FC877813

Overview
NameFC877813
Unique NameFC877813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877813_ssr731 microsatellite FC877813_ssr731:731..742. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11883 contig Ccv1_Contig11883:16..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877813 vs. ExPASy Swiss-Prot
Match: C78AB_ORYSJ (Cytochrome P450 78A11 OS=Oryza sativa subsp. japonica GN=CYP78A11 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 7.066e-50
Identity = 111/244 (45.49%), Postives = 147/244 (60.25%), Query Frame = 1
Query:   97 PFVFSTAGSLPFIFVSIFCFFLAPGGLAWALYKSRFSTQTRTAIPGPSGLPILGMVLAFTGSLTHRVLAKL---AVSFRAKPLMAFSVGFTRFVISSHPDTAKEILNSSAFADRPVKESAYELLFHRAIGFAPFGEYWRNLRRISGTHLFSPKRMSVLGKFRETVGLKMVKEIRVLMEKNGAVEVRKVLHFGSLNSVMMSVFGRSYEFGEKCNYHDDDGSHELEGLVREGYELLGTFNWSDHFP 819
            P + + A  L F   ++  +  +PGG AWA  + R      T I GP GLP+ G + A +  L HR L  +   A + RA+ LMAFSVG T  V+SS P TA+E+L   +FADRP+K SA ELLF RAIGFAP GEYWR LRRI+ THLFSP+R++     R+     M+  +       GAV +R  L   +LN++M SVFGR Y+         D+ + +L+ +VREG+ELLG FNWSDH P
Sbjct:   34 PALLAGAVLLAFATAAVLAWAASPGGPAWAHGRGRLGA---TPIEGPRGLPVFGSIFALSRGLPHRALDAMSRDAAAPRARELMAFSVGETPAVVSSCPATAREVLAHPSFADRPLKRSARELLFARAIGFAPSGEYWRLLRRIASTHLFSPRRVAAHEPGRQADATAMLSAMAAEQSATGAVVLRPHLQAAALNNIMGSVFGRRYDVSSSSGAAADE-AEQLKSMVREGFELLGAFNWSDHLP 273          
BLAST of FC877813 vs. ExPASy Swiss-Prot
Match: C78A3_SOYBN (Cytochrome P450 78A3 OS=Glycine max GN=CYP78A3 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.969e-48
Identity = 105/225 (46.67%), Postives = 146/225 (64.89%), Query Frame = 1
Query:  148 FCFFLAPGGLAWALYKSRFSTQTRTAIPGPSGLPILGMVLAFTGSLTHRVLAKLAVSFRAKPLMAFSVGFTRFVISSHPDTAKEILNSSAFADRPVKESAYELLFHRAIGFAPFGEYWRNLRRISGTHLFSPKRMSVLGKFRETVGLKMVKEIRVLMEKNGAVEVRKVLHFGSLNSVMMSVFGRSYEFGEKCNYHD-DDGSHELEGLVREGYELLGTFNWSDHFP 819
            F ++  PGG AW  Y +   +   + IPGP G P++G +   T SL H  +A  A + RAK LMAFS+G TR +++ HPD AKEILNSS FADRPVKESAY L+F+RAIGFA +G YWR+LRRI+  HLF P+++      R  +  +MV  +    +++ ++ VR+VL   SL+++M SVFG+ Y+       HD + G  +L  LV +GY+LLG FNW+DH P
Sbjct:   39 FYYWSHPGGPAWGKYYTY--SPPLSIIPGPKGFPLIGSMGLMT-SLAHHRIAAAAATCRAKRLMAFSLGDTRVIVTCHPDVAKEILNSSVFADRPVKESAYSLMFNRAIGFASYGVYWRSLRRIASNHLFCPRQIKASELQRSQIAAQMVHILN--NKRHRSLRVRQVLKKASLSNMMCSVFGQEYKL------HDPNSGMEDLGILVDQGYDLLGLFNWADHLP 252          
BLAST of FC877813 vs. ExPASy Swiss-Prot
Match: C78A4_PINRA (Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.629e-46
