FC877823

Overview
NameFC877823
Unique NameFC877823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length890
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3400 contig Ccv1_Contig3400:226..1115. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC877823 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.353e-23
Identity = 69/105 (65.71%), Postives = 76/105 (72.38%), Query Frame = 2 
Query:  599 LRRRWRDVLPLRIRDFATRSRSGRNRILDWAEIL----NNSIEFRLEAPESDRYIGNPADYMD-AAGYEALLQNLAESD----GGRRGAPRAAKSAVLELPTVEI 886
            LRRR R   PL      T+SR+GRNRILDWAEIL    +NSIEFR+E   SDRY GNPADY+D AAGYEALLQNLAE D    GGRRGAP AAKSA+  L T E+
Sbjct:  151 LRRRNR--FPLT----TTQSRTGRNRILDWAEILMGIEDNSIEFRME---SDRYAGNPADYIDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEV 246

HSP 2 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 41/101 (40.59%), Postives = 53/101 (52.48%), Query Frame = 2 
Query:  125 YWCHHCEKRVSIETLANLPDVICHECKNGFVESIXXXXXXXXXXXXXXXD----HVDDPSFGSQFLQVLRLIAQAARDEDAPQQLTQDPQYGHDFLRIELD 415
            +WC+HC KRV +ETL +   V+C EC  GFVESI                    +V+D S GS FLQ+LRL+A A      P+ L     Y  DF R+EL+
Sbjct:   15 HWCYHCNKRVVVETLDDF--VVCCECNKGFVESIQPTPAAYSSPAPPQPLSPDLNVEDSSIGSHFLQMLRLLAHAPSQRSPPRHL-DVLSYEDDFFRLELN 112
The following BLAST results are available for this feature:
BLAST of FC877823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CIP8_ARATH8.353e-2365.71E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA99CF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877823 ID=FC877823; Name=FC877823; organism=Citrus clementina; type=EST; length=890bp
CTTTTTCTTTTATTATCTCCATAGGACACACCGTGCAATCCGTAACTGCA
GCTTGATGGCCGAATCTCCATCTCAGGCACCGACACCGACAACACCTACT
GCGTCGGATACTGACCCGACGCAATATTGGTGCCATCACTGTGAGAAACG
TGTGTCAATCGAAACCCTTGCCAATCTCCCCGATGTTATTTGTCATGAAT
GTAAGAACGGCTTTGTCGAATCAATCCCCGTAACGTTAACCCCACCCTTT
TCCCCACCTTCACTGACCCCTGATCACGTCGATGACCCCTCCTTCGGATC
CCAGTTCCTTCAGGTCCTGCGTTTAATAGCGCAAGCCGCGCGTGATGAGG
ACGCGCCCCAGCAGCTTACCCAGGATCCTCAGTATGGACATGATTTTCTT
CGAATTGAGCTCGATGGATGGGAGAACGATGCGCGTGAGGATGAAAATGA
TGAAAACGAAGAGAACCGAAACGTTGACGAAGAAGGGGACGAAAATGAAA
ACGAAAACGAAAACGAAGACGACGAATAGAATGAAGGAGGAGAAGATCGA
TCTGATAACGAGAACGAAGAGAATATAGAAAATGAAGACGAAGAAGATCT
GAGACGGAGGTGGCGGGATGTGCTCCCCCTACGGATCCGAGACTTCGCGA
CCCGATCGAGATCCGGTCGTAATCGGATCCTGGACTGGGCCGAGATTCTG
AACAACTCGATAGAATTTCGACTTGAAGCTCCGGAATCCGACCGGTACAT
AGGCAATCCTGCGGATTACATGGACGCAGCTGGATACGAGGCGTTGTTGC
AGAACTTAGCTGAAAGTGACGGTGGTAGGAGAGGGGCCCCGCGCGCGGCG
AAATCTGCTGTGTTAGAGCTACCAACGGTGGAGATTTTGT
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