FC877831

Overview
NameFC877831
Unique NameFC877831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length894
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12380 contig Ccv1_Contig12380:129..1023. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877831 vs. ExPASy Swiss-Prot
Match: MAON_SOLTU (NAD-dependent malic enzyme 59 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 412.92 bits (1060), Expect = 7.149e-118
Identity = 203/247 (82.19%), Postives = 211/247 (85.43%), Query Frame = 2
Query:  107 MWNXXXXXXXXXXXXXXFSTAIPGPCMVHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGED 847
            MW                STAI  PC+VHKRG DILHDPWFNKDTGFP+TE             VISFEQQY RFMESFRSLEKNTEGQP+ VVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMI+NWP+ QVDMIVLTDGSRILGLGDLGVQGIGIPIGKLD+YVAAAGINPQR+LPVMLDVGTNNQKLLED LYLGLRQPRLEGE+
Sbjct:    1 MWRVARSAASTFRRTRRLSTAISAPCIVHKRGADILHDPWFNKDTGFPMTERDRLGLRGLLPPRVISFEQQYDRFMESFRSLEKNTEGQPDSVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIFNWPSTQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPQRVLPVMLDVGTNNQKLLEDPLYLGLRQPRLEGEE 247          

HSP 2 Score: 33.4982 bits (75), Expect = 7.149e-118
Identity = 14/16 (87.50%), Postives = 15/16 (93.75%), Query Frame = 1
Query:  847 YLSIVDEFMGAVHARW 894
            YLSIVDEF+ AVHARW
Sbjct:  248 YLSIVDEFVEAVHARW 263          
BLAST of FC877831 vs. ExPASy Swiss-Prot
Match: MAOM_SOLTU (NAD-dependent malic enzyme 62 kDa isoform, mitochondrial OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 2.885e-90
Identity = 156/223 (69.96%), Postives = 181/223 (81.17%), Query Frame = 2
Query:  179 PCMVHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGED 847
            P +VHKR  DILHDPWFNK T F  TE             V+SFEQQ ARFM   + LE      P+    LAKWRILNRLHDRNETLYY+VL++NI+++API+YTPTVGLVCQ YSGLFRRPRGMYFSA+D+GEMMSM+YNWPA QVDMIV+TDGSRILGLGDLG+QGIGI IGKLD+YVAAAGINPQR+LPVM+DVGT+N+ LL+D LYLGL+  RL+GE+
Sbjct:   42 PTIVHKRSLDILHDPWFNKGTAFSFTERDRLHIRGLLPPNVMSFEQQIARFMADLKRLEVQARDGPSDPYVLAKWRILNRLHDRNETLYYKVLMENIEEYAPIVYTPTVGLVCQKYSGLFRRPRGMYFSAEDRGEMMSMVYNWPADQVDMIVVTDGSRILGLGDLGIQGIGIAIGKLDLYVAAAGINPQRVLPVMIDVGTDNENLLKDPLYLGLQDHRLDGEE 264          

HSP 2 Score: 26.9498 bits (58), Expect = 2.885e-90
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  847 YLSIVDEFMGAVHARW 894
            Y+ ++DEFM AV  RW
Sbjct:  265 YIEVIDEFMEAVFTRW 280          
BLAST of FC877831 vs. ExPASy Swiss-Prot
Match: MAOM_AMAHP (NAD-dependent malic enzyme 65 kDa isoform, mitochondrial OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 1.095e-83
Identity = 146/230 (63.48%), Postives = 183/230 (79.57%), Query Frame = 2
Query:  185 MVHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEDIYXLLMNSW 874
