FC877818

Overview
NameFC877818
Unique NameFC877818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877818_ssr781 microsatellite FC877818_ssr781:781..801. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6012 contig Ccv1_Contig6012:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C84A1_ARATH (Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CYP84A1 PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 8.809e-89
Identity = 157/244 (64.34%), Postives = 196/244 (80.33%), Query Frame = 2
Query:  161 NMAMMDQLTHRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVREEVDSTLQTVMNTTGSKVNIGELVFALTRNITYRAAFGSFSHDGQDEFVKILQEFSKLFGAFNIADFFPWMGWINARGFYKRMARARESLDGFIDSIIDEHMXXXXXXNVRDEEGKINYNDGEAEAEADTDMVDELMAF 892
            NM MMDQLTHRGLA+LAKKYGGL HL+MG +H+ AVS+P++A++VLQ QD VF+NRPA +AI+YLTYDRADMAFA+YGPFWRQMRK+CV+K+FSR+R ESWASVR+EVD  +++V    G  +N+GE +FALTRNITYRAAFGS    GQDEF++ILQEFSKLFGAFN+ADF P+ GWI+ +G  KR+ +AR  LDGFID IIDEHM        + +E +   +DG+     DTDMVD+L+AF
Sbjct:   52 NMLMMDQLTHRGLANLAKKYGGLCHLRMGFLHMYAVSSPEVARQVLQVQDSVFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKVCVMKVFSRKRAESWASVRDEVDKMVRSVSCNVGKPINVGEQIFALTRNITYRAAFGSACEKGQDEFIRILQEFSKLFGAFNVADFIPYFGWIDPQGINKRLVKARNDLDGFIDDIIDEHM--------KKKENQNAVDDGDV---VDTDMVDDLLAF 284          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71D6_SOLCH (Cytochrome P450 71D6 OS=Solanum chacoense GN=CYP71D6 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.177e-38
Identity = 82/201 (40.80%), Postives = 130/201 (64.68%), Query Frame = 2
Query:  188 HRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVR-EEVDSTLQTVM--NTTGSKVNIGELVFALTRNITYRAAFGSFSHDGQDEFVKILQEFSKLFGAFNIADFFPWMGWINARGFYKR-MARARESLDGFIDSIIDEH 778
            HR L DLAKKYG L+HLQ+G +  V V++PDMAKEVL+  D+ FA+RP  +A+  + YDR D+AF+ YG +W+QMRKICV ++ S +   S++S+R +EV   + ++   +++G  VN  E V   T ++T R+AFG    + QD F+K+++E  +L   F++AD FP   +++  G  KR +      +D  ++ +I+EH
Sbjct:   53 HRVLRDLAKKYGPLMHLQLGEVSAVVVTSPDMAKEVLKTHDIAFASRPKLLAMDIICYDRCDIAFSPYGEYWKQMRKICVTEVLSAKSVRSFSSIRCDEVVRLIDSIQSSSSSGELVNFKERVIWFTSSMTCRSAFGQLPKE-QDMFIKLIREVIRLAEGFDVADIFPSYKFLHVFGRAKRKLLNVHRKVDAIVEDVINEH 252          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71DB_LOTJA (Cytochrome P450 71D11 (Fragment) OS=Lotus japonicus GN=CYP71D11 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.577e-37
Identity = 86/237 (36.29%), Postives = 137/237 (57.81%), Query Frame = 2
Query:  188 HRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREES-WASVREEVDSTLQTVMNTTGSKVNIGELVFALTRNITYRAAFGSFSHDGQDEFVKILQEFSKLFGAFNIADFFPWMGWI-NARGFYKRMARARESLDGFIDSIIDEHMXXXXXXNVRDEEGKINYNDGEAEAEADTDMVDELMAF 892
            HR L DLAKKYG L+HLQ+G +  + VS+ + AKEV++  D+ FA+RP ++    + Y   D+ F+ YG +WRQ+RKIC ++L S +R +S W    EEV + +Q + +  GS VN+ + + +L   IT R+AFG   +  Q+EF+  ++E  KL G FNIAD FP   W+ N      +     + +D  +++IID+H       N R +EG++           + D++D L+ +
