACTTATGTGCTTACATTAGCTAATGCATATGTTT
back to top