Identity = 100/226 (44.25%), Postives = 142/226 (62.83%), Query Frame = 1
Query:  142 SIFCFFLAPGGLAWALYKSRFSTQTRTAIPGPSGLPILGMVLAFTGSLTHRVLAKLAVSFRAKPLMAFSVGFTRFVISSHPDTAKEILNSSAFADRPVKESAYELLFHRAIGFAPFGEYWRNLRRISGTHLFSPKRMSVLGKFRETVGLKMVKEIRVLMEKNGAVEVRKVLHFGSLNSVMMSVFGRSYEFGEKCNYHDDDGSHELEGLVREGYELLGTFNWSDHFP 819
            ++   +L+PGG AWA    R     R AIPGP G PI+G ++  +  L HR L  LA    AK LM+FS+G T  VI+S P+ A+E+L S  FA+RP+K+SA +LLF RAIGFAP G YWR LRRI+  HLF+P+R++     R+   + M+ +I+      G V VR+ L   +LN++M SVFGR ++       H+++   +L  +V EG++LLG FNW+DH P
Sbjct:   55 AVLVSWLSPGGCAWAGRHKR----GRVAIPGPKGWPIIGSLMDMSVGLPHRKLESLARLHGAKQLMSFSLGCTPAVITSDPEVARELLTSPHFANRPLKQSAQQLLFGRAIGFAPNGGYWRLLRRIASAHLFAPRRIAAHEAGRQADVVAMLDDIQKEYHSKGVVRVRRHLQGAALNNIMGSVFGRRFDMS-----HENEEVKKLREMVDEGFQLLGAFNWADHLP 271          
BLAST of FC877813 vs. ExPASy Swiss-Prot
Match: C78A1_MAIZE (Cytochrome P450 78A1 OS=Zea mays GN=CYP78A1 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.637e-38
Identity = 85/166 (51.20%), Postives = 109/166 (65.66%), Query Frame = 1
Query:  322 RAKPLMAFSVGFTRFVISSHPDTAKEILNSSAFADRPVKESAYELLFHRAIGFAPFGEYWRNLRRISGTHLFSPKRMSVLGKFRETVGLKMVKEIRVLMEKNGAVEVRKVLHFGSLNSVMMSVFGRSYEFGEKCNYHDDDGSHELEGLVREGYELLGTFNWSDHFP 819
            RAK LMAFSVG T  V+SS P TA+E+L   +FADRPVK SA EL+F RAIGFAP GEYWR LRR++ THLFSP+R++     R+     M++ I      +GAV +R  L   +LN++M SVFG  Y+        +   +  L+ +VREG+ELLG FNWSDH P
Sbjct:  106 RAKELMAFSVGDTPAVVSSCPATAREVLAHPSFADRPVKRSARELMFARAIGFAPNGEYWRRLRRVASTHLFSPRRVASHEPGRQGDAEAMLRSIAAEQSASGAVALRPHLQAAALNNIMGSVFGTRYDVTSGAGAAE---AEHLKSMVREGFELLGAFNWSDHLP 268          
BLAST of FC877813 vs. ExPASy Swiss-Prot
Match: C71BZ_ARATH (Cytochrome P450 71B38 OS=Arabidopsis thaliana GN=CYP71B38 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.589e-17
Identity = 70/232 (30.17%), Postives = 121/232 (52.16%), Query Frame = 1
Query:  139 VSIFCFFLAPGGLAWALYKSRFSTQTRTAIPGPSGLPILGMVLAFTGSLTHRVLAKLAVSFRAKPLMAFSVGFTRFVISSHPDTAKEILNSSAFADRPVKESAYELLF---HRAIGFAPFGEYWRNLRRISGTHLFSPKRMSVLGKFRETVGLKMVKEIRVLME--KNGAVEVRKVLHFGSLNSVMMSVFGRSYEFGEKCNYHDDDGSHELEGLVREGYELLGTFNWSDHFP 819
            +SIF  FL    L+  L+K    ++ +   PGP GLPI+G  L   G L ++   K++  +   P++   +G    ++ S  + A+E+L +         ++A   LF    + IGFAPFG+ WR +R+I+   LFS K++      RE     +VK+I   ++  +N +V++RKVL   + + +    FG+++    +C++ D     ++E LV E    LGTF ++D FP
