FC877833

Overview
NameFC877833
Unique NameFC877833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877833_ssr14 microsatellite FC877833_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10465 contig Ccv1_Contig10465:1..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: BUB3_HUMAN (Mitotic checkpoint protein BUB3 OS=Homo sapiens GN=BUB3 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.128e-65
Identity = 120/222 (54.05%), Postives = 157/222 (70.72%), Query Frame = 2
Query:  182 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            +L  PP DGIS+++FS N S  LLVSSWD SVRLYD  AN +R ++ H G VLDC F+D +  +S   DH ++    +  +E+++G HDAP+RC+EY      ++TGSWD+++K WDPR          GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM   +QRRESSLKYQTRC+R +PN  GY LSS+EGRVA+E+ D S   Q KKYAFKCH
Sbjct:    8 KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCH 224          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: BUB3_BOVIN (Mitotic checkpoint protein BUB3 OS=Bos taurus GN=BUB3 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.128e-65
Identity = 120/222 (54.05%), Postives = 157/222 (70.72%), Query Frame = 2
Query:  182 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            +L  PP DGIS+++FS N S  LLVSSWD SVRLYD  AN +R ++ H G VLDC F+D +  +S   DH ++    +  +E+++G HDAP+RC+EY      ++TGSWD+++K WDPR          GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM   +QRRESSLKYQTRC+R +PN  GY LSS+EGRVA+E+ D S   Q KKYAFKCH
Sbjct:    8 KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCH 224          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: BUB3_MOUSE (Mitotic checkpoint protein BUB3 OS=Mus musculus GN=Bub3 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.801e-64
Identity = 119/222 (53.60%), Postives = 156/222 (70.27%), Query Frame = 2
Query:  182 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            +L  PP DGIS+++FS N S  LLVSSWD SVRLYD  AN +R ++ H G VLDC F+D +  +S   DH ++    +  +E+++G HDAP+RC+EY      ++TGSWD+++K WDPR          GT+ QPE+VY+LS+ G+RL+V TAGR V V+DL NM   +QRRESSLKYQTRC+R +PN  GY LSS+EGRVA+E+ D S   Q KKYAFKCH
Sbjct:    8 KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTVKLWDPRTPCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLWNMGYVQQRRESSLKYQTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCH 224          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: BUB3_PONAB (Mitotic checkpoint protein BUB3 OS=Pongo abelii GN=BUB3 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.940e-64
Identity = 119/222 (53.60%), Postives = 155/222 (69.82%), Query Frame = 2
Query:  182 ELGNPPSDGISNLRFS-NHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            +L  PP DGIS+++FS N S  LLVSSWD SVRLYD  AN +R ++ H G VLDC F+D +  +S   DH ++    +  +E+++G HDAP+RC+EY      + TGSWD+++K WDPR          GT+ QPE+VY+LS+ G+RL+V TAGR V V+DLRNM   +QRRESSLKYQTRC+R + N  GY LSS+EGRVA+E+ D S   Q KKYAFKCH
Sbjct:    8 KLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVLDCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMATGSWDQTVKLWDPRTPCN-----AGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFLNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCH 224          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: BUB3_DICDI (Mitotic checkpoint protein bub3 OS=Dictyostelium discoideum GN=bub3 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.298e-50
Identity = 100/229 (43.67%), Postives = 145/229 (63.32%), Query Frame = 2
