FC877810

Overview
NameFC877810
Unique NameFC877810
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length969
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13214 contig Ccv1_Contig13214:5..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877810 vs. ExPASy Swiss-Prot
Match: TM1L2_HUMAN (TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.196e-25
Identity = 82/273 (30.04%), Postives = 125/273 (45.79%), Query Frame = 3
Query:  225 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS----------ERSAPVFTPPQTHPLTSYPQNFRNPEHQQXXXXXXXXXXFPTLSLT---------------EIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVXLVDQCRTYKQRVVHLVISTADESL 956
            V   +++AT   L   DW +N+EICD++N      KD ++ +KKR+ G+RN +  +LALT+LET +KNCG   H+ VA ++ +   +VKI   K  P T V++K+L LI  W +AF               EL R G  FP             +RS P   P  T P +   Q      +             P LS+T               E+   RG   V++EML  + P  ++    E++  L   CR  +QR+V L+   ++E +
Sbjct:   13 VGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRS-SPDLTGVVHIYEELKRKGVEFPMADLDALSPIHTPQRSVPEVDPAATMPRSQSQQRTSAGSYSSPPPAPYSAPQAPALSVTGPITANSEQIARLRSELDVVRGNTKVMSEMLTEMVPGQEDSSDLELLQELNRTCRAMQQRIVELISRVSNEEV 284          
BLAST of FC877810 vs. ExPASy Swiss-Prot
Match: TM1L2_MOUSE (TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.478e-25
Identity = 81/273 (29.67%), Postives = 129/273 (47.25%), Query Frame = 3
Query:  225 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTP----PQTHPLTSYPQNFRNPE-----HQQXXXXXXXXXXFPTLSLT---------------EIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVXLVDQCRTYKQRVVHLVISTADESL 956
            V   +++AT   L   DW +N+EICD++N      KD ++ +KKR+ G+RN +  +LALT+LET +KNCG   H+ VA ++ +   +VKI   K  P T V++K+L LI  W +AF               EL R G  FP    +  +P+ TP    P+  P  + P++   P      +             P LS+T               E+   RG   V++EML  + P  ++    E++  L   CR  + R+V L+   ++E +
Sbjct:   13 VGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLALTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAFRS-SPDLTGVVHIYEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQPRTTAGTYSSPPPASYSTLQAPALSVTGPITANSEQIARLRSELDIVRGNTKVMSEMLTEMVPGQEDSSDLELLQELNRTCRAMQHRIVELISRVSNEEV 284          
BLAST of FC877810 vs. ExPASy Swiss-Prot
Match: TM1L2_XENLA (TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.568e-24
Identity = 81/275 (29.45%), Postives = 131/275 (47.64%), Query Frame = 3
Query:  225 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTP--------PQTHPLTSYPQ---NFRNPEHQQXXXXXXXXXXFPTLSL---------------TEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVXLVDQCRTYKQRVVHLVISTADESL 956
            V   +++AT   L   DW +N+EICD++N      KD ++ +KKR+ G+RN +  +LALT+LET +KNCG   H+ V  ++ +   +VKI   K  P T V++K+L LI  W +AF               EL R G  FP    +  +P+ TP        P T+  TS  Q   +F N  + +           P  ++               +E+   RG + V++EML  + P  +     E++  L   CRT ++R+V L+   ++E +
Sbjct:   13 VGQCIEKATDGSLQSEDWTLNMEICDIINETEEGPKDAMRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHVQVTHRDFIDGILVKIISPKNNPPTIVQDKVLALIQAWADAFRSSPDLTGVVHIYE-ELKRKGIEFPMADLDALSPIHTPQRSVPEVDPATNMHTSQTQKRDSFSNLSNSKSTSTPYTAPGGPPPNVGGPISANSEQIGRLRSELDIVRGNVKVMSEMLTEMTPGQEGASDLELLQDLNRTCRTMQERIVELISRVSNEEV 286          
BLAST of FC877810 vs. ExPASy Swiss-Prot
Match: TOM1_MOUSE (Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.252e-23
Identity = 78/269 (29.00%), Postives = 127/269 (47.21%), Query Frame = 3
Query:  225 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK---IARKKPDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTPPQT--HPLTSYPQNFRNPEHQQXXXXXXXXXXFPTLSL------------------TEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVXLVDQCRTYKQRVVHLVISTADESL 956
            V   +++AT   L   DWA+N+EICD++N      KD  + +KKRI G++N    +LALT+LET +KNCG   H+ VA ++ +  ++    + +  P T V +K+L LI +W +AF               +L R G  FP    +  +P+ TP +T  +  T   QN  +    Q           PT ++                  +E++   G + V++EML  L P   E    E++  L   CR  +QR++ L+   ++E L
Sbjct:   13 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIMGNKNFHEVMLALTVLETCVKNCGHRFHVLVANQDFVENVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS-SPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETPSRQNSVSSNTSQRGDLSQHATPLPTPAVLPGDSPITPTPEQIGKLRSELEMVSGNVRVMSEMLTELVPTQVEPADLELLQELNRTCRAMQQRILELIPRISNEQL 280          
BLAST of FC877810 vs. ExPASy Swiss-Prot
Match: TOM1_HUMAN (Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 4.252e-23
Identity = 78/269 (29.00%), Postives = 126/269 (46.84%), Query Frame = 3
Query:  225 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK---IARKKPDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTPPQT--HPLTSYPQNFRNPEHQQXXXXXXXXXXFPTLSL------------------TEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVXLVDQCRTYKQRVVHLVISTADESL 956
            V   +++AT   L   DWA+N+EICD++N      KD ++ +KKRI G++N    +LALT+LET +KNCG   H+ VA ++ +  ++    + +  P T V +K+L LI +W +AF               +L R G  FP    +  +P+ TP +T  +  T   Q+    +  Q           P   +                  +E++   G + V++EML  L P   E    E++  L   CR  +QRV+ L+   A+E L
Sbjct:   13 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS-SPDLTGVVTIYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETQSGQDSVGTDSSQQEDSGQHAAPLPAPPILSGDTPIAPTPEQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQL 280          