Sbjct:    1 MSIFLCFLLLLPLSLILFKKLLPSKGKLP-PGPIGLPIIGN-LHQLGKLLYKSFHKISQEYG--PVVLLRLGVVPVIVVSSKEGAEEVLKTHDLETCTRPKTAATGLFTYNFKDIGFAPFGDDWREMRKITTLELFSVKKLKSFRYIREEESELLVKKISKSVDETQNSSVDLRKVLFSFTASIICRLAFGQNF---HQCDFVD---MEKVEELVLESEANLGTFAFADFFP 222          
BLAST of FC877813 vs. ExPASy Swiss-Prot
Match: C71DB_LOTJA (Cytochrome P450 71D11 (Fragment) OS=Lotus japonicus GN=CYP71D11 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.710e-17
Identity = 67/201 (33.33%), Postives = 108/201 (53.73%), Query Frame = 1
Query:  229 PGPSGLPILGMVLAFTGSLTHRVLAKLAVSFRAKPLMAFSVGFTRFVISSHPDTAKEILNSS--AFADRPVKESAYELLFHRA--IGFAPFGEYWRNLRRISGTHLFSPKRMSVLGKFRETVGLKMVKEIRVLMEKNGAVEVRKVLHFGSLNSVMMSVFGRSYEFGEKCNYHDDDGSHELEGLVREGYELLGTFNWSDHFP 819
            PGP  LPI+G +    GS  HR L  LA  +   PLM   +G   F+I S  + AKE++ +    FA RP +    +++F+ +  IGF+P+G+YWR +R+I    L S KR+  L   RE       +E++ L+++  + E   V    +++S++ ++  RS  FG++  Y + +   E    VRE  +L G FN +D FP
Sbjct:   21 PGPWKLPIIGSIPHLVGSPPHRKLRDLAKKYG--PLMHLQLGEVIFIIVSSAEYAKEVMKTHDVTFASRP-RSLFTDIVFYGSTDIGFSPYGDYWRQVRKICNVELLSMKRVQSLWPIRE-------EEVKNLIQRIASEEGSVVNLSQAIDSLIFTITSRS-AFGKR--YMEQE---EFISCVREVMKLAGGFNIADLFP 205          
BLAST of FC877813 vs. ExPASy Swiss-Prot
Match: C71B2_ARATH (Cytochrome P450 71B2 OS=Arabidopsis thaliana GN=CYP71B2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 6.037e-17
Identity = 73/232 (31.47%), Postives = 109/232 (46.98%), Query Frame = 1
Query:  145 IFCFFLAPGGLAWALYKSRFSTQTRTAI----PGPSGLPILGMVLAFTGSLTHRVLAKLAVSFRAKPLMAFSVGFTRFVISSHPDTAKEIL--NSSAFADRPVKESAYELLF-HRAIGFAPFGEYWRNLRRISGTHLFSPKRMSVLGKFRETVGLKMVKEIRVLMEKNGAVEVRKVLHFGSLNSVMMSVFGRSYEFGEKCNYHDDDGSHELEGLVREGYELLGTFNWSDHFP 819
            + CFFL        +  S F  Q +T+     P PS LPI+G +    G L HR   KL++ +   PL+   +G    V+ S  + A+ +L  N      RP    + +L +  + I FAP+GEYWR +R+++   LFS K++      RE     +VK++     K   V++ K   F SL + ++        F E     D D    +E LV E  E LGTF +SD FP
Sbjct:    4 LLCFFLVS---LLTIVSSIFLKQNKTSKFNLPPSPSSLPIIGNLHHLAG-LPHRCFHKLSIKYG--PLVFLRLGSVPVVVISSSEAAEAVLKTNDLECCSRPKTVGSGKLSYGFKDITFAPYGEYWREVRKLAVIELFSSKKVQSFRYIREEEVDFVVKKVSESALKQSPVDLSKT--FFSLTASIICRVALGQNFNESGFVIDQD---RIEELVTESAEALGTFTFSDFFP 224          
BLAST of FC877813 vs. ExPASy Swiss-Prot
Match: C71BM_ARATH (Cytochrome P450 71B22 OS=Arabidopsis thaliana GN=CYP71B22 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.942e-15
Identity = 67/231 (29.00%), Postives = 115/231 (49.78%), Query Frame = 1
