FC877812
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877812 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.517e-14 Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 3 Query: 654 SGFERLLEQLSQIDMNGIGGFEN-PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL 896 +G+E LL+ L++ D G GG PPA+K+AIE + + + SS E+ CAVCK+ +G +++PC H YH DCI+PWL Sbjct: 207 AGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWL 288
BLAST of FC877812 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.371e-11 Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 3 Query: 723 PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLS 899 PPA+K A+EN+P +I S EL+ C VC FE A EMPC H++HS+CILPWLS Sbjct: 52 PPAAKTAVENLPRTVIRGSQAELK--CPVCLLEFEEEETAIEMPCHHLFHSNCILPWLS 108
BLAST of FC877812 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.709e-11 Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 3 Query: 654 SGFERLLEQLSQIDMNGIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL 896 +G + ++ QL + FEN PPA I+ +P+I I +V C VCKE + +G R++PC H++H+DCI+PWL Sbjct: 183 NGLDTIITQL-------LNQFENTGPPPADTDKIQALPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWL 259
BLAST of FC877812 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11 Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 3 Query: 654 SGFERLLEQLSQIDMNGIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL 896 +G + ++ QL + FEN PPA I+ +P+I I +V C VCKE + +G R++PC H++H+DCI+PWL Sbjct: 182 NGLDTIITQL-------LNQFENTGPPPADTEKIQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWL 258
BLAST of FC877812 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11 Identity = 30/84 (35.71%), Postives = 48/84 (57.14%), Query Frame = 3 Query: 654 SGFERLLEQLSQIDMNGIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL 896 +G + ++ QL +G EN PPA K I ++P++ + V++ C VCKE + + E R++PC H +HS CI+PWL Sbjct: 183 TGLDAIVTQL-------LGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWL 259
BLAST of FC877812 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11 Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 3 Query: 585 YYDDGEGSGLRPLPRSMTEFLLGSGFERLLEQLSQIDMNGIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLS 899 Y+D+ + P + T LL L ++ D+ + +++ PPA+K +EN+P +I S EL+ C VC FE A EMPC H++HS CILPWLS Sbjct: 4 YFDEHDCEPSDPEQETRTNMLLELA-RSLFNRMDFEDLGLVVDWDHHLPPPAAKTVVENLPRTVIRGSQAELK--CPVCLLEFEEEETAIEMPCHHLFHSSCILPWLS 108 The following BLAST results are available for this feature:
BLAST of FC877812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877812 ID=FC877812; Name=FC877812; organism=Citrus clementina; type=EST; length=899bpback to top |