FC877830

Overview
NameFC877830
Unique NameFC877830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length920
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10464 contig Ccv1_Contig10464:1..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: AFC2_ARATH (Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1)

HSP 1 Score: 468.774 bits (1205), Expect = 1.949e-131
Identity = 230/278 (82.73%), Postives = 253/278 (91.01%), Query Frame = 3
Query:   90 MEMERVTEFPFSNLDRRPRKRARLGWDV-PQVPKAQVGLFCGQEVGNVTSFAPPRAPSDHVTSSSLFVKGVARNGSPPWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDYKSSSHTPKDSSYFKRMPKSSAIKVIDFGSTTYER 920
            MEMERV EFP +++DRRPRKRARLGWDV PQ  KAQVG+FCGQE+GN++SFA   APSD+  SSSL VKGVARNGSPPWREDDKDGHY+F LG++LT RYKI+SKMGEGTFGQVLECWDRERKEMVA+KIVRG+KKYREAAMIEIE+LQQL KHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREI  QLLEC+AFMHDL MIHTDLKPEN+LLVSS+Y+K+P+YK  S   +D  Y KR+PKSSAIKVIDFGSTTYER
Sbjct:    1 MEMERVHEFPHTHMDRRPRKRARLGWDVLPQATKAQVGMFCGQEIGNISSFASSGAPSDN--SSSLCVKGVARNGSPPWREDDKDGHYIFELGDDLTPRYKIYSKMGEGTFGQVLECWDRERKEMVAVKIVRGVKKYREAAMIEIEMLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIGWQLLECVAFMHDLRMIHTDLKPENILLVSSDYVKIPEYK-GSRLQRDVCY-KRVPKSSAIKVIDFGSTTYER 274          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: AFC1_ARATH (Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana GN=AFC1 PE=2 SV=2)

HSP 1 Score: 372.859 bits (956), Expect = 1.456e-102
Identity = 188/289 (65.05%), Postives = 221/289 (76.47%), Query Frame = 3
Query:   81 AAIMEMERVTEFPFSNLDRRPRKRARLGWDV--PQVPKA------QVGLFCGQEV--GNVTSFAPPRAPSDHVTSSSLFVKGVARNGSPPWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDYKSSSHTPKDSSYFKRMPKSSAIKVIDFGSTTYE 917
            A I+E +R  EFP   +D+RPRKR RL WD   P +P        Q  L+ G E   G V +F  P          ++F  G+ R GSPPWR DDKDGHY+F +G+ LT RY+I SKMGEGTFGQVLEC+D + KE+VAIK++R I KYREAAMIEI+VLQ+L +HD GG+RCVQIRNWFDYRNHICIVFEKLG SLYDFLRKN+YRSFPIDLVRE+ RQLLE +A+MHDL +IHTDLKPEN+LLVSSEYIK+PDYK  S   KD SYFK +PKSSAIK+IDFGSTT+E
Sbjct:   14 AMILETQRNVEFPHRIVDKRPRKRPRLTWDAAPPLLPPPPPPTVFQPPLYYGPEFASGLVPNFVYP----------NMFYNGLPRQGSPPWRPDDKDGHYVFVVGDTLTPRYQILSKMGEGTFGQVLECFDNKNKEVVAIKVIRSINKYREAAMIEIDVLQRLTRHDVGGSRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAYMHDLRLIHTDLKPENILLVSSEYIKIPDYKFLSRPTKDGSYFKNLPKSSAIKLIDFGSTTFE 292          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: AFC3_ARATH (Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana GN=AFC3 PE=2 SV=2)

HSP 1 Score: 293.508 bits (750), Expect = 1.122e-78
Identity = 151/268 (56.34%), Postives = 194/268 (72.39%), Query Frame = 3
Query:  120 FSNLDR-RPRKRARLGWD-VPQVPKAQVGLFCGQEVGNVTSFAPPRAPSDHVTSSSLFVKGVARNG---SPPWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDYKSSSHTPKDSSYFKRMPKSSAIKVIDFGST 908
            F ++D+ R RKR R+ WD  P  P+A+  +                            +KG   +G   SPP R+DD+DGHY+F+L +NLT RYKI SKMGEGTFG+VLECWDR+ KE VAIKI+R IKKYR+AAMIEI+VLQ+L K DKG  RCVQ++NWFDYRNHICIVFEKLG SL+DFL++N Y +FP+ LVR+   QLLE +A+MH+L ++HTDLKPEN+LLVSSE +K+PD K S+    + ++F+ +PKSSAIK+IDFGST
