FC877848

Overview
NameFC877848
Unique NameFC877848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12631 contig Ccv1_Contig12631:336..1210. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877848 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.000e-21
Identity = 79/253 (31.23%), Postives = 109/253 (43.08%), Query Frame = 2
Query:   50 LPLLFYVRGGGFCGQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEDSWAALNWVASHAGGNGPEPWLNDHADFG-KVLIGGASAGGNIAHTLAFRVGSIGLPCVKLVGVIMVHPFFGG----------------TSPEEDATWLYMCPTNAGLQDPRLK---PPAEDLARLGCERVLIFVAEKDFLKPVAMNYYEDLKKSGWKGTVDLFETHGEGHSFYF----DNLKCEKAVELINKFVSFI 736
            +P+L +  GG F   SA    Y  FC         +VVSV+Y   P+   P  Y+D W ALNWV S         WL    D    V + G S+GGNIAH +A R  + G   VK++G I++HP FGG                T  + D  W    P       P      P  + L  +   + L+ VA  D ++   + Y + LKK+G +  V+L         FYF    D+  C   +E +NKFV  I
Sbjct:  106 VPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV-------WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNEG---VKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLE--VNLLYLKQATIGFYFLPNNDHFHC--LMEELNKFVHSI 344          
BLAST of FC877848 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.888e-20
Identity = 69/247 (27.94%), Postives = 104/247 (42.11%), Query Frame = 2
Query:   50 LPLLFYVRGGGFCGQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEDSWAALNWVASHAGGNGPEPWLNDHADFG-KVLIGGASAGGNIAHTLAFRVGSIGLPCVKLVGVIMVHPFFGG----------------TSPEEDATWLYMCPTNAGLQDPR---LKPPAEDLARLGCERVLIFVAEKDFLKPVAMNYYEDLKKSGWKGTVDLFETHGEGHSFYFDNLKCEKAVELINKFVS 730
            +P++ +  GG F   SA    Y   C         +VVSV Y   P+ P P  Y+D W ALNWV S +       WL    D    + + G S+GGNIAH +A R G  G   + ++G I+++P FGG                T  + D  W    P     + P      P  + L  +   + L+ VA  D ++   + Y E LKK+G +  +   E    G     +N      ++ I+ FV+
Sbjct:  106 VPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS-------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESG---IDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVN 342          
BLAST of FC877848 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.611e-18
Identity = 64/221 (28.96%), Postives = 94/221 (42.53%), Query Frame = 2
Query:   23 EAQNPNQNKL-PLLFYVRGGGFCGQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEDSWAALNWVASHAGGNGPEPWLNDHADFG-KVLIGGASAGGNIAHTLAFRVGSIGLPCVKLVGVIMVHPFFGGTSPEE----------------DATWLYMCPTNAGLQDPRLK---PPAEDLARLGCERVLIFVAEKDFLKPVAMNYYEDLKKSG 622
            + QNP   ++ P++ +  GG F   SA    Y   C        A+VVSV Y   P+   P  Y+D WA L WV S +       WL    D   ++ + G S+GGNI H +A R        + ++G I+++P FGGT   E                D  W    P     + P      P ++ L  L   + L+ VA  D ++   + Y E LKK+G
Sbjct:   94 DLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS-------WLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAG 304          
BLAST of FC877848 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.752e-17
Identity = 71/262 (27.10%), Postives = 107/262 (40.84%), Query Frame = 2
Query:    5 RIFIPYEAQNPNQNKLPLLFYVRGGGFCGQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEDSWAALNWVASHAGGNGPEPWLNDHADF-GKVLIGGASAGGNIAHTLAFRVGSIGLPCVKLVGVIMVHPFFGGTSPEE----------------DATWLYMCPTNAGLQDPRLKPPAEDLARLG---CERVLIFVAEKDFLKPVAMNYYEDLKKSGWKGTVDLFETHGEGHSFYFDNLKCEKAVELINKFVS 730