            +V+KR  DIL DPWFNK T F +TE             V++ EQQ  RF    R LE  T+  P+    LAKWRILNRLHDRNET++++VLI+NI+++API+ TPTVGLVCQ +SGL+RRPRGMYFS+ D+GEMMSM+YNWPA+QVDMIV+TDGSRILGLGDLGV GIG+ IGKLD+YVAAAGINPQR+LPVM+DVGTNN+ LL++ LYLGL++ RL+GE+ Y  +M+ +
Sbjct:   41 IVNKRSLDILQDPWFNKGTAFSMTERDRLDLRGLLPPNVMTTEQQIERFTADLRVLELTTKDGPSDTYDLAKWRILNRLHDRNETMFFKVLIENIEEYAPIVSTPTVGLVCQKFSGLYRRPRGMYFSSDDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVHGIGVAIGKLDLYVAAAGINPQRVLPVMIDVGTNNEDLLKNPLYLGLQKKRLDGEE-YLAVMDEF 269          

HSP 2 Score: 27.335 bits (59), Expect = 1.095e-83
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  847 YLSIVDEFMGAVHARW 894
            YL+++DEFM AV  RW
Sbjct:  262 YLAVMDEFMEAVFTRW 277          
BLAST of FC877831 vs. ExPASy Swiss-Prot
Match: MAOH_NEOFR (Malic enzyme, hydrogenosomal OS=Neocallimastix frontalis PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.789e-53
Identity = 106/220 (48.18%), Postives = 142/220 (64.55%), Query Frame = 2
Query:  194 KRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEDIY 853
            K G DIL+DP  NK + F   E               S E QY R   +   L+K ++        L K+  LN L +RNETLYY+++++N  + APIIYTP VG  CQ +  +F + RGMYFS  D+G+M ++  NWP   VD+IV+TDGSRILGLGDLG  G+ IPIGKL +YV   GINP+ +LP++LDVGTNN++LL D LYLG++ PRL+GE+ +
Sbjct:   45 KTGLDILNDPKLNKGSAFTADEKDRLGIRGLVPPRPQSLEAQYKRCKTN---LDKISD-------PLEKFIYLNHLQNRNETLYYKMILENFVELAPIIYTPVVGEACQKFHKIFTQTRGMYFSTADRGQMSAVAANWPYDDVDVIVVTDGSRILGLGDLGAGGMQIPIGKLTLYVCGGGINPRNVLPIVLDVGTNNKELLNDPLYLGMQHPRLQGEEFH 254          
BLAST of FC877831 vs. ExPASy Swiss-Prot
Match: MAON_MOUSE (NADP-dependent malic enzyme, mitochondrial OS=Mus musculus GN=Me3 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.594e-52
Identity = 103/230 (44.78%), Postives = 139/230 (60.43%), Query Frame = 2
Query:  173 PGPCMVHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEDIYXLL 862
            P P  + KRG D+  +P  NK   F L E              +S + Q  R M  +           N+   L K+ IL    DRNE L+YRVL  +++ F PI+YTPTVGL CQ+Y   FRRPRG++ +  DKG + +M+ +WP   +  +V+TDG RILGLGDLG  G+GIP+GKL +Y A  G+NPQ+ LPV+LDVGTNN++LL D LY+GL+  R+ GE+   LL
Sbjct:   41 PRPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYE----------NQQSDLDKYIILMTHQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHIATMLNSWPEDNIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPVLLDVGTNNEELLRDPLYIGLKHQRVRGEEYDDLL 260          
BLAST of FC877831 vs. ExPASy Swiss-Prot
Match: MAON_HUMAN (NADP-dependent malic enzyme, mitochondrial OS=Homo sapiens GN=ME3 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 4.274e-51
Identity = 103/233 (44.21%), Postives = 140/233 (60.09%), Query Frame = 2
Query:  173 PGPCM---VHKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEDIYXLL 862
            PGP     + KRG D+  +P  NK   F L E              +S + Q  R M  +   + +          L K+ IL  L DRNE L+YRVL  +++ F PI+YTPTVGL CQ+Y   FRRPRG++ +  DKG + +M+ +WP   +  +V+TDG RILGLGDLG  G+GIP+GKL +Y A  G+NPQ+ LPV+LDVGTNN++LL D LY+GL+  R+ G+    LL
