FC877812

Overview
NameFC877812
Unique NameFC877812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length899
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7265 contig Ccv1_Contig7265:61..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877812 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.517e-14
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  654 SGFERLLEQLSQIDMNGIGGFEN-PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL 896
            +G+E LL+ L++ D  G GG    PPA+K+AIE + +  + SS  E+   CAVCK+   +G   +++PC H YH DCI+PWL
Sbjct:  207 AGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWL 288          
BLAST of FC877812 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.371e-11
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 3
Query:  723 PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLS 899
            PPA+K A+EN+P  +I  S  EL+  C VC   FE    A EMPC H++HS+CILPWLS
Sbjct:   52 PPAAKTAVENLPRTVIRGSQAELK--CPVCLLEFEEEETAIEMPCHHLFHSNCILPWLS 108          
BLAST of FC877812 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.709e-11
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 3
Query:  654 SGFERLLEQLSQIDMNGIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL 896
            +G + ++ QL       +  FEN   PPA    I+ +P+I I   +V     C VCKE + +G   R++PC H++H+DCI+PWL
Sbjct:  183 NGLDTIITQL-------LNQFENTGPPPADTDKIQALPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWL 259          
BLAST of FC877812 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 3
Query:  654 SGFERLLEQLSQIDMNGIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL 896
            +G + ++ QL       +  FEN   PPA    I+ +P+I I   +V     C VCKE + +G   R++PC H++H+DCI+PWL
Sbjct:  182 NGLDTIITQL-------LNQFENTGPPPADTEKIQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWL 258          
BLAST of FC877812 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 30/84 (35.71%), Postives = 48/84 (57.14%), Query Frame = 3
Query:  654 SGFERLLEQLSQIDMNGIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWL 896
            +G + ++ QL       +G  EN   PPA K  I ++P++ +    V++   C VCKE + +  E R++PC H +HS CI+PWL
Sbjct:  183 TGLDAIVTQL-------LGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWL 259          
BLAST of FC877812 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 3
Query:  585 YYDDGEGSGLRPLPRSMTEFLLGSGFERLLEQLSQIDMNGIGGFEN---PPASKAAIENMPSILIDSSYVELESHCAVCKEAFELGSEAREMPCKHIYHSDCILPWLS 899
            Y+D+ +     P   + T  LL      L  ++   D+  +  +++   PPA+K  +EN+P  +I  S  EL+  C VC   FE    A EMPC H++HS CILPWLS
Sbjct:    4 YFDEHDCEPSDPEQETRTNMLLELA-RSLFNRMDFEDLGLVVDWDHHLPPPAAKTVVENLPRTVIRGSQAELK--CPVCLLEFEEEETAIEMPCHHLFHSSCILPWLS 108          
The following BLAST results are available for this feature:
BLAST of FC877812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CIP8_ARATH5.517e-1443.90E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN181_BOVIN4.371e-1154.24E3 ubiquitin-protein ligase RNF181 OS=Bos taurus G... [more]
R126B_XENLA5.709e-1136.90RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
RN126_XENTR7.457e-1136.90RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN115_HUMAN7.457e-1135.71RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
RN181_HUMAN9.739e-1136.11E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA24CC11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA24CC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877812 ID=FC877812; Name=FC877812; organism=Citrus clementina; type=EST; length=899bp
CCCGAAAAGGATTCCGATTTAAAAAATTTTCTCAGATTCTAAAAATTTTC
CGAGAAAATTTTTAAAGCAAATGAAACTCCTTATGTGGGGCCAAAAAAAT
TGATTTTTTTCCCTAATAATATCGATTCTCCGTGGAGATTTCTCAGATCT
GCATCAAATGTCTTCGATAGTTTCATCATCGTCGTACTGGTGTTACAGAT
GCAGCCGTTTCGTTAGGGTTTTCAGCCGGGACGACGTCGTCTCGTGTCCC
GACTGCGACGGCGGGTTCGTTGAAGAGATCGAGAATACGCCACGTGGCAT
CCACTCAACCGACATCCACCGCGGCCCCGGCCCCGGCCCCGGCCGGATGA
GATTCCCTGCTGCCGCGATGTACATGATTGGAAGCAGTAATAATAGTAAT
AATAATAGTAATAATATTAATCAATAGTAGTAACCGGTCGAATCGAGATC
CGAACAACTCGGCCGGTCCGGTTCTTCGAAGAAGCCGCAGAACTGGCGGA
GACCGGTCTCCGTTCAATCCAGTCATCGTGCTGCGTGGACCAGTCAACGG
GGACGTCGATAATAACGGTAACGGATATGAATTGTACTACGATGATGGTG
AAGGGTCTGGATTAAGACCCTTGCCGAGGAGTATGACCGAGTTTTTGCTC
GGATCAGGATTTGAACGGCTGCTTGAGCAGTTATCGCAGATTGATATGAA
CGGAATCGGTGGATTTGAGAATCCGCCGGCTTCCAAAGCTGCTATTGAGA
ACATGCCTAGCATATTGATAGATTCTAGTTATGTTGAGTTAGAATCTCAT
TGTGCAGTGTGTAAAGAAGCGTTTGAATTAGGATCTGAAGCTAGAGAAAT
GCCCTGTAAGCATATATATCATTCTGATTGTATACTGCCATGGTTGTCG
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