BLAST of FC877810 vs. ExPASy Swiss-Prot
Match: TOM1_CHICK (Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 5.553e-23
Identity = 79/269 (29.37%), Postives = 123/269 (45.72%), Query Frame = 3
Query:  225 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK---IARKKPDTHVKEKILILIDTWQEAFGGXXXXXXXXXXXXXELLRAGAVFPQRS-ERSAPVFTP-----------PQTHPLTSYPQNFRNPEHQQXXXXXXXXXXFPTLSLT---------EIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVXLVDQCRTYKQRVVHLVISTADESL 956
            V   ++RAT   L G DW++N+EICD++N      KD  + IKKRI G++N    +LALT+LET +KNCG   H+ VA ++ +  ++    + +  P   V +K+L LI +W +AF               +L R G  FP    +  +P+ TP            Q  P  + PQ   +  H               ++ T         E++   G + V++EML  L P+  E    E++  L   CR  +QRV+ L+     E L
Sbjct:   13 VGQRIERATDGSLRGEDWSLNMEICDIINETEEGPKDAFRAIKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHILVASQDFVESVLVRTILPKNNPPAIVHDKVLTLIQSWADAFRS-SPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPRRSVYSSNSQSGQNSPAVNSPQQMESILHPVTLPSGRDTSSNVPITPTQEQIKKLRSELEVVNGNVKVMSEMLTELVPSQAETSDLELLQELNRTCRAMQQRVLELIPRVQHEQL 280          
BLAST of FC877810 vs. ExPASy Swiss-Prot
Match: HGS_RAT (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.672e-19
Identity = 42/109 (38.53%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  234 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 560
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+ ++ +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAF 119          
BLAST of FC877810 vs. ExPASy Swiss-Prot
Match: HGS_MOUSE (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.672e-19
Identity = 42/109 (38.53%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  234 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 560
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+ ++ +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAF 119          
BLAST of FC877810 vs. ExPASy Swiss-Prot
Match: HGS_HUMAN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens GN=HGS PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.852e-19
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3
Query:  234 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 560
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+  + +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 119          
BLAST of FC877810 vs. ExPASy Swiss-Prot
Match: HGS_BOVIN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus GN=HGS PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.852e-19
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3
Query:  234 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 560
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+  + +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVSSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 119          
The following BLAST results are available for this feature:
BLAST of FC877810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
TM1L2_HUMAN1.196e-2530.04TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1... [more]
TM1L2_MOUSE3.478e-2529.67TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1... [more]
TM1L2_XENLA8.568e-2429.45TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE... [more]
TOM1_MOUSE4.252e-2329.00Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE... [more]
TOM1_HUMAN4.252e-2329.00Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE... [more]
TOM1_CHICK5.553e-2329.37Target of Myb protein 1 OS=Gallus gallus GN=TOM1 P... [more]
HGS_RAT1.672e-1938.53Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_MOUSE1.672e-1938.53Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_HUMAN2.852e-1938.53Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_BOVIN2.852e-1938.53Hepatocyte growth factor-regulated tyrosine kinase... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA24CC10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA24CC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877810 ID=FC877810; Name=FC877810; organism=Citrus clementina; type=EST; length=969bp
AGAGTGGGAGTTTTAGAGAGAGAAAGTGGGAGAAAAAGAGAGATAATATC
AATACTGTTCGATTTAATTGATCGAGAAAGAGATAAATCTTTTCGTTACC
GGAATATCCGGTGGCATAACGGTAATTAGTTGCGATCTCGGAGCCGGAAT
CGGAGTGATCTTCTTGGAGAGGTGTTTGATTTGATTCGTTTGTTTGGTTG
GGAGAGAGTGAGAGAGCAGAGATGGTGAATTCAATGGTGGATAGAGCCAC
GAGCGACATGTTGATCGGCCCTGATTGGGCCATGAACATCGAGATCTGTG
ACATGCTCAATCACGACCCTGGGCAAGCAAAGGATGTTGTTAAAGGTATT
AAAAAGCGTATTGGAAGTAGGAATTCAAAAGTTCAACTTCTTGCTTTAAC
ACTGTTGGAGACAATTATAAAGAATTGTGGGGATATTGTCCATATGCATG
TTGCAGAGAAAAATGTTCTTCATGAGATGGTGAAAATAGCCAGGAAAAAG
CCCGACACTCACGTCAAAGAGAAGATATTAATTCTAATAGATACTTGGCA
AGAAGCTTTCGGAGGACCTAGGGCAAGATATCCACAGTACTATGCGGCAT
ACCAAGAGTTATTGCGCGCTGGGGCAGTGTTCCCTCAGAGGTCTGAGAGG
TCTGCGCCTGTTTTCACACCACCTCAAACACATCCCTTGACTTCTTATCC
TCAAAATTTTCGAAATCCTGAGCATCAGCAAGAGGCAGCTGAAGCTTCTG
CAGAGTCTGAGTTCCCAACCTTGAGCTTGACAGAAATTCAGAATGCACGT
GGTATTATGGATGTCCTTGCAGAAATGCTGAATGCATTAGATCCAAACAA
CAAAGAGGGCCTTAGGCAGGAGGTTATTGTTGANTTGGTTGATCAGTGCC
GGACATACAAGCAAAGAGTAGTGCACCTTGTTATTTCAACTGCGGATGAG
TCACTGCTATGTCAAGGTT
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