Query:  164 PPTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHGGPVLDCCFHDDSSGFSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSL--VGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            P +S  EL  PPSDGIS++ F  +S +LLV+SWD +VR YD   NV + ++ H GPV+D CF + +  FS     +V+      G E  +G H+  VR + Y+    Q+ TG WD+ LK WD R     ++  +  +    +++++ +  + N LV+ TA ++V +YD R M    Q+RESS+KYQTRC+R + +G GYAL+SVEGR+AME+FD S A Q+KKYAFKCH
Sbjct:    5 PTSSFYELRLPPSDGISSVNFCPNSVNLLVTSWDSTVRCYDTQNNVQKWQYNHKGPVMDGCFPEKNKVFSGDVFGSVKHYDPVAGVEKEVGSHEDGVRSVVYNSDTQQLFTGGWDQQLKLWDIRS----DKMEISNHDLQSKIFTMDVSPISNMLVIGTADKYVTIYDTRQMETHLQKRESSIKYQTRCIRTFTDGKGYALASVEGRIAMEYFDPSPAVQSKKYAFKCH 229          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAE1_SCHPO (Poly(A)+ RNA export protein OS=Schizosaccharomyces pombe GN=rae1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.328e-34
Identity = 86/228 (37.72%), Postives = 126/228 (55.26%), Query Frame = 2
Query:  182 ELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDASA---NVLRGEFMHGGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ---VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            E+  PP D IS+L FS  +++L  SSWD  VR+Y+  A   ++ +  + H GPVL   +  D +   S S D + +      G+   +  HD  VRC+ +  A G    + TGSWDK+LK WD R     + T + T   PERVY++  V   L VATA R++ V +L   ++  +   S LK+QTR + C+  G GYA+ SVEGR A++  D   ASQ   ++F+CH
Sbjct:   24 EVAQPPEDSISDLAFSPQAEYLAASSWDSKVRIYEVQATGQSIGKALYEHQGPVLSVNWSRDGTKVASGSVDKSAKVFDIQTGQNQQVAAHDDAVRCVRFVEAMGTSPILATGSWDKTLKYWDLR-----QSTPIATVSLPERVYAMDCVHPLLTVATAERNICVINLSEPTKIFKLAMSPLKFQTRSLACFIKGDGYAIGSVEGRCAIQNIDEKNASQ--NFSFRCH 244          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAE1L_ARATH (Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 9.024e-32
Identity = 80/234 (34.19%), Postives = 126/234 (53.85%), Query Frame = 2
Query:  167 PTSGRELGNPPSDGISNLRFSNHSDHLLVSSWDKSVRLYDAS------ANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRL-VFSHGKEDILGKHDAPVRCIEYSYAAGQVITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            P    E+   P+D IS+L FS  +D L+ +SWD  VR ++ S      A+  +    H  PVL   + DD +  FS   D   +   + S G+   +  H+ P+  + +      + TGSWDK+LK WD R     ++  V T   P++ Y+LS+    +VV TA R++ V++L+N     +R +S LKYQTRCV  +P+  G+ + S+EGRV +   D  ++ Q+K + FKCH
Sbjct:   14 PNKSYEVTPSPADSISSLSFSPRADILVATSWDNQVRCWEISRSGASLASAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGSWDKTLKYWDTR-----QQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVFNLQNPQTEFKRIQSPLKYQTRCVTAFPDQQGFLVGSIEGRVGVHHLD--DSQQSKNFTFKCH 240          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAE1L_XENTR (mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.625e-31
Identity = 87/239 (36.40%), Postives = 127/239 (53.14%), Query Frame = 2
Query:  167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLYDASAN---VLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            P    E+ +PP D IS L FS  +   + L+  SW   VR ++   N   + + + MH GPVLD C+ DD S  F+AS D T +    +  +   + +HDAP++ + +  A     ++TGSWDKSLK WD R  +      + T   PER Y   +V    VVATA R + VY L N     +R +S LK+Q RCV  + +     TG+AL S+EGRVA+ + +    ++   + FKCH
Sbjct:   28 PMKDIEVTSPPDDSISCLSFSPPTLPGNFLIAGSWANDVRCWEVQDNGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQSIQIAQHDAPIKTVHWVKAPNYSCIMTGSWDKSLKFWDTRSPNP-----LLTLQLPERCYCADVVYPMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: GLE2_YEAST (Nucleoporin GLE2 OS=Saccharomyces cerevisiae GN=GLE2 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.429e-31
Identity = 81/229 (35.37%), Postives = 122/229 (53.28%), Query Frame = 2