Sbjct:   41 HRKLRDLAKKYGPLMHLQLGEVIFIIVSSAEYAKEVMKTHDVTFASRPRSLFTDIVFYGSTDIGFSPYGDYWRQVRKICNVELLSMKRVQSLWPIREEEVKNLIQRIASEEGSVVNLSQAIDSLIFTITSRSAFGK-RYMEQEEFISCVREVMKLAGGFNIADLFPSAKWLENLTRMRSKFEYLHQKMDRILETIIDDH-----KANSRTKEGQVE--------GGEEDLIDVLLKY 263          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71A1_PERAE (Cytochrome P450 71A1 OS=Persea americana GN=CYP71A1 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.022e-36
Identity = 89/250 (35.60%), Postives = 139/250 (55.60%), Query Frame = 2
Query:  161 NMAMMDQLTHRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVREEVDSTLQTVMN---TTGSKVNIGELVFALTRNITYRAAFGSFSHDGQDE----FVKILQEFSKLFGAFNIADFFPWMGWINA-RGFYKRMARARESLDGFIDSIIDEHMXXXXXXNVRDEEGKINYNDGEAEAEADTDMVDELM 886
            N+  +  L HR L  LA + G L+ L +G I  + VST ++A+E+L+  DL+FA+RP+  A   + YD  D+AF+ YG +WRQ+RKICV++L S +R  S+ S+REE    +   ++   +TG  VN+ EL+  L+     R AFG   ++G++E    F  +  E + L GAF + D+FP   W++   G   R+ R    LD F+D +ID+H+             K N +DG  +     D+VD L+
Sbjct:   43 NLHQLGNLPHRSLRSLANELGPLILLHLGHIPTLIVSTAEIAEEILKTHDLIFASRPSTTAARRIFYDCTDVAFSPYGEYWRQVRKICVLELLSIKRVNSYRSIREEEVGLMMERISQSCSTGEAVNLSELLLLLSSGTITRVAFGK-KYEGEEERKNKFADLATELTTLMGAFFVGDYFPSFAWVDVLTGMDARLKRNHGELDAFVDHVIDDHLL----------SRKANGSDGVEQ----KDLVDVLL 277          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71D7_SOLCH (Cytochrome P450 71D7 OS=Solanum chacoense GN=CYP71D7 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.072e-36
Identity = 78/203 (38.42%), Postives = 130/203 (64.04%), Query Frame = 2
Query:  182 LTHRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVR-EEVDSTLQTVMN--TTGSKVNIGELVFALTRNITYRAAFGSFSHDGQDEFVKILQEFSKLFGAFNIADFFPWMGWINARGFYK-RMARARESLDGFIDSIIDEH 778
            L HR L DLA+KYG L+HLQ+G +  V V++P+MAK+VL+  D+ FA+RP  +A+  + Y+R D+AF+ YG +WRQMRKIC++++ S +   S++S+R +EV   + ++    T+G  VN  E +   T ++T R+AFG    + Q+ F+K+++E   L   F++AD FP   +++  G  K ++  A   +D  ++ +I EH
Sbjct:   51 LPHRVLRDLAEKYGPLMHLQLGEVSAVVVTSPEMAKQVLKTHDIAFASRPKLLAMDIICYNRRDIAFSPYGDYWRQMRKICIMEVLSAKSVRSFSSIRHDEVVRLIDSIQPCFTSGELVNFTERIIWFTSSMTCRSAFGQVLKE-QEVFIKLIREVISLAEGFDVADIFPSYKFLHGFGGAKQKLLNAHRKVDSIVEDVIKEH 252          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71AP_ARATH (Cytochrome P450 71A25 OS=Arabidopsis thaliana GN=CYP71A25 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.632e-34
Identity = 71/208 (34.13%), Postives = 122/208 (58.65%), Query Frame = 2
Query:  161 NMAMMDQLTHRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVR-EEVDSTLQTVMNTTGSKVNIGELVFALTRNITYRAAFGSFSHDGQDEFVKILQEFSKLFGAFNIADFFPWMGWIN-ARGFYKRMARARESLDGFIDSIIDEH 778
            N+  + + THR L DL+++YG L+ L +G + V+ VS+ DMA+E+L+  D  FANRP +     L Y+  D+A A YG +WRQM+ +CVI L S +   S+  VR EE+   +  +  ++    N+ +++  LT ++  R A G   + G+ +F K+    S+L G F+I  F PW+ W++  RG+  ++ +  + LD F + ++ +H
