FC877827

Overview
NameFC877827
Unique NameFC877827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length930
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877827 vs. ExPASy Swiss-Prot
Match: RH22_ARATH (DEAD-box ATP-dependent RNA helicase 22 OS=Arabidopsis thaliana GN=RH22 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.839e-37
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1
Query:  556 QAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQ 846
            QA  +  +LSGKDV++AAETGSGKTH YL P+I++L     DSE +N ++ P P +  SL+LCPNV+LCEQVVRM N L  ++G PL+R  AVCG Q
Sbjct:  107 QAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQ 203          

HSP 2 Score: 59.3066 bits (142), Expect = 6.839e-37
Identity = 44/113 (38.94%), Postives = 55/113 (48.67%), Query Frame = 2
Query:  131 MILHRSSSMFHFYKLSS--PPKLXXXXXXXXXXXXXXXXXXXYPLRVRFLGLNQWKGRPFRGFXXXXXXXSDKNGSSDTFFADDNVTWKSLGLSDLLIRALENSGFGRPSIVQ 463
            MIL RS S+ H   +SS  P KL                     +  R   LN+   +  RGF        +K G+ DTFFAD  V+WKSLGLSD +  AL +SGF RPS+ Q
Sbjct:    1 MILSRSVSVLHLCGVSSSAPSKLLSQRFKVSFALAYGSS-----VSFRLSSLNRSDRKWVRGFASATEAEVEKKGN-DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQ 107          
BLAST of FC877827 vs. ExPASy Swiss-Prot
Match: RH22_ORYSJ (DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica GN=Os09g0383400 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-32
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 1
Query:  553 LQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 840
            +QAA +  VL+  DV++AAETGSGKTH YLVPLIEKLC+    +E+ NS    +     +LVLCPNV+LCEQVVRMAN+L  ++GEPL  A AVCG
Sbjct:  108 VQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVCG 203          

HSP 2 Score: 48.521 bits (114), Expect = 2.666e-32
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 2
Query:  344 NGSSDTFFADDNVTWKSLGLSDLLIRALENSGFGRPSIVQ 463
            NG  D FF++++ +W+SLG+SD L  AL  +G  RPS+VQ
Sbjct:   70 NGDGDGFFSEESTSWESLGVSDRLASALHGAGLARPSLVQ 109          
The following BLAST results are available for this feature:
BLAST of FC877827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RH22_ARATH6.839e-3756.70DEAD-box ATP-dependent RNA helicase 22 OS=Arabidop... [more]
RH22_ORYSJ2.666e-3259.38DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sa... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA53BF03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877827 ID=FC877827; Name=FC877827; organism=Citrus clementina; type=EST; length=930bp
CAAATCCACCGCCAAAATCGGCACTGTGCGTAACTTGTGCTTGGAACCTT
AAGTCCTTAAACCCTAAACCCCATCCTCCTTCTCTTGCTCTTCTGAGCGA
TACACGGAAGCCCACACACAAACAAAACAAATGATTCTCCATCGTTCATC
TTCAATGTTCCACTTTTATAAACTATCATCTCCGCCTAAACTCCTTTCCA
AATTCAACGCCTCTTCTTCATGTCTCTCCAACTCTGCTCCATCTTCATTT
TATCCGCTCCGCGTCCGCTTTCTCGGGCTCAACCAATGGAAAGGCAGACC
GTTCAGGGGATTCGCGGCTGCCGCTGCTGTCGTATCGGATAAAAATGGAT
CAAGCGATACGTTCTTTGCCGACGATAATGTCACATGGAAGTCTCTAGGC
TTATCCGATCTCCTCATTCGTGCTCTCGAAAATTCCGGCTTTGGGAGACC
CTCTATTGTTCAGGTTCCCTAATTCACTGTTGTTATTTCTAAAGGAAACC
TTAAATAATAATGTTAAAAGAAAATGAATGCTGGATAATGGAAAATTTCC
ATTTGCAGGCTGCTTCCGTAGGACCTGTTCTTTCAGGAAAAGATGTTGTG
ATTGCGGCAGAGACTGGTAGCGGTAAAACACATAGCTACCTCGTCCCTCT
GATTGAAAAGCTGTGCACTGCATTGGGTGATTCGGAGAATTCCAATTCTG
ATAAAGAGCCGACTCCTCCCCGTGCACCTTCTCTAGTTCTTTGTCCAAAT
GTAGTACTTTGTGAACAAGTGGTTCGAATGGCTAATGCTCTTTCTGCAGA
TAATGGTGAACCACTTGTACGAGCTGTAGCTGTCTGTGGAGGACAGGTTC
TAATGCTCTAATCTTTCTTGATACTGATACAACTTTTACATATTGGGATG
GGCAATTGGGTAAACTGATGTTATTGTGTC
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