Query:  139 VSIFCFFLAPGGLAWALYKSRFSTQTRTAIPGPSGLPILGMVLAFTGSLTHRVLAKLAVSFRAKPLMAFSVGFTRFVISSHPDTAKEILNSSAF--ADRPVKESAYELLFH--RAIGFAPFGEYWRNLRRISGTHLFSPKRMSVLGKFRETVGLKMVKEIRVLMEKNGAVEVRKVLHFGSLNSVMMSVFGRSYEFGEKCNYHDDDGSHELEGLVREGYELLGTFNWSDHFP 819
            +S++   L P    + ++  + S       PGP GLPI+G +     SL HR   KL+ ++   P+M    G    V+ S  + A+E+L +       RP K +A +L  +  + IGFA +G+ WR +R+++   LFS K++      RE     +V ++    E    V++RK L   + + V    FG+++    +C++ D D   ++E LV E    LG+F ++D FP
Sbjct:    3 ISLYFLLLLP---LFLIFFKKLSPSKGKLPPGPLGLPIIGNLHQLGKSL-HRSFHKLSQNYG--PVMFLHFGVVPVVVVSTREAAEEVLKTHDLETCTRP-KLTATKLFSYNYKDIGFAQYGDDWREMRKLAMLELFSSKKLKAFRYIREEESEVLVNKLSKSAETRTMVDLRKALFSYTASIVCRLAFGQNF---HECDFVDMD---KVEDLVLESETNLGSFAFTDFFP 220          
BLAST of FC877813 vs. ExPASy Swiss-Prot
Match: C71BL_ARATH (Cytochrome P450 71B21 OS=Arabidopsis thaliana GN=CYP71B21 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.942e-15
Identity = 72/231 (31.17%), Postives = 113/231 (48.92%), Query Frame = 1
Query:  139 VSIFCFFLAPGGLAWALYKSRFSTQTRTAIPGPSGLPILGMVLAFTGSLTHRVLAKLAVSFRAKPLMAFSVGFTRFVISSHPDTAKEILNSSAF--ADRPVKESAYELLFH--RAIGFAPFGEYWRNLRRISGTHLFSPKRMSVLGKFRETVGLKMVKEIRVLMEKNGAVEVRKVLHFGSLNSVMMSVFGRSYEFGEKCNYHDDDGSHELEGLVREGYELLGTFNWSDHFP 819
            +SIF  FL    L    YK    ++ +   PGP  LPI+G +     SL HR   KL+  +   P+M    G    V+ S  + A+E+L +       RP K SA  L  +  + IGFA +GE WR +R+++   LFS K++      RE     +VK++    +    V++RK L   + + V    FG+++    +C++ D D   ++E LV E    LG+F + D FP
Sbjct:    1 MSIFLCFLLLLPLFLVFYKRLLPSKGKLP-PGPISLPIIGNLHQLGKSL-HRSFYKLSQEYG--PVMFLRFGVVPVVVFSTKEAAEEVLKTHDLETCTRP-KLSATGLFTYNFKDIGFAQYGEDWREMRKLAMLELFSSKKLKAFRYIREEESELLVKKVTESAQTQTLVDLRKALFSYTASIVCRLAFGQNF---HECDFVDMD---KVEELVLESETNLGSFAFIDFFP 220          
BLAST of FC877813 vs. ExPASy Swiss-Prot
Match: C71B8_ARATH (Cytochrome P450 71B8 OS=Arabidopsis thaliana GN=CYP71B8 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.942e-15
Identity = 68/225 (30.22%), Postives = 106/225 (47.11%), Query Frame = 1
Query:  154 FFLAPGGLAWALYKSRFSTQTRTAIPGPSGLPILGMVLAFTGSLTHRVLAKLAVSFRAKPLMAFSVGFTRFVISSHPDTAKEILNSSAFADRPVKESAYELLFHRA---IGFAPFGEYWRNLRRISGTHLFSPKRMSVLGKFRETVGLKMVKEIRVLMEKNGAVEVRKVLHFGSLNSVMMSVFGRSYEFGEKCNYHDDDGSHELEGLVREGYELLGTFNWSDHFP 819
            FFL P  L   L+K    ++ +   PGP+GLPI+G  L   G L H    KL  S    P+M    G    V+ S  + AK++L S         +     LF R    I FA +GE WR ++++ G  LF+PK+       RE  G  +VK++    +    V++RK     +   +    FG+++    +C++ D D    LE LV+E    + +F ++D FP
