FC877826

Overview
NameFC877826
Unique NameFC877826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877826_ssr143 microsatellite FC877826_ssr143:143..152. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5148 contig Ccv1_Contig5148:1..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877826 vs. ExPASy Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.395e-38
Identity = 74/110 (67.27%), Postives = 89/110 (80.91%), Query Frame = 3
Query:  354 DTILFEGCDYNHWLITMEFPKDPKPTPEEMVRTYEETCAKGLNISLEEAKKRIYACSTTTYQGFQAIMTEEESEKFQGIPGVVFILPDSYIDPQNKEYGGDKYINGTIIP 683
            +TI+  GCDYNHWLI MEFPKDP PT E+M+ TY  T A  L  S+EEAKK +YA STTTY GFQ  +TEE SEKF+G+PGV+++LPDSYID +NK+YGGDKY+NG IIP
Sbjct:   77 ETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLG-SMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIP 185          
BLAST of FC877826 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.713e-20
Identity = 46/113 (40.71%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  354 DTILFEGCDYNHWLITMEFPKDPKPTPEEMVRTYEETCAKGLNISLEEAKKRIYACSTTTYQGFQAIMTEEESEKFQGIPGVVFILPDSYIDPQNKEYGGDKYINGTIIPRPP 692
            +TIL +GCD+ HWL+ +E P   +PT +E++ +Y +T A+ +  S +EA+ +IY+ ST  Y  F A+++E+ S K + +  V ++LPDSY+D +NK+YGG+ +I+G  +P  P
Sbjct:   88 ETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTLAQIVG-SEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYDP 198          
The following BLAST results are available for this feature:
BLAST of FC877826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DAG_ANTMA1.395e-3867.27DAG protein, chloroplastic OS=Antirrhinum majus GN... [more]
UMP1_ARATH1.713e-2040.71Uncharacterized protein At3g15000, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA99CF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877826 ID=FC877826; Name=FC877826; organism=Citrus clementina; type=EST; length=881bp
CATTTACATTTTTCATATTTCCCAAAACCCTAAACAAAATCTTCACTCTC
TCACTCGAGACACTCACTGACGCGCAAGCAATGGCCCACACCGCCATCCT
CCGCCTCCGCCGGTCACTACCGGCGATCGCCGCTCTCCGAAGCTCTCTCT
CTGTGGCCGTCCCTGCACTCTCCGCATCTACTCCTCTCGTGAACCCTTCC
ATTTCATCGGCGTCGTCATCGCTAATCCCGTCCTTCTCCTCCATCATCAT
CCAATCTCGGCCGTTCAGATCGTCCCCGACGATCTCCCTCTCGTCTACGC
CGTCGGGTAACAAGACGTACCACTTGTATAAGGACGGCGACGAGATCACA
CCCGACACGATTCTGTTCGAGGGTTGCGATTACAATCACTGGCTTATCAC
TATGGAGTTTCCTAAAGACCCGAAACCCACGCCCGAAGAAATGGTTCGGA
CCTATGAAGAGACTTGCGCTAAAGGACTCAACATTAGCTTGGAGGAGGCA
AAGAAACGAATTTATGCTTGTAGCACAACGACTTATCAAGGGTTTCAAGC
TATAATGACTGAAGAAGAGTCAGAAAAGTTTCAAGGTATACCTGGAGTTG
TTTTCATATTGCCAGATTCTTACATCGATCCACAGAACAAGGAATATGGA
GGTGACAAATACATCAATGGGACTATCATACCAAGACCACCTCCTATTCA
ACATCATACAGGGGGGAGATTCCGTGATCGAAACAGGAACTATGATCGAA
GACGTGACGTTAATTTTGGGGCCCCACGCAGTCAGCAAGGAGGTCCGATG
CAAAATCAGCAAGCATGGCCTGGAAATCCGCAACAGAATTCTTCAGAACC
TATGCAAGGAGATGGTAGAAGCTATGGTGCT
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