Sbjct:   42 NLHQLGRHTHRSLCDLSRRYGPLMLLHLGRVPVLIVSSADMAQEILKTHDQAFANRPRSKLSQKLLYNNRDVASAPYGEYWRQMKSVCVIHLLSNKMVRSFRDVREEEITLMMAKIRKSSSLPFNVSKVLECLTNDVICRVALGR-KYGGETDFKKLTDRLSELLGTFSIGSFVPWLAWVDWIRGWDAQLDKMGKDLDDFFEKVVQDH 248          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71AQ_ARATH (Cytochrome P450 71A26 OS=Arabidopsis thaliana GN=CYP71A26 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.019e-33
Identity = 65/209 (31.10%), Postives = 124/209 (59.33%), Query Frame = 2
Query:  161 NMAMMDQLTHRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVR-EEVDSTLQTVMNTTGSKVNIGELVFALTRNITYRAAFGSFSHDGQDEFVKILQEFSKLFGAFNIADFFPWMGWIN-ARGFYKRMARARESLDGFIDSIIDEHM 781
            N+  + +  HR L  L+ +YG L+ L  G + V+ VS+ ++A++VL+  D VFA+RP +     L YD+ D+A A YG +WRQM+ +CV+ LFS +   S+  VR EE+   ++ +  +    VN+ +++ +LT ++  + A G   + G+ +F ++++  +KL G F++  + PW+ WI+  RG   ++ +    +D F + ++ +H+
Sbjct:   43 NLHQLGRHPHRSLCSLSHRYGPLMLLHFGRVPVLVVSSAELARDVLKTHDRVFASRPRSKIFEKLLYDKHDVASAPYGEYWRQMKSVCVLHLFSNKMVRSFREVREEEISLMMEKIRKSISLPVNLSKILVSLTNDVICKVALGR-KYGGETDFKELMERLNKLLGTFSVGSYVPWLAWIDWIRGLDCQLEKTANDVDKFFERVVQDHV 250          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71AL_ARATH (Cytochrome P450 71A21 OS=Arabidopsis thaliana GN=CYP71A21 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.249e-33
Identity = 66/209 (31.58%), Postives = 125/209 (59.81%), Query Frame = 2
Query:  161 NMAMMDQLTHRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVR-EEVDSTLQTVMNTTGSKVNIGELVFALTRNITYRAAFGSFSHDGQDEFVKILQEFSKLFGAFNIADFFPWMGWIN-ARGFYKRMARARESLDGFIDSIIDEHM 781
            N+  +    HR L  L+ +YG L+ L +G + V+ VS+ D+A+++L+  D VFA+RP +     L YD  D+AFA YG +WRQ++ +CV++L S +   S+ +VR EE+   ++ +  ++  +VN+ EL+ +LT ++  R A G   + G+ +  ++++    L G F++  + PW+GWI+   G   ++ +    LD F++ ++ +H+
Sbjct:   44 NLHQLGHHPHRSLCSLSHRYGPLMLLHLGRVPVLVVSSADVARDILKTHDRVFASRPRSKLFEKLFYDGRDVAFAPYGEYWRQIKSVCVLRLLSNKMVTSFRNVRQEEISLMMEKIQKSSSLQVNVSELLGSLTNDVISRIALGR-KYSGETDSKELMKRLMMLMGEFSVGTYVPWLGWIDWISGLDGQLNKTGNDLDEFLEKVVQDHV 251          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71A9_SOYBN (Cytochrome P450 71A9 OS=Glycine max GN=CYP71A9 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.249e-33
Identity = 81/212 (38.21%), Postives = 125/212 (58.96%), Query Frame = 2
Query:  161 NMAMMDQLTHRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVR-EEVDSTLQTVMNTTGSKVNIGELVFALTRNITYRAAFGSFSHDGQDEFVKI---LQEFSKLFGAFNIADFFPWMGWINA-RGFYKRMARARESLDGFIDSIIDEHM 781
            N+  +  L H+ L  L+ K+G L+ LQ+G+I  + VS+ +MA+E+ +  D VF+ RP+  A   L Y  + ++FA YG +WR+MRKI +++L S +R +S+ +VR EEV   LQT+  + G  VN+ EL  +LT NI  R A G  +  G D+  K+   L+E   + G F   DFFP +GW+N   G   R+ +    +D F D +I EH+
Sbjct:   45 NLHQLGTLPHQSLQYLSNKHGPLMFLQLGSIPTLVVSSAEMAREIFKNHDSVFSGRPSLYAANRLGYG-STVSFAPYGEYWREMRKIMILELLSPKRVQSFEAVRFEEVKLLLQTIALSHG-PVNLSELTLSLTNNIVCRIALGKRNRSGADDANKVSEMLKETQAMLGGFFPVDFFPRLGWLNKFSGLENRLEKIFREMDNFYDQVIKEHI 254          
BLAST of FC877818 vs. ExPASy Swiss-Prot
Match: C71AO_ARATH (Cytochrome P450 71A24 OS=Arabidopsis thaliana GN=CYP71A24 PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 1.169e-32