Sbjct:   38 PGPARPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSD----------LDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLATMLNSWPEDNIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPVLLDVGTNNEELLRDPLYIGLKHQRVHGKAYDDLL 260          
BLAST of FC877831 vs. ExPASy Swiss-Prot
Match: MAOX_PHAVU (NADP-dependent malic enzyme OS=Phaseolus vulgaris GN=ME1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.582e-51
Identity = 97/216 (44.91%), Postives = 133/216 (61.57%), Query Frame = 2
Query:  200 GTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGED 847
            G  +L DP +NK   F   E             V + E Q  R M + R  E          V L ++  L  L +RNE L+Y++LIDN+ +  P++YTPTVG  CQ Y  +FRRP+G+Y S K+KG+++ ++ NWP + + +IV+TDG RILGLGDLG QG+GIP+GKL +Y A  G+ P   LPV +DVGTNN+KLL D  Y+GLRQ R  G++
Sbjct:   50 GCSLLRDPRYNKGLAFTEGERDAHYLRGLLPPSVFNQELQEKRLMHNLRQYE----------VPLHRYMALMDLQERNERLFYKLLIDNVAELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPVTIDVGTNNEKLLNDEFYIGLRQRRATGQE 255          
BLAST of FC877831 vs. ExPASy Swiss-Prot
Match: MAOC_FLAPR (NADP-dependent malic enzyme, chloroplastic OS=Flaveria pringlei GN=MODA PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.521e-51
Identity = 97/225 (43.11%), Postives = 140/225 (62.22%), Query Frame = 2
Query:  200 GTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEDIYXLLMNSW 874
            G  +L DP  NK   F   E             V++ + Q  + M + R  E          V L +++ +  L +RNE L+Y++LI+NI++  PI+YTPTVG  CQ Y  +F+ P+G+Y S KDKG+++ ++ NWP +++ +IV+TDG RILGLGDLG QG+GIP+GKL +Y A  GI P   LP+ +DVGTNN+K+L D  Y+GLRQ R  G++ Y  LMN +
Sbjct:  108 GYSLLRDPHHNKGLAFTEKERDAHYLRGLLPPVVVNHDLQVKKMMHNIRQYE----------VPLQRYQAMMDLQERNERLFYKLLIENIEELLPIVYTPTVGEACQKYGTIFKNPQGLYISLKDKGKVLEILKNWPQKKIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGIRPSACLPITIDVGTNNEKMLNDEFYIGLRQRRASGKE-YAELMNEF 321          
BLAST of FC877831 vs. ExPASy Swiss-Prot
Match: MAOX_MOUSE (NADP-dependent malic enzyme OS=Mus musculus GN=Me1 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.243e-50
Identity = 100/219 (45.66%), Postives = 136/219 (62.10%), Query Frame = 2
Query:  191 HKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGED 847
            H+RG  +  DP  NKD  F L E             +IS E Q  R +++F  L  + +          ++ +L  L DRNE L+Y VL+ +++ F PI+YTPTVGL CQ YS  FR+PRG++ S  DKG + S++  WP   V  IV+TDG RILGLGDLG  G+GIP+GKL +Y A  G+NPQ+ LP+ LDVGT N++LL+D LY+GLR  R+ G +
Sbjct:   12 HQRGYLLTRDPHLNKDLAFTLEERQQLNIHGLLPPCIISQELQVLRIIKNFERLNSDFD----------RYLLLMDLQDRNEKLFYSVLMSDVEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDKGHIASVLNAWPEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVNPQQCLPITLDVGTENEELLKDPLYIGLRHRRVRGPE 220          
BLAST of FC877831 vs. ExPASy Swiss-Prot
Match: MAOX_RAT (NADP-dependent malic enzyme OS=Rattus norvegicus GN=Me1 PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.624e-50
Identity = 99/219 (45.21%), Postives = 136/219 (62.10%), Query Frame = 2
Query:  191 HKRGTDILHDPWFNKDTGFPLTEXXXXXXXXXXXXXVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGED 847
            H+RG  +  DP  NKD  F L E             +++ E Q  R +++F  L  + +          ++ +L  L DRNE L+Y VL+ N++ F PI+YTPTVGL CQ YS  FR+PRG++ S  DKG + S++  WP   V  IV+TDG RILGLGDLG  G+GIP+GKL +Y A  G+NPQ+ LP+ LDVGT N++LL+D LY+GLR  R+ G +
Sbjct:   12 HQRGYLLTRDPHLNKDLAFTLEERQQLKIHGLLPPCIVNQEIQVLRVIKNFERLNSDFD----------RYLLLMDLQDRNEKLFYSVLMSNVEKFMPIVYTPTVGLACQQYSLAFRKPRGLFISIHDKGHIASVLNAWPEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVNPQQCLPITLDVGTENEELLKDPLYIGLRHRRVRGPE 220          
The following BLAST results are available for this feature:
BLAST of FC877831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
MAON_SOLTU7.149e-11882.19NAD-dependent malic enzyme 59 kDa isoform, mitocho... [more]
MAOM_SOLTU2.885e-9069.96NAD-dependent malic enzyme 62 kDa isoform, mitocho... [more]
MAOM_AMAHP1.095e-8363.48NAD-dependent malic enzyme 65 kDa isoform, mitocho... [more]
MAOH_NEOFR7.789e-5348.18Malic enzyme, hydrogenosomal OS=Neocallimastix fro... [more]
MAON_MOUSE6.594e-5244.78NADP-dependent malic enzyme, mitochondrial OS=Mus ... [more]
MAON_HUMAN4.274e-5144.21NADP-dependent malic enzyme, mitochondrial OS=Homo... [more]
MAOX_PHAVU5.582e-5144.91NADP-dependent malic enzyme OS=Phaseolus vulgaris ... [more]
MAOC_FLAPR9.521e-5143.11NADP-dependent malic enzyme, chloroplastic OS=Flav... [more]
MAOX_MOUSE1.243e-5045.66NADP-dependent malic enzyme OS=Mus musculus GN=Me1... [more]
MAOX_RAT1.624e-5045.21NADP-dependent malic enzyme OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877831 ID=FC877831; Name=FC877831; organism=Citrus clementina; type=EST; length=894bp
CAAAATCTAAAACGATGCAATTAAAGTGGACTTTATAGTTTGTGTTATTG
TTTTAGATCTTTTCCGGAAAGCCTTTTTGTTCTTTGGCTTAGATCTTGAC
GCGGAAATGTGGAATCTTGCTCGAGTTGCCGCGTCCGTATTAAGCCGATC
GAGGCGATTCTCGACGGCGATTCCTGGTCCCTGTATGGTTCACAAACGCG
GCACTGATATTCTTCATGATCCCTGGTTCAACAAGGATACTGGCTTTCCT
TTGACTGAAAGAGACCGACTGGGGCTCCGTGGCCTCCTCCCACCCCGCGT
GATATCATTCGAGCAGCAATATGCTCGTTTCATGGAATCATTCCGATCAT
TAGAGAAAAATACTGAGGGTCAACCAAATAAAGTTGTATCATTAGCAAAG
TGGAGGATCTTGAACAGACTGCATGACAGGAATGAAACATTATACTACAG
AGTCCTGATTGATAACATCAAAGATTTTGCTCCAATTATATACACTCCAA
CTGTTGGATTGGTTTGTCAGAATTATTCAGGTTTGTTTAGACGTCCCCGT
GGAATGTATTTCAGTGCAAAGGATAAGGGGGAGATGATGTCTATGATCTA
CAATTGGCCTGCTCAACAGGTAGATATGATAGTCCTAACGGATGGAAGTC
GTATTCTTGGCTTAGGCGACCTTGGAGTTCAGGGAATTGGAATTCCTATT
GGAAAGCTGGATGTGTATGTGGCTGCTGCAGGCATCAATCCACAGAGAAT
TCTCCCGGTTATGCTTGATGTTGGCACTAACAATCAAAAGCTGCTTGAAG
ACCGTCTATATTTGGGACTCCGACAACCTAGGCTAGAAGGAGAAGATATC
TATCNATTGTTGATGAATTCATGGGAGCTGTTCACGCACGTTGG
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