FC877828

Overview
NameFC877828
Unique NameFC877828
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6544 contig Ccv1_Contig6544:1..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: OPD23_ARATH (Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At1g54220 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.430e-58
Identity = 130/211 (61.61%), Postives = 146/211 (69.19%), Query Frame = 2
Query:  185 MAYASHIINHSKKLKNVSNLLWHENAVLVRWFSND--AVSSRDDLLKIHRHVYVPVESERXXXXXXXXXXXXXXXXXXXXXXXARKAGSPIAGSFLNRGFACSKVHLKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPS 811
            MAYAS IINHSKKLK+VS LL  ENA  +R++SN   A  +R+D     R  Y P+E                          +   G PI G    + F+C  +   RGFSS S LPPHQEIGMPSLSPTM EGNIARWLKKEGDKV+PGEVLCEVETDKATVEMECMEEGYLAKIVK +GSKEI+VGEVIAITVE+EEDI KFKDY+PS
Sbjct:    1 MAYASRIINHSKKLKDVSTLLRRENAATIRYYSNTNRAPLNREDTFN-SRLGYPPLER---ISICSTSTLPVSIIFSTTRSNLSSAMGRPIFG----KEFSCL-MQSARGFSSGSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVAPGEVLCEVETDKATVEMECMEEGYLAKIVKAEGSKEIQVGEVIAITVEDEEDIGKFKDYTPS 202          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: OPD22_ARATH (Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At3g13930 PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 9.980e-58
Identity = 127/209 (60.77%), Postives = 146/209 (69.86%), Query Frame = 2
Query:  194 ASHIINHSKKLKNVSNLLWHENAVLVRWFSNDAVSS---RDDLLKIHRHVYVPVESERXXXXXXXXXXXXXXXXXXXXXXXARKAGSPIAGSFLNRGFACSKVHLKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPS 811
            AS IINHSKKLK+VS LL  ++AV VR FSN    S   R+D+ K   + Y  VE                          + K  SP+AG  L + F  S++   RGFSS S LPPHQEIGMPSLSPTM EGNIARWLKKEGDKV+PGEVLCEVETDKATVEMECMEEG+LAKIVK +G+KEI+VGEVIAITVE+E+DI KFKDY+PS
Sbjct:    2 ASRIINHSKKLKHVSALLRRDHAVAVRCFSNSTHPSLVGREDIFKARLN-YSSVER-------ISKCGTGNVTMLSGISTTSTKLSSPMAGPKLFKEFISSQMRSVRGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVAPGEVLCEVETDKATVEMECMEEGFLAKIVKEEGAKEIQVGEVIAITVEDEDDIQKFKDYTPS 202          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODP2_RAT (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Rattus norvegicus GN=Dlat PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.554e-26
Identity = 54/93 (58.06%), Postives = 75/93 (80.65%), Query Frame = 2
Query:  527 LPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYS 805
            LPPHQ++ +PSLSPTMQ G IARW KKEG+K+S G+++ EVETDKATV  E +EE Y+AKI+  +G++++ VG +I ITVE+ +DI  FK+Y+
Sbjct:   79 LPPHQKVPLPSLSPTMQAGTIARWEKKEGEKISEGDLIAEVETDKATVGFESLEECYMAKILVPEGTRDVPVGSIICITVEKPQDIEAFKNYT 171          

HSP 2 Score: 106.301 bits (264), Expect = 2.322e-22
Identity = 48/97 (49.48%), Postives = 69/97 (71.13%), Query Frame = 2
Query:  521 SGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPS 811
            S  P H +I +P+LSPTM  G + RW KK G+K+S G++L E+ETDKAT+  E  EEGYLAKI+  +G++++ +G  + I VE++EDI  F DY P+
Sbjct:  203 SSYPVHMQIVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKQEDIAAFADYRPT 299          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODP2_MOUSE (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dlat PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.554e-26
Identity = 54/93 (58.06%), Postives = 75/93 (80.65%), Query Frame = 2
Query:  527 LPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYS 805
            LPPHQ++ +PSLSPTMQ G IARW KKEG+K+S G+++ EVETDKATV  E +EE Y+AKI+  +G++++ VG +I ITVE+ +DI  FK+Y+
Sbjct:   87 LPPHQKVPLPSLSPTMQAGTIARWEKKEGEKISEGDLIAEVETDKATVGFESLEECYMAKILVPEGTRDVPVGSIICITVEKPQDIEAFKNYT 179          

