FC877827
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877827 vs. ExPASy Swiss-Prot
Match: RH22_ARATH (DEAD-box ATP-dependent RNA helicase 22 OS=Arabidopsis thaliana GN=RH22 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 6.839e-37 Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1 Query: 556 QAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQ 846 QA + +LSGKDV++AAETGSGKTH YL P+I++L DSE +N ++ P P + SL+LCPNV+LCEQVVRM N L ++G PL+R AVCG Q Sbjct: 107 QAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQ 203 HSP 2 Score: 59.3066 bits (142), Expect = 6.839e-37 Identity = 44/113 (38.94%), Postives = 55/113 (48.67%), Query Frame = 2 Query: 131 MILHRSSSMFHFYKLSS--PPKLXXXXXXXXXXXXXXXXXXXYPLRVRFLGLNQWKGRPFRGFXXXXXXXSDKNGSSDTFFADDNVTWKSLGLSDLLIRALENSGFGRPSIVQ 463 MIL RS S+ H +SS P KL + R LN+ + RGF +K G+ DTFFAD V+WKSLGLSD + AL +SGF RPS+ Q Sbjct: 1 MILSRSVSVLHLCGVSSSAPSKLLSQRFKVSFALAYGSS-----VSFRLSSLNRSDRKWVRGFASATEAEVEKKGN-DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQ 107
BLAST of FC877827 vs. ExPASy Swiss-Prot
Match: RH22_ORYSJ (DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica GN=Os09g0383400 PE=2 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 2.666e-32 Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 1 Query: 553 LQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 840 +QAA + VL+ DV++AAETGSGKTH YLVPLIEKLC+ +E+ NS + +LVLCPNV+LCEQVVRMAN+L ++GEPL A AVCG Sbjct: 108 VQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVCG 203 HSP 2 Score: 48.521 bits (114), Expect = 2.666e-32 Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 2 Query: 344 NGSSDTFFADDNVTWKSLGLSDLLIRALENSGFGRPSIVQ 463 NG D FF++++ +W+SLG+SD L AL +G RPS+VQ Sbjct: 70 NGDGDGFFSEESTSWESLGVSDRLASALHGAGLARPSLVQ 109 The following BLAST results are available for this feature:
BLAST of FC877827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 2
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877827 ID=FC877827; Name=FC877827; organism=Citrus clementina; type=EST; length=930bpback to top |