Identity = 66/209 (31.58%), Postives = 123/209 (58.85%), Query Frame = 2
Query:  161 NMAMMDQLTHRGLADLAKKYGGLLHLQMGAIHVVAVSTPDMAKEVLQAQDLVFANRPANVAITYLTYDRADMAFANYGPFWRQMRKICVIKLFSRRREESWASVR-EEVDSTLQTVMNTTGSKVNIGELVFALTRNITYRAAFGSFSHDGQDEFVKILQEFSKLFGAFNIADFFPWMGWIN-ARGFYKRMARARESLDGFIDSIIDEHM 781
            N+  + +  HR L  L+ +YG L+ L  G++ V+ VS+ D AK+VL+  D VFA+RP +     + Y+  D+A A YG +WRQM+ +CV+ LFS +   S+  VR EE+   ++ +  ++  ++N+ E++  LT N+  R A G   + G+ +F  +++  ++L G F++  +  W+ WI+  RG   ++ +    LD F++ ++ +H+
Sbjct:   45 NLHQLGRHPHRSLCSLSHRYGPLMLLHFGSVPVLVVSSADAAKDVLKTHDRVFASRPRSKIFDKIFYNGRDVALAPYGEYWRQMKSVCVLHLFSNKMVRSFRDVRQEEISLMIEKIRISSSLRINLSEILVNLTNNVICRVALGR-KYGGKTDFKDLMKRLTRLLGEFSVGSYVSWLAWIDWIRGLDGQLIKISNDLDEFLERVVQDHV 252          
The following BLAST results are available for this feature:
BLAST of FC877818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
C84A1_ARATH8.809e-8964.34Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CY... [more]
C71D6_SOLCH3.177e-3840.80Cytochrome P450 71D6 OS=Solanum chacoense GN=CYP71... [more]
C71DB_LOTJA1.577e-3736.29Cytochrome P450 71D11 (Fragment) OS=Lotus japonicu... [more]
C71A1_PERAE1.022e-3635.60Cytochrome P450 71A1 OS=Persea americana GN=CYP71A... [more]
C71D7_SOLCH5.072e-3638.42Cytochrome P450 71D7 OS=Solanum chacoense GN=CYP71... [more]
C71AP_ARATH1.632e-3434.13Cytochrome P450 71A25 OS=Arabidopsis thaliana GN=C... [more]
C71AQ_ARATH4.019e-3331.10Cytochrome P450 71A26 OS=Arabidopsis thaliana GN=C... [more]
C71AL_ARATH5.249e-3331.58Cytochrome P450 71A21 OS=Arabidopsis thaliana GN=C... [more]
C71A9_SOYBN5.249e-3338.21Cytochrome P450 71A9 OS=Glycine max GN=CYP71A9 PE=... [more]
C71AO_ARATH1.169e-3231.58Cytochrome P450 71A24 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA58BG11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877818 ID=FC877818; Name=FC877818; organism=Citrus clementina; type=EST; length=892bp
TCGACTTACAGCCATGGATTCGCTGCTTCAAACTCTTCAATCATCACCAA
TCTTCTTCATCATTCTTCCTCTCTTACTGGCTTTCGTTCTCTTCTCATTA
ACAACCTTACGTAAAAAACTCCCATACCCTCCAGGCCCAAAAGGGTATCC
GATCATCGGCAACATGGCCATGATGGACCAACTGACTCACCGCGGCCTCG
CAGACCTTGCCAAGAAATACGGCGGCCTCCTCCATCTCCAAATGGGAGCA
ATTCATGTCGTCGCCGTATCGACGCCGGACATGGCTAAAGAAGTTCTTCA
GGCTCAAGATCTCGTCTTCGCAAACCGGCCAGCAAACGTGGCCATAACAT
ATCTAACTTACGACAGAGCCGACATGGCGTTTGCCAACTACGGACCCTTT
TGGCGACAAATGCGAAAGATCTGCGTGATTAAGCTCTTCAGCAGAAGACG
AGAGGAATCGTGGGCGTCAGTAAGAGAAGAGGTGGACTCAACATTACAAA
CAGTGATGAACACAACAGGCTCAAAAGTTAATATAGGCGAATTAGTGTTT
GCTCTAACGAGGAACATTACATATAGGGCAGCATTTGGGTCGTTTTCACA
TGATGGGCAAGATGAATTTGTGAAGATTCTGCAAGAATTTTCCAAGCTTT
TTGGGGCATTTAATATTGCCGATTTTTTTCCGTGGATGGGGTGGATTAAT
GCGAGGGGATTTTATAAGAGGATGGCTAGGGCAAGGGAGTCACTAGATGG
GTTCATTGATAGCATTATTGATGAGCACATGAAGAAGAAGAAGAAGAAGA
ATGTCCGAGATGAAGAAGGCAAAATTAATTACAATGATGGTGAAGCTGAG
GCTGAGGCTGATACTGATATGGTCGATGAATTAATGGCTTTT
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