Sbjct:    6 FESMDKERVRKRPRMTWDEAPAEPEAKRAV----------------------------IKGHGSDGRILSPPLRDDDRDGHYVFSLRDNLTPRYKILSKMGEGTFGRVLECWDRDTKEYVAIKIIRSIKKYRDAAMIEIDVLQKLVKSDKGRTRCVQMKNWFDYRNHICIVFEKLGPSLFDFLKRNKYSAFPLALVRDFGCQLLESVAYMHELQLVHTDLKPENILLVSSENVKLPDNKRSA---ANETHFRCLPKSSAIKLIDFGST 242          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: DOA_DROME (Serine/threonine-protein kinase Doa OS=Drosophila melanogaster GN=Doa PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 2.790e-45
Identity = 90/201 (44.78%), Postives = 135/201 (67.16%), Query Frame = 3
Query:  318 PWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGNR-CVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDYKSSSHTPKDSSYFKRMPKSSAIKVIDFGSTTYE 917
            P  +DD DGH ++  G+ L  RYKI + +GEGTFG+V++  D ER   +A+KI++ ++KYREAA +EI  L+++A+ D   +  CV++ +WFDY  H+CIVFE LG S++DFLR+NNY  +P+D VR +A QL   + F+HD  + HTDLKPEN+L V S+Y        +SH     +   R  K++ +++IDFGS T++
Sbjct:  457 PVIQDDADGHLIYHTGDILHHRYKIMATLGEGTFGRVVKVKDMERDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMIDWFDYHGHMCIVFEMLGLSVFDFLRENNYEPYPLDQVRHMAYQLCYSVKFLHDNRLTHTDLKPENILFVDSDY--------TSHYNHKINREVRRVKNTDVRLIDFGSATFD 649          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: CLK2_HUMAN (Dual specificity protein kinase CLK2 OS=Homo sapiens GN=CLK2 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.808e-44
Identity = 91/199 (45.73%), Postives = 135/199 (67.84%), Query Frame = 3
Query:  327 EDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERK-EMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGG-NRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDYKSSSHTPKDSSYFKRMPKSSAIKVIDFGSTTYE 917
            EDD +GH ++ +G+ L  RY+I S +GEGTFG+V++C D  R    VA+KI++ ++KY+EAA +EI VL+++ + D    N CVQ+ +WFDY  H+CI FE LG S +DFL+ NNY  +PI  VR +A QL + + F+HD  + HTDLKPEN+L V+S      DY+ + +  K     +R  KS+A++V+DFGS T++
Sbjct:  144 EDDAEGHLIYHVGDWLQERYEIVSTLGEGTFGRVVQCVDHRRGGARVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNS------DYELTYNLEKKRD--ERSVKSTAVRVVDFGSATFD 334          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: LKH1_SCHPO (Dual specificity protein kinase lkh1 OS=Schizosaccharomyces pombe GN=lkh1 PE=1 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 5.262e-44
Identity = 89/199 (44.72%), Postives = 132/199 (66.33%), Query Frame = 3
Query:  330 DDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGG-NRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVS--SEYIKVPDYKSSSHTPKDSSYFKRMPKSSAIKVIDFGSTTYE 917
            DD DGHY         +RY +   +G GTFG+V++C+D+      AIK+ R I KYREA++IE+ VLQ +A  D    N+C+Q+R++FDYR HICIV +  G S++DFL+ NNY  FP+  ++ +++QL + +AF+H L ++HTDLKPENVLLVS  S  I++P Y+         +Y +++  S  I++IDFGS T+E
Sbjct:  344 DDDDGHYKVVPNSKFANRYTVVRLLGHGTFGKVIQCYDQSTGRHCAIKVTRAIPKYREASLIELRVLQTIAHSDPTNENKCIQLRDYFDYRKHICIVTDLFGWSVFDFLKNNNYIPFPLKHIQMLSQQLFKSVAFLHSLGLVHTDLKPENVLLVSNASRTIRLP-YR---------NYSQKVLNSCEIRLIDFGSATFE 532          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: CLK2_MOUSE (Dual specificity protein kinase CLK2 OS=Mus musculus GN=Clk2 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.531e-43
Identity = 90/199 (45.23%), Postives = 134/199 (67.34%), Query Frame = 3
Query:  327 EDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERK-EMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGG-NRCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDYKSSSHTPKDSSYFKRMPKSSAIKVIDFGSTTYE 917
            EDD +GH ++ +G+ L  RY+I S +GEGT G+V++C D  R    VA+KI++ ++KY+EAA +EI VL+++ + D    N CVQ+ +WFDY  H+CI FE LG S +DFL+ NNY  +PI  VR +A QL + + F+HD  + HTDLKPEN+L V+S      DY+ + +  K     +R  KS+A++V+DFGS T++
Sbjct:  143 EDDAEGHLIYHVGDWLQERYEIVSTLGEGTSGRVVQCVDHRRGGTRVALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLSTFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNS------DYELTYNLEKKRD--ERSVKSTAVRVVDFGSATFD 333          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: CLK4_HUMAN (Dual specificity protein kinase CLK4 OS=Homo sapiens GN=CLK4 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.923e-43
Identity = 98/228 (42.98%), Postives = 141/228 (61.84%), Query Frame = 3
Query:  240 APPRAPSDHVTSSSLFVKGVARNGSPPWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEM-VAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDYKSSSHTPKDSSYFKRMPKSSAIKVIDFGSTTYE 917
            +P R  + H +S     K   R  S    EDD++GH +   G+ L +RY+I   +GEG FG+V+EC D     M VA+KIV+ + +YREAA  EI+VL+ L   D     RCVQ+  WFD+  H+CIVFE LG S YDF+++N++  F ID +R++A Q+ + I F+H   + HTDLKPEN+L V S+Y+     K +S   +D    +R  K++ IKV+DFGS TY+
Sbjct:  112 SPKRKRNRHCSSHQSRSKSHRRKRSRSI-EDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGMHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLSTYDFIKENSFLPFQIDHIRQMAYQICQSINFLHHNKLTHTDLKPENILFVKSDYV----VKYNSKMKRD----ERTLKNTDIKVVDFGSATYD 330          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: CLK4_MOUSE (Dual specificity protein kinase CLK4 OS=Mus musculus GN=Clk4 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.771e-42
Identity = 90/199 (45.23%), Postives = 131/199 (65.83%), Query Frame = 3
Query:  327 EDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEM-VAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDYKSSSHTPKDSSYFKRMPKSSAIKVIDFGSTTYE 917
            EDD++GH +   G+ L +RY+I   +GEG FG+V+EC D     + VA+KIV+ + +YREAA  EI+VL+ L   D     RCVQ+  WFD+  H+CIVFE LG S YDF+++N++  F ID +R++A Q+ + I F+H   + HTDLKPEN+L V S+Y+     K +S   +D    +R  K++ IKV+DFGS TY+
Sbjct:  140 EDDEEGHLICQSGDVLRARYEIVDTLGEGAFGKVVECIDHGMDGLHVAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLSTYDFIKENSFLPFQIDHIRQMAYQICQSINFLHHNKLTHTDLKPENILFVKSDYV----VKYNSKMKRD----ERTLKNTDIKVVDFGSATYD 330          
BLAST of FC877830 vs. ExPASy Swiss-Prot
Match: CLK3_RAT (Dual specificity protein kinase CLK3 OS=Rattus norvegicus GN=Clk3 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 6.432e-42
Identity = 84/199 (42.21%), Postives = 132/199 (66.33%), Query Frame = 3
Query:  327 EDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRER-KEMVAIKIVRGIKKYREAAMIEIEVLQQLAKHDKGGN-RCVQIRNWFDYRNHICIVFEKLGSSLYDFLRKNNYRSFPIDLVREIARQLLECIAFMHDLCMIHTDLKPENVLLVSSEYIKVPDYKSSSHTPKDSSYFKRMPKSSAIKVIDFGSTTYE 917
            EDDK+GH +  +G+ L  RY+I   +GEGTFG+V+EC D  R K  VA+KI+R + KYREAA +EI VL+++ + DK     CV + +WF++  H+CI FE LG + ++FL++NN++ +P+  VR +A QL   + F+H+  + HTDLKPEN+L V+SE+  + +   S          ++  K+++I+V DFGS T++
Sbjct:  137 EDDKEGHLVCRIGDWLQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCE--------EKSVKNTSIRVADFGSATFD 327          
The following BLAST results are available for this feature:
BLAST of FC877830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
AFC2_ARATH1.949e-13182.73Serine/threonine-protein kinase AFC2 OS=Arabidopsi... [more]
AFC1_ARATH1.456e-10265.05Serine/threonine-protein kinase AFC1 OS=Arabidopsi... [more]
AFC3_ARATH1.122e-7856.34Serine/threonine-protein kinase AFC3 OS=Arabidopsi... [more]
DOA_DROME2.790e-4544.78Serine/threonine-protein kinase Doa OS=Drosophila ... [more]
CLK2_HUMAN1.808e-4445.73Dual specificity protein kinase CLK2 OS=Homo sapie... [more]
LKH1_SCHPO5.262e-4444.72Dual specificity protein kinase lkh1 OS=Schizosacc... [more]
CLK2_MOUSE1.531e-4345.23Dual specificity protein kinase CLK2 OS=Mus muscul... [more]
CLK4_HUMAN9.923e-4342.98Dual specificity protein kinase CLK4 OS=Homo sapie... [more]
CLK4_MOUSE3.771e-4245.23Dual specificity protein kinase CLK4 OS=Mus muscul... [more]
CLK3_RAT6.432e-4242.21Dual specificity protein kinase CLK3 OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BF04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877830 ID=FC877830; Name=FC877830; organism=Citrus clementina; type=EST; length=920bp
AAAATTCATATCTTCGTTATTTTATTCGTTCGTTTCAATCGCATCAAGAT
CTCGATCTCTCTCTTATTTCCTCGCCGTGAGCTGCGATCATGGAGATGGA
GCGCGTGACGGAGTTTCCTTTTTCGAATCTGGATCGGCGTCCTCGTAAGC
GAGCGCGTTTGGGCTGGGACGTGCCTCAGGTACCGAAGGCTCAGGTAGGA
TTATTTTGTGGACAAGAGGTTGGGAATGTAACAAGCTTTGCACCTCCAAG
AGCTCCCTCAGACCATGTCACTAGTTCTTCTCTATTTGTAAAGGGAGTGG
CTCGAAATGGTTCTCCCCCATGGCGTGAGGATGACAAAGATGGCCATTAT
ATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATTCACAGCAA
AATGGGTGAAGGAACCTTCGGTCAGGTTTTGGAATGCTGGGATCGTGAGA
GGAAAGAAATGGTAGCCATTAAAATTGTTCGTGGGATCAAGAAATATCGT
GAGGCTGCTATGATAGAAATTGAAGTACTTCAACAACTTGCAAAACATGA
TAAAGGTGGCAACCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTA
ACCATATCTGTATTGTGTTTGAGAAGCTTGGATCTAGCTTATACGATTTT
CTACGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGAT
TGCCAGACAACTGTTGGAATGTATAGCATTTATGCATGATCTGTGTATGA
TACATACTGACTTAAAGCCTGAGAATGTTCTACTTGTTTCTTCTGAGTAT
ATTAAGGTTCCTGACTACAAGAGTTCTTCGCACACACCAAAAGATTCTTC
CTACTTTAAAAGAATGCCAAAGTCAAGTGCTATTAAGGTGATTGATTTTG
GCAGCACAACTTATGAGCGC
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