FC877822

Overview
NameFC877822
Unique NameFC877822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877822_ssr79 microsatellite FC877822_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877822_ssr607 microsatellite FC877822_ssr607:607..624. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877822_ssr642 microsatellite FC877822_ssr642:642..662. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12070 contig Ccv1_Contig12070:42..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.479e-46
Identity = 105/183 (57.38%), Postives = 114/183 (62.30%), Query Frame = 2
Query:  251 AKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATPEELSEIVELPSLGASYD-ESSESGNDFVFVDS 796
            ++K+ KR RD  KHPVYRGVRMR WGKWVSEIREPRKKSRIWLGTF TPEMAARAHDVAALSIKG +AILNFP+LA S PRP S SPRD+Q AA KAA ME                                                  EEL EIVELPSLGASYD +S+  GN+FVF DS
Sbjct:   35 SEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHME---------------PTTSFSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNEFVFYDS 202          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.523e-46
Identity = 102/183 (55.74%), Postives = 117/183 (63.93%), Query Frame = 2
Query:  254 KKQKKRP-RDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATPEELSEIVELPSLGASYDESSESGNDFVFVDSS 799
            +++KK+P +D  KHPVYRGVR R WGKWVSEIREPRKKSRIWLGTF +PEMAARAHDVAALSIKGASAILNFP LAGS PRP+S SPRD+Q AA KAA ME   +                                              EEL EIVELPSLG+SYD  ++ GN+F+F DS+
Sbjct:   20 EEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQS-----------------FSSSSSLTFSSSQSSSSLESLVSSSATGSEELGEIVELPSLGSSYDGLTQLGNEFIFSDSA 185          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.817e-43
Identity = 103/180 (57.22%), Postives = 114/180 (63.33%), Query Frame = 2
Query:  263 KKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATPEELSEIVELPSLGASYDESSESGNDFVFVDSSW 802
            KKR R D   P YRGVRMR WGKWVSEIREPRKKSRIWLGTFSTPEMAARAHD AAL+IKG SA+LNFP+LA  LPRPAS SPRDVQAAAA AA+M+   +                                          TA  EELSEIVELPSL  SYDES    ++FV+VDS++
Sbjct:   34 KKRVRSD---PGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAAAVAAAMDFSPSSSSLVVSDPTTVIAPAETQLSSSSYSTCTSSSLSPSSEEAASTA--EELSEIVELPSLETSYDESL---SEFVYVDSAY 205          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.902e-39
Identity = 91/183 (49.73%), Postives = 107/183 (58.47%), Query Frame = 2
Query:  248 AAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATPEELSEIVELPSLGASYDESSESGNDFVFVDS 796
            A     K  ++++K PVYRGVRMR+WGKWVSEIREPRKKSRIWLGTF T EMA RAHDVAA+SIKG SAILNFP+L+  LPRP S SPRDV+AAA KAA M+                                              +   ++L EIV+LPSLG S +ES    N+FV  DS
Sbjct:    2 ADSSSDKEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAALMDFDTTAFRSDTETSETTTSNKMSESSESNETVSFSSSSWSSVTSIEESTVSDDLDEIVKLPSLGTSLNES----NEFVIFDS 180          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.813e-36
Identity = 78/109 (71.56%), Postives = 87/109 (79.82%), Query Frame = 2
Query:  254 KKQKKRPRDD------SKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFD 562
            K +KKR +DD      SKHP +RGVRMR WGKWVSEIREP+KKSRIWLGTFST EMAARAHDVAAL+IKG SA LNFP+LA  LPRPAS  P+D+QAAAA AA+    D
Sbjct:   24 KPKKKRAKDDDDEKVVSKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQAAAAAAAAAVAID 132          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.175e-35
Identity = 73/106 (68.87%), Postives = 87/106 (82.08%), Query Frame = 2
Query:  263 KKRPRDDS--------KHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEI 556
            +KR RD S        +HPVYRGVRMR+WGKWVSEIR+PRKK+RIWLGTF T +MAARAHDVAAL+IKG+SA+LNFP+LA   PRPAS SP D+Q AAA+AA+M +
Sbjct:   59 RKRRRDSSSASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVV 164          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF34_ARATH (Ethylene-responsive transcription factor ERF034 OS=Arabidopsis thaliana GN=ERF034 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.534e-35
Identity = 69/95 (72.63%), Postives = 81/95 (85.26%), Query Frame = 2
Query:  260 QKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 544
            ++++     KHP YRGVRMR+WGKWVSEIREPRKKSRIWLGT+ T EMAARAHDVAAL+IKG +A LNFPKLAG LPRP + SP+D+QAAA+ AA
Sbjct:   87 KRRKTNGGDKHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGTTAYLNFPKLAGELPRPVTNSPKDIQAAASLAA 181          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.617e-35
Identity = 73/101 (72.28%), Postives = 83/101 (82.18%), Query Frame = 2
Query:  251 AKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 553
            + K K   +  SK P +RGVRMR WGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAAL+IKG SA LNFP+LA  LPRPAS  P+D+Q AAA AA+++
Sbjct:   24 SSKTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAAAAVD 124          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.831e-35
Identity = 72/98 (73.47%), Postives = 83/98 (84.69%), Query Frame = 2
Query:  254 KKQKKRPRDDSKHPV-YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 544
            K++K    DD+K+P  YRGVRMR+WGKWVSEIREPRKKSRIWLGT+ T EMAARAHDVAAL+IKG S  LNFP+L+G LPRP S SP+D+QAAA KAA
Sbjct:   55 KRRKSNVSDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKAA 152          
BLAST of FC877822 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.216e-34
Identity = 73/102 (71.57%), Postives = 87/102 (85.29%), Query Frame = 2
Query:  248 AAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 553
            ++KK+K++ ++     VYRG RMR+WGKWVSEIREPRKKSRIWLGTF T EMAARAHDVAALSIKG+SAILNFP+LA  LPRP S S +D+QAAAA+AA M+
Sbjct:   12 SSKKKKEKTKEKG---VYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPELADFLPRPVSLSQQDIQAAAAEAALMD 110          
The following BLAST results are available for this feature:
BLAST of FC877822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
DREB3_ARATH1.479e-4657.38Dehydration-responsive element-binding protein 3 O... [more]
TINY_ARATH2.523e-4655.74Ethylene-responsive transcription factor TINY OS=A... [more]
ERF37_ARATH5.817e-4357.22Ethylene-responsive transcription factor ERF037 OS... [more]
ERF43_ARATH3.902e-3949.73Ethylene-responsive transcription factor ERF043 OS... [more]
ERF38_ARATH1.813e-3671.56Ethylene-responsive transcription factor ERF038 OS... [more]
ERF36_ARATH1.175e-3568.87Ethylene-responsive transcription factor ERF036 OS... [more]
ERF34_ARATH1.534e-3572.63Ethylene-responsive transcription factor ERF034 OS... [more]
ERF39_ARATH2.617e-3572.28Ethylene-responsive transcription factor ERF039 OS... [more]
ERF35_ARATH5.831e-3573.47Ethylene-responsive transcription factor ERF035 OS... [more]
ERF42_ARATH2.216e-3471.57Ethylene-responsive transcription factor ERF042 OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877822 ID=FC877822; Name=FC877822; organism=Citrus clementina; type=EST; length=919bp
CTCTACTTCCTCTCACCTCCCACTTCCCTCCCACTGAATCCCCTCCAAAA
CGCTGCGTTTTTAATTGTTTGTTTCATGCTCTCTCTCTCTTGCTCTCCAT
ATACCACAACATTATATAATGACTGAGTGGAATAGCTCGGAGGCCGACTC
GAACAACTCACCTTCGTCGTCCGGGTCGTCATCTCTGACAAACCCGCCAA
CCGGGAAACCCGTTACGTGCGACCCGGACCCGACCCCGACCCCGGATGCC
GCCAAGAAGCAGAAGAAGAGGCCGAGGGACGACAGCAAGCACCCGGTGTA
CAGAGGGGTCCGCATGCGGGCGTGGGGGAAGTGGGTATCCGAGATCCGAG
AGCCCAGGAAGAAGAGTCGGATCTGGCTGGGCACGTTCTCGACGCCCGAA
ATGGCGGCACGCGCGCACGACGTGGCAGCATTGAGCATCAAAGGCGCCTC
CGCCATTCTCAACTTCCCCAAACTGGCCGGGTCCCTGCCCCGACCCGCTT
CCAAATCCCCGCGAGACGTCCAAGCCGCAGCTGCCAAAGCCGCTTCGATG
GAAATCTTCGACAACCCATTACCCTCAATATCTCACTCGTCATCTTCATC
ATCGCTGTCGTCGTCGTCGTCGTCGCCAACGTCAACACCAACGTCGTCGT
CGTCGTCGTCGTCACCATTGGTGGTACCGAGTGACGTGTCGACAGCGACG
CCGGAGGAGCTGAGTGAGATAGTGGAGTTGCCCAGTCTCGGCGCGAGTTA
CGACGAGTCGAGCGAGTCCGGGAATGATTTCGTGTTCGTGGACTCGTCGT
GGTATGATTATAACTATGATTACAATTACTATTATAATATCGAAGAAGAA
GGAGAGTGTTTTTATTTTATGAATAATGATTTCATGCAAGTGCAAAATAG
TAGCAGTGGTGGTGCGATT
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