            R  + +    P     P++ +  GG F   SA    Y + C  F   +  +VVSV Y   P+   P  Y+D W AL WV S       +P++    D   +V + G S+GGNIAH +A R    G   VK+ G I+++  FGGT   E                D  W    P +A    P   P   +  RLG     + LI V+  D      + Y + L++ G    V   E    G     + +   + +E I+ F++
Sbjct:   98 RPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADEG---VKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLN 349          
BLAST of FC877848 vs. ExPASy Swiss-Prot
Match: YFZ3_SCHPO (AB hydrolase superfamily protein C1039.03 OS=Schizosaccharomyces pombe GN=SPAC1039.03 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.131e-11
Identity = 64/238 (26.89%), Postives = 98/238 (41.18%), Query Frame = 2
Query:    2 ARIFIPYEAQNPNQNKLPLLFYVRGGGFCGQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEDSWAALNWVASHAGGNGPEPWLNDHADFGKVLIGGASAGGNIAHTLAFRVGSIGLPCVKLVGVIMVHPFFGGTS-----------------PEEDATWL--YMCPTNAGLQDPRLKP---PAEDLARLGCERVLIFVAEKDFLKPVAMNYYEDLKKSGWKGTVDLFE 649
            +RIF P+      +   P   +  GGG+   +      ++F +    QA  +VV+V+Y   P+ P PAC +D W AL +   +A   G  P         K+ +GG+SAGGNIA  L+ +V +       LV  ++V P    T+                 P     W   +  P      +P   P   P      + C   LI  A  D L   A+ Y E L K+G + T+ ++E
Sbjct:   86 SRIFRPHGTAP--EGGWPCFLWFHGGGWVLGNI--NTENSFATHMCEQAKCVVVNVDYRLAPEDPFPACIDDGWEALLYCYENADTLGINP--------NKIAVGGSSAGGNIAAVLSHKVAASPANFPPLVLQLLVVPVCDNTANAKTHKSWELFENTPQLPAAKMMWYRRHYLPNEKDWSNPEASPFFYPDSSFKNV-CP-ALICAAGCDVLSSEAIAYNEKLTKAGVESTIKIYE 309          
The following BLAST results are available for this feature:
BLAST of FC877848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GI1L2_ARATH2.000e-2131.23Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH2.888e-2027.94Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L3_ARATH4.611e-1828.96Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GID1_ORYSJ1.752e-1727.10Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
YFZ3_SCHPO7.131e-1126.89AB hydrolase superfamily protein C1039.03 OS=Schiz... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA15CA01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877848 ID=FC877848; Name=FC877848; organism=Citrus clementina; type=EST; length=875bp
TGCTCGTATCTTCATTCCGTATGAAGCCCAAAACCCTAACCAGAATAAGC
TCCCTCTCTTATTCTACGTGCGTGGCGGCGGATTCTGCGGGCAGTCCGCC
TTTGGTCCGCGGTATCATAATTTCTGTAGCGTCTTTTCTGCACAAGCTAA
TGCTATAGTGGTGTCCGTGGAATATGGGAATTTCCCGGATCGACCCATAC
CCGCTTGTTACGAAGACTCGTGGGCTGCACTCAACTGGGTGGCGTCCCAT
GCTGGCGGAAATGGACCCGAGCCATGGTTGAATGATCACGCTGATTTTGG
GAAAGTTTTGATTGGAGGAGCCAGCGCTGGAGGGAATATTGCACACACTC
TGGCGTTTCGGGTCGGGTCAATCGGGTTACCTTGTGTAAAGTTGGTTGGG
GTGATCATGGTGCATCCATTTTTTGGTGGCACTAGTCCTGAAGAAGATGC
GACGTGGTTGTATATGTGTCCAACAAACGCAGGGTTGCAGGATCCTCGGC
TGAAACCGCCCGCAGAGGATCTGGCCAGGCTTGGCTGTGAGAGGGTTTTG
ATATTTGTGGCTGAGAAAGATTTTTTGAAACCTGTGGCTATGAATTACTA
CGAAGACTTGAAGAAAAGTGGGTGGAAAGGAACGGTGGACCTTTTTGAGA
CTCACGGCGAAGGGCATAGCTTCTATTTCGACAATCTTAAATGTGAAAAA
GCTGTAGAGCTGATCAATAAGTTTGTTTCGTTTATCACACAACTTTAGTT
AATTAGTGCGGTGTTTATGAGAGGGATTATATGTATGTTTTGCTTTTGTT
AGTATATTTAGGATTTACTCGTAGGCTTGAACTTGATGTAATGCATGTGT
TAAGGTTATTAATAAAATCCCTCGT
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