Sbjct:   10 FFLFP--LLLTLFKKLLPSKWKLP-PGPTGLPIIGN-LHQLGRLLHSSFHKL--SLEHGPVMLLRFGVVPMVVISSKEAAKQVLKSRDLETCSRPKLVANGLFTRNFKDIAFAQYGEDWREMKKLVGLELFNPKKHKFFRYIREEEGDLLVKKLSKSSQTQTLVDLRKAFFSFTAGIIFRVSFGQNF---RECDFIDMD---RLEELVQESETNVFSFAFTDFFP 222          
The following BLAST results are available for this feature:
BLAST of FC877813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
C78AB_ORYSJ7.066e-5045.49Cytochrome P450 78A11 OS=Oryza sativa subsp. japon... [more]
C78A3_SOYBN2.969e-4846.67Cytochrome P450 78A3 OS=Glycine max GN=CYP78A3 PE=... [more]
C78A4_PINRA3.629e-4644.25Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 P... [more]
C78A1_MAIZE3.637e-3851.20Cytochrome P450 78A1 OS=Zea mays GN=CYP78A1 PE=2 S... [more]
C71BZ_ARATH1.589e-1730.17Cytochrome P450 71B38 OS=Arabidopsis thaliana GN=C... [more]
C71DB_LOTJA2.710e-1733.33Cytochrome P450 71D11 (Fragment) OS=Lotus japonicu... [more]
C71B2_ARATH6.037e-1731.47Cytochrome P450 71B2 OS=Arabidopsis thaliana GN=CY... [more]
C71BM_ARATH1.942e-1529.00Cytochrome P450 71B22 OS=Arabidopsis thaliana GN=C... [more]
C71BL_ARATH1.942e-1531.17Cytochrome P450 71B21 OS=Arabidopsis thaliana GN=C... [more]
C71B8_ARATH1.942e-1530.22Cytochrome P450 71B8 OS=Arabidopsis thaliana GN=CY... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA12AG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877813 ID=FC877813; Name=FC877813; organism=Citrus clementina; type=EST; length=819bp
CAATATCATAAATACCCCTCAGAAAATCACTTATTTGTCTTTAAAAATCA
TCTTTTTTAATCTTAAGCAAACATGACTGCTGATCAGTATTTTCTTCCCT
TTGTTTTTTCAACAGCTGGTTCCTTACCATTTATCTTTGTCTCAATTTTC
TGTTTCTTCTTGGCACCCGGTGGCTTGGCTTGGGCTCTTTACAAAAGCCG
GTTCAGTACCCAAACCCGAACGGCCATTCCCGGTCCCTCCGGTCTCCCCA
TTCTTGGCATGGTTCTAGCTTTCACCGGCTCTCTGACTCATAGAGTCCTT
GCCAAGCTGGCTGTGTCTTTCCGGGCCAAGCCATTGATGGCTTTCTCCGT
TGGGTTCACTCGTTTCGTCATATCAAGCCACCCCGATACAGCCAAAGAGA
TTCTTAACAGCTCAGCTTTCGCTGATCGCCCCGTTAAGGAATCGGCTTAT
GAACTTTTGTTTCATAGGGCAATTGGGTTTGCTCCCTTTGGCGAGTACTG
GAGGAACCTGAGGAGAATCTCAGGTACGCATTTGTTTAGTCCCAAGAGAA
TGAGTGTTCTTGGGAAATTTCGCGAGACTGTTGGGCTAAAAATGGTGAAA
GAAATTAGGGTTTTGATGGAGAAAAACGGAGCCGTTGAAGTGAGAAAAGT
GTTGCATTTTGGGTCACTGAACAGTGTGATGATGAGTGTGTTTGGAAGGA
GTTATGAGTTTGGTGAAAAGTGCAATTATCATGATGATGATGGGAGTCAT
GAACTTGAGGGTTTGGTGAGGGAAGGGTATGAGTTGCTTGGGACCTTTAA
CTGGAGTGACCATTTTCCT
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