Query:  185 LGNPPSDGISNLRFSNHSDHLL-VSSWDKSVRLYDASANVLRGEFMH--GGPVLDCCFHDDSSGF-SASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ----VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKK-YAFKCH 844
            + +P  D IS++ FS   D +   SSWD  VR++D    V +G   H    PVL   + +D +   S   D+ ++    + G+   +G H AP++ + +          ++TGSWDK++K WD R     +   V T   PERVYS+    + LVVATA RH+ + +L N +   +   S LK+QTRCV CY    GYA+ SVEGR ++ + D  +  Q K  ++FKCH
Sbjct:   31 INSPAEDSISDIAFSPQQDFMFSASSWDGKVRIWDVQNGVPQGRAQHESSSPVLCTRWSNDGTKVASGGCDNALKLYDIASGQTQQIGMHSAPIKVLRFVQCGPSNTECIVTGSWDKTIKYWDMR-----QPQPVSTVMMPERVYSMDNKQSLLVVATAERHIAIINLANPTTIFKATTSPLKWQTRCVACYNEADGYAIGSVEGRCSIRYID--DGMQKKSGFSFKCH 252          
BLAST of FC877833 vs. ExPASy Swiss-Prot
Match: RAE1L_MACFA (mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.478e-31
Identity = 88/239 (36.82%), Postives = 125/239 (52.30%), Query Frame = 2
Query:  167 PTSGRELGNPPSDGISNLRFSNHS---DHLLVSSWDKSVRLY---DASANVLRGEFMHGGPVLDCCFHDDSSG-FSASADHTVRRLVFSHGKEDILGKHDAPVRCIEYSYAAGQ--VITGSWDKSLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPN----GTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCH 844
            P    E+ + P D I  L FS  +   + L+  SW   VR +   D+   + + + MH GPVLD C+ DD S  F+AS D T +    S  +   + +HDAPV+ I +  A     V+TGSWDK+LK WD R ++            PER Y   ++    VVATAGR + VY L N     +R ES LK+Q RCV  + +     TG+AL S+EGRVA+ + +    ++   + FKCH
Sbjct:   28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMM-----VLQLPERYYCADVIYPMAVVATAGRGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK-DNFTFKCH 260          
The following BLAST results are available for this feature:
BLAST of FC877833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
BUB3_HUMAN2.128e-6554.05Mitotic checkpoint protein BUB3 OS=Homo sapiens GN... [more]
BUB3_BOVIN2.128e-6554.05Mitotic checkpoint protein BUB3 OS=Bos taurus GN=B... [more]
BUB3_MOUSE1.801e-6453.60Mitotic checkpoint protein BUB3 OS=Mus musculus GN... [more]
BUB3_PONAB8.940e-6453.60Mitotic checkpoint protein BUB3 OS=Pongo abelii GN... [more]
BUB3_DICDI3.298e-5043.67Mitotic checkpoint protein bub3 OS=Dictyostelium d... [more]
RAE1_SCHPO4.328e-3437.72Poly(A)+ RNA export protein OS=Schizosaccharomyces... [more]
RAE1L_ARATH9.024e-3234.19Rae1-like protein At1g80670 OS=Arabidopsis thalian... [more]
RAE1L_XENTR2.625e-3136.40mRNA export factor OS=Xenopus tropicalis GN=rae1 P... [more]
GLE2_YEAST3.429e-3135.37Nucleoporin GLE2 OS=Saccharomyces cerevisiae GN=GL... [more]
RAE1L_MACFA4.478e-3136.82mRNA export factor OS=Macaca fascicularis GN=RAE1 ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DB07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877833 ID=FC877833; Name=FC877833; organism=Citrus clementina; type=EST; length=844bp
CCACCTAGGAGTGGCAGCAGCAGCAGCGGCCACTCGTTCAATTTTCAAAC
CTCCTTTCCCCCCTCAGCCCCTCTCTCTCGCTTAAATCACTAACAGAACA
CGTCCCTAAACTCCTCTTCTCAATTCCCCCCCAACCAATCACGGCATGAC
AGCTGTCCACCCGCCTCCTACCTCCGGTCGCGAGCTCGGGAACCCTCCAA
GCGACGGGATCTCGAACCTTCGATTCTCCAACCACAGCGATCACCTCCTC
GTCTCCTCTTGGGATAAGAGCGTGAGATTGTACGATGCGAGCGCGAATGT
GCTCCGAGGAGAGTTCATGCACGGTGGGCCCGTGCTCGATTGCTGCTTCC
ACGACGATTCTTCCGGTTTCAGTGCCAGCGCCGATCACACTGTTAGACGG
CTAGTATTCAGCCATGGAAAAGAGGATATCCTAGGGAAACATGATGCACC
TGTGCGTTGTATTGAGTACTCGTATGCAGCAGGGCAAGTGATTACTGGTA
GTTGGGACAAATCTCTCAAGTGTTGGGATCCTAGAGGAGCAAGTGGACAG
GAGCGAACCCTTGTTGGAACATACCCTCAGCCTGAGCGTGTCTACTCCCT
ATCTCTTGTTGGAAACCGTCTGGTGGTGGCCACTGCAGGAAGACATGTAA
ATGTCTATGATTTACGAAACATGTCTCAGCCCGAGCAAAGGAGAGAATCT
TCTTTAAAGTATCAGACTAGATGTGTGCGTTGTTATCCAAATGGAACCGG
ATATGCTCTGAGTTCTGTTGAAGGACGGGTTGCTATGGAGTTTTTTGATC
TCTCAGAAGCTAGTCAAGCCAAAAAATATGCATTTAAGTGCCAC
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