HSP 2 Score: 106.686 bits (265), Expect = 1.778e-22
Identity = 48/97 (49.48%), Postives = 69/97 (71.13%), Query Frame = 2
Query:  521 SGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPS 811
            S  P H +I +P+LSPTM  G + RW KK G+K+S G++L E+ETDKAT+  E  EEGYLAKI+  +G++++ +G  + I VE++EDI  F DY P+
Sbjct:  212 SSYPTHMQIVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGAPLCIIVEKQEDIAAFADYRPT 308          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODP2_HUMAN (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLAT PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 3.462e-26
Identity = 53/93 (56.99%), Postives = 74/93 (79.57%), Query Frame = 2
Query:  527 LPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYS 805
            LPPHQ++ +PSLSPTMQ G IARW KKEGDK++ G+++ EVETDKATV  E +EE Y+AKI+  +G++++ +G +I ITV + EDI  FK+Y+
Sbjct:   88 LPPHQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYT 180          

HSP 2 Score: 107.842 bits (268), Expect = 7.982e-23
Identity = 48/97 (49.48%), Postives = 69/97 (71.13%), Query Frame = 2
Query:  521 SGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPS 811
            S  PPH ++ +P+LSPTM  G + RW KK G+K+S G++L E+ETDKAT+  E  EEGYLAKI+  +G++++ +G  + I VE+E DI  F DY P+
Sbjct:  213 SSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPT 309          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: OPD21_ARATH (Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=LTA3 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.316e-25
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 2
Query:  521 SGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPSVSD 820
            S LPPH  + MP+LSPTM +GNIA+W KKEGDK+  G+V+ E+ETDKAT+E E +EEGYLAKI+  +GSK++ VG+ IA+ VE+ E I   K  S   S+
Sbjct:  207 SDLPPHVVLEMPALSPTMNQGNIAKWWKKEGDKIEVGDVIGEIETDKATLEFESLEEGYLAKILIPEGSKDVAVGKPIALIVEDAESIEAIKSSSAGSSE 306          

HSP 2 Score: 114.39 bits (285), Expect = 8.528e-25
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 2
Query:  515 SDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDI 784
            S +G      + MP+LSPTM  GN+ +W+KKEGDKV  G+VLCE+ETDKATVE E  EEG+LAKI+  +GSK+I V E IAI VEEE+DI
Sbjct:   78 SSTGPISQTVLAMPALSPTMSHGNVVKWMKKEGDKVEVGDVLCEIETDKATVEFESQEEGFLAKILVTEGSKDIPVNEPIAIMVEEEDDI 167          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODP2_YEAST (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Saccharomyces cerevisiae GN=PDA2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.316e-25
Identity = 52/91 (57.14%), Postives = 72/91 (79.12%), Query Frame = 2
Query:  530 PPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDY 802
            P H  IGMP+LSPTM +GN+A W KKEGD++SPGEV+ E+ETDKA ++ E  E+GYLAKI+  +G+K+I V + IA+ VE++ D+P FKD+
Sbjct:   32 PEHTIIGMPALSPTMTQGNLAAWTKKEGDQLSPGEVIAEIETDKAQMDFEFQEDGYLAKILVPEGTKDIPVNKPIAVYVEDKADVPAFKDF 122          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODP2_CAEEL (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Caenorhabditis elegans GN=F23B12.5 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.232e-24
Identity = 48/96 (50.00%), Postives = 70/96 (72.92%), Query Frame = 2
Query:  515 SDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDY 802
            S   LP H  + +P+LSPTM+ G +  W KKEGD++S G++LCE+ETDKAT+  E  EEGYLAKI+  +GSK++ +G+++ I V+ E D+  FKD+
Sbjct:   70 SSGNLPKHNRVALPALSPTMELGTVVSWQKKEGDQLSEGDLLCEIETDKATMGFETPEEGYLAKILIQEGSKDVPIGKLLCIIVDNEADVAAFKDF 165          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODP2_NEUCR (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Neurospora crassa GN=mrp-3 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 9.428e-24
Identity = 52/92 (56.52%), Postives = 64/92 (69.57%), Query Frame = 2
Query:  530 PPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYS 805
            PPH  + MP+LSPTM  G I  W KK GDK+ PGEVL E+ETDKA ++ E  EEG LAKI+K  G K++ VG  IAI VEE  D+  FKD++
Sbjct:   32 PPHTVVKMPALSPTMTSGGIGAWQKKPGDKIEPGEVLVEIETDKAQMDFEFQEEGVLAKILKDSGEKDVAVGNPIAILVEEGTDVNAFKDFT 123          
BLAST of FC877828 vs. ExPASy Swiss-Prot
Match: ODP2_RICBR (Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.982e-23
Identity = 47/84 (55.95%), Postives = 68/84 (80.95%), Query Frame = 2
Query:  551 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDY 802
            MP+LSPTM EGN+ARWLKKEGDK++PGEV+ E+ETDKAT+E+E ++EG LAKI+   GS+ + V  +IA+ +EE E++   +++
Sbjct:    7 MPALSPTMTEGNLARWLKKEGDKINPGEVIAEIETDKATMEVEAVDEGTLAKIIIPQGSQNVPVNSLIAVLIEEGEELSGIEEF 90          
The following BLAST results are available for this feature:
BLAST of FC877828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
OPD23_ARATH3.430e-5861.61Dihydrolipoyllysine-residue acetyltransferase comp... [more]
OPD22_ARATH9.980e-5860.77Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RAT1.554e-2658.06Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_MOUSE1.554e-2658.06Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_HUMAN3.462e-2656.99Dihydrolipoyllysine-residue acetyltransferase comp... [more]
OPD21_ARATH1.316e-2556.00Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_YEAST1.316e-2557.14Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_CAEEL4.232e-2450.00Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_NEUCR9.428e-2456.52Dihydrolipoyllysine-residue acetyltransferase comp... [more]
ODP2_RICBR7.982e-2355.95Dihydrolipoyllysine-residue acetyltransferase comp... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DB05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877828 ID=FC877828; Name=FC877828; organism=Citrus clementina; type=EST; length=866bp
AAAGTCCGAACCCTAATAAATTTCACGTTTTTAACCAAACTAAATCAGAC
CCTCTTTGATTCCTACTCTGTTCGTTCATCTCTCACTAAAAAAGCAATTT
AAAAAAAAAAAAACTATTTTTCTTGCTGAATTTTCATTGCTCTTTTTCTG
TTGATTTTTTTAGTGGTTTTTGGAAATATTAGTCATGGCGTATGCATCTC
ACATCATCAATCACTCTAAAAAGTTGAAGAATGTTTCAAATTTGCTGTGG
CATGAGAATGCTGTTTTGGTTCGTTGGTTTTCAAATGATGCTGTTAGTAG
CAGGGATGATCTTCTAAAGATTCATCGCCATGTATATGTGCCTGTGGAGA
GTGAAAGAGTCATTAATTCATCCGCCATTAGCTCTGTATCATCAGTAGGT
GTATTTAAGAAAAAATTTTGTAGTGTGGCAAGAAAAGCCGGAAGTCCCAT
TGCTGGATCTTTCCTCAACAGAGGATTTGCATGTTCAAAAGTACACTTGA
AGAGAGGATTTTCGTCAGATTCAGGTCTTCCTCCACACCAGGAGATTGGA
ATGCCCTCCCTTTCACCCACAATGCAAGAGGGTAATATTGCTCGGTGGTT
GAAGAAAGAGGGCGACAAGGTGTCTCCCGGTGAAGTACTCTGTGAAGTTG
AAACTGATAAAGCAACTGTTGAGATGGAATGTATGGAGGAAGGTTATCTT
GCCAAGATAGTAAAAGGAGATGGGTCAAAAGAAATTAAAGTTGGTGAGGT
TATTGCTATCACTGTTGAAGAAGAGGAAGATATTCCGAAGTTTAAAGATT
ACAGTCCTTCAGTGTCTGATGCTGGTGCTGCTCCAGCTAAAGAGCCTTCT
CCTCCTCCCCCTCCAA
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