FC877849

Overview
NameFC877849
Unique NameFC877849
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length884
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877849_ssr63 microsatellite FC877849_ssr63:63..77. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13701 contig Ccv1_Contig13701:50..947. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: VPS91_SCHPO (Vacuolar protein sorting-associated protein 9a OS=Schizosaccharomyces pombe GN=vps901 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.900e-27
Identity = 79/274 (28.83%), Postives = 144/274 (52.55%), Query Frame = 3
Query:  108 FYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFAST------------SEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFE-------KSMQAARLANK 872
            F+ FL+++R+ ++  + + +KSF+  F+          K +++F   +   I+ +  WA+ +  +I++A EG+EK V+ +L++  F+              S+DV+ D+ +SEK+ L Q ++  E+LDI     +   + LA  EL++IN   APR+K+                + +   V+   AD F+P+LI+++++A P  L SNI++IQ +R    L  E  YY + L+ A +FI  L+  SL++ E EF        K M+  +L+ K
Sbjct:  115 FHMFLEQLRSSSAEPVAKYLKSFLSEFTKRRWTVNYQVKLIRDFLKFINEKIEQYEPWASGSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSEHSDDVEEDRVLSEKMELFQ-WITEENLDIKKQKSSSKFFKLAADELRRINDYHAPRDKIICLLNCCKVIF-----SYLRNVVKEESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKLTGEVMYYLSTLMGAMSFIETLDCSSLTITEEEFNAQIEKSIKKMEERKLSEK 382          
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: VPS9_YEAST (Vacuolar protein sorting-associated protein 9 OS=Saccharomyces cerevisiae GN=VPS9 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.558e-21
Identity = 80/270 (29.63%), Postives = 131/270 (48.52%), Query Frame = 3
Query:  108 FYDF---LDRMRNPASLDLVRSIKSFIVSFSFNNA--NPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFAST-