FC877815

Overview
NameFC877815
Unique NameFC877815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length909
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6011 contig Ccv1_Contig6011:1..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877815 vs. ExPASy Swiss-Prot
Match: NEP2_SCHPO (NEDD8-specific protease 2 OS=Schizosaccharomyces pombe GN=nep2 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.204e-24
Identity = 84/254 (33.07%), Postives = 123/254 (48.43%), Query Frame = 2
Query:  152 PLTKAGPSSGRNSPG----HKGFRHPFGGRVSKHFGDMLSP-EDAYLSYHDVRLTREDVQCIKDD-WLTDNVIAFWQEYLEHEKLKDYPRAN---IVLLRPSMAFLLLNTKDPLSLKSALPN-FEKTTHIFLPINDCRSVDIAEGGSHWSLLLVSVIDGVAFHYDSLSPSNVQEAKLVAHRISALLGKPLKFINLEDSPQQDNSSDCGVYVCXXXXXXXXXXXXXAHAQDKISMSMRGKEVDAYNGRKEMLRVI 883
            P T +  S+G ++       KGF     G  S       SP    +L Y +V L + DV   +   W+ D  I F+ E +  + L   P+     I LLRP+M F L    +PL ++SALP      + IFLPIND     I E GSHWSLL+VSV  G+ ++YDS+S  N  +  L    +  LL K  +  +++ +PQQ N  DCG++VC              +   K+ M++    VD+   RK ++ VI
Sbjct:   25 PSTGSSNSNGSDTASPKKKKKGFFRSLFGSSSSGSKSCGSPFTRIWLEYFEVSLRKNDVDHFRPGYWILDTNIDFFYEIMLRQVLLKRPKEESQQIYLLRPAMVFFLAQAPNPLEIESALPPAMFDASFIFLPINDTNECGI-ESGSHWSLLVVSVEKGLGWYYDSMSNGNTNDCNLAIKNLGILLKKEFRVRHMK-TPQQINDCDCGLHVCENTRILMYRLLQKPYV-PKVDMNLDHSVVDSVRLRKALMEVI 275          
BLAST of FC877815 vs. ExPASy Swiss-Prot
Match: NEP1_SCHPO (NEDD8-specific protease 1 OS=Schizosaccharomyces pombe GN=nep1 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.126e-21
Identity = 67/173 (38.73%), Postives = 89/173 (51.45%), Query Frame = 2
Query:  254 LSPEDAYLSYHDVRLTREDVQCIKD-DWLTDNVIAFWQEYLEHEKLKDYP-RAN-IVLLRPSMAFLLLNTK-DPLSLKSALPN-FEKTTHIFLPINDCRSVDIAEGGSHWSLLLVSVIDGVAFHYDSLSPSNVQEAKLVAHRISALLGKPLKFINLEDSPQQDNSSDCGVYVC 757
            +S     L   DV   +EDV  +K  +W TD  I +  E +EH     YP +AN I+LLRPS+ FLL      P  LK ALP       ++F+PIND        GGSHWSL++ S+ DG  ++YDSLS    ++ +    R+S L  K    I      QQ N  DCG +VC
Sbjct:    1 MSSSPTVLELFDVCFKQEDVDSLKKPNWFTDVSIDYVDELIEHLWFPSYPNQANEILLLRPSLVFLLAEAAISPEELKVALPKKLMNCKYLFMPINDLDKHAAGSGGSHWSLMVASIPDGQCYYYDSLSNGKTKDCRSALARVSDLFKKKFT-IECMPVQQQRNGYDCGAHVC 172          
BLAST of FC877815 vs. ExPASy Swiss-Prot
Match: SENP8_HUMAN (Sentrin-specific protease 8 OS=Homo sapiens GN=SENP8 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.022e-15
Identity = 59/166 (35.54%), Postives = 84/166 (50.60%), Query Frame = 2
Query:  275 LSYHDVRLTREDVQCIKD-DWLTDNVIAFWQEYLEHEKLKDYPRANIVLLRPSMAFLLLNTKDPLSLKSALPNFEKTTH--IFLPINDCRSVDIAEGGSHWSLLLVSVIDGVAFHYDSLSPSNVQEAKLVAHRISALLGK---PLKFINLEDSPQQDNSSDCGVYV 754
            LSY D  L + DV  +    WL D++I F  EY  + +  D    ++  + P +   +  T +P  +   L   +      +FL IND  + + A GG+HWSLL+        FHYDS S SN   AK VA ++ A LG+    L F+  E +P Q NS DCG+YV
Sbjct:    6 LSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSD-HVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAIND--NSNQAAGGTHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKLEAFLGRKGDKLAFVE-EKAPAQQNSYDCGMYV 167          
BLAST of FC877815 vs. ExPASy Swiss-Prot
Match: SENP8_MOUSE (Sentrin-specific protease 8 OS=Mus musculus GN=Senp8 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.973e-15
Identity = 59/166 (35.54%), Postives = 83/166 (50.00%), Query Frame = 2
Query:  275 LSYHDVRLTREDVQCIKD-DWLTDNVIAFWQEYLEHEKLKDYPRANIVLLRPSMAFLLLNTKDPLSLKSALPNFEKTTH--IFLPINDCRSVDIAEGGSHWSLLLVSVIDGVAFHYDSLSPSNVQEAKLVAHRISALLGK---PLKFINLEDSPQQDNSSDCGVYV 754
            LSY D  L + DV  +    WL D++I F  EY  + +  D    ++  + P +   +  T  P  +   L   +      +FL IND  + + A GG+HWSLL+        FHYDS S SN   AK VA ++ A LG     L F+  E +P Q+NS DCG+YV
Sbjct:    6 LSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDCSD-HVCFISPEVTQFIKCTSSPAEIAMFLEPLDLPHKRVVFLAIND--NSNQAAGGTHWSLLVYLQDKNSFFHYDSHSRSNSIHAKQVAEKLKAFLGSKGDKLVFVE-EKAPAQENSYDCGMYV 167          
BLAST of FC877815 vs. ExPASy Swiss-Prot
Match: SENP8_DICDI (Probable sentrin-specific protease 8 OS=Dictyostelium discoideum GN=senp8 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.973e-15
Identity = 53/172 (30.81%), Postives = 90/172 (52.33%), Query Frame = 2
Query:  275 LSYHDVRLTREDVQCIKDD-WLTDNVIAFWQEYLEH--EKLKDYPRANIVLLRPSMAFL--LLNTKDPLSLKSALPNFEKTTH-IFLPINDCRSVDIAEGGSHWSLLLVSVIDGVAFHYDSLSPSNVQEAKLVAHRISALLGKPLKFINLED------SPQQDNSSDCGVYV 754
            +SY+D  + + D+  +K + WL D++I+F+ E+L+   E  K+     ++LL PS+ F    + ++  + L    P   KT   IF P+ + R  ++  GG+HWSLL+         +YDS++  N  +A  +  +   LL  P    NL++      +PQQ N  DCG+YV
Sbjct:    7 VSYNDSAIYQSDINILKSNQWLNDSIISFYLEWLKDGGEDNKNKIPNQVLLLSPSVVFCCSFVESEQEIQLMFEQPLSLKTKEVIFFPLTNNRDPNVIGGGTHWSLLIFIKSLNKFIYYDSINSFNSSDAIFIISKFKFLLSSPPPKTNLKEFLINQKTPQQQNGYDCGLYV 178          
BLAST of FC877815 vs. ExPASy Swiss-Prot
Match: SENP8_RAT (Sentrin-specific protease 8 OS=Rattus norvegicus GN=Senp8 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.624e-15
Identity = 59/166 (35.54%), Postives = 82/166 (49.40%), Query Frame = 2
Query:  275 LSYHDVRLTREDVQCIKD-DWLTDNVIAFWQEYLEHEKLKDYPRANIVLLRPSMAFLLLNTKDPLSLKSALPNFEKTTH--IFLPINDCRSVDIAEGGSHWSLLLVSVIDGVAFHYDSLSPSNVQEAKLVAHRISALLGK---PLKFINLEDSPQQDNSSDCGVYV 754
            LSY D  L + DV  +   +WL D++I F  EY    +  D    ++  + P +   +  T  P  +   L   +      +FL IND  + + A GG+HWSLL+        FHYDS S SN   AK VA ++ A LG     L F+  E +P Q NS DCG+YV
Sbjct:    6 LSYMDSLLRQSDVSLLDPPNWLNDHIIGFAFEYFASSQFHDCSD-HVCFISPEVTQFIKCTSSPAEIAMFLEPLDLPHKRVVFLAIND--NSNQAAGGTHWSLLVYLQDKNSFFHYDSHSRSNSIHAKQVAEKLKAFLGSKGDKLVFVE-EKAPAQQNSYDCGMYV 167          
The following BLAST results are available for this feature:
BLAST of FC877815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NEP2_SCHPO1.204e-2433.07NEDD8-specific protease 2 OS=Schizosaccharomyces p... [more]
NEP1_SCHPO2.126e-2138.73NEDD8-specific protease 1 OS=Schizosaccharomyces p... [more]
SENP8_HUMAN1.022e-1535.54Sentrin-specific protease 8 OS=Homo sapiens GN=SEN... [more]
SENP8_MOUSE2.973e-1535.54Sentrin-specific protease 8 OS=Mus musculus GN=Sen... [more]
SENP8_DICDI2.973e-1530.81Probable sentrin-specific protease 8 OS=Dictyostel... [more]
SENP8_RAT6.624e-1535.54Sentrin-specific protease 8 OS=Rattus norvegicus G... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA58BG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877815 ID=FC877815; Name=FC877815; organism=Citrus clementina; type=EST; length=909bp
CGGATCCCTGCAACATATCTCTCTATACGCGCCGCGATAACACCGCCTAC
ACAGAACAAACATTCCTTGCGTGCCGTTCCACCGCACCTAGCCGACTAAA
AAACCCATACCTGCTGTCACCCAGCCAACCACTTTCAACCTCTCTCACAT
GCCGCTTACCAAGGCCGGTCCTTCTTCTGGCCGCAACTCTCCTGGTCACA
AAGGCTTCCGCCATCCCTTCGGCGGTCGAGTGAGCAAACACTTTGGCGAC
ATGCTGTCTCCCGAAGACGCCTACCTCTCATACCACGATGTCCGCCTGAC
TCGTGAAGATGTCCAGTGCATCAAGGACGACTGGCTCACAGACAACGTGA
TCGCCTTCTGGCAGGAATACCTCGAGCATGAAAAGCTAAAGGACTACCCT
CGCGCAAATATTGTGCTCCTCCGCCCATCCATGGCCTTCCTTCTTCTCAA
CACTAAGGATCCGCTCAGCCTGAAATCTGCGCTGCCAAACTTCGAGAAAA
CCACGCACATCTTCCTGCCGATCAACGACTGCCGCAGCGTCGACATCGCA
GAGGGTGGCTCACATTGGAGTCTGCTGCTAGTCTCAGTAATCGACGGTGT
CGCCTTCCACTACGACTCCCTCTCACCCTCCAACGTCCAGGAAGCAAAGC
TCGTCGCCCACCGCATCAGCGCCCTCCTCGGCAAACCGCTCAAATTCATC
AACCTCGAGGACTCGCCGCAGCAGGACAACAGCTCCGACTGTGGCGTCTA
CGTCTGCCTGCTCATGCAGCACTTGCTCATGTCACGGCTGCTGCGAGCCC
ACGCGCAAGATAAGATCAGCATGAGCATGCGCGGAAAAGAGGTCGATGCG
TACAACGGACGGAAGGAAATGCTGCGTGTCATCGAGACCAGGCGCAAAGA
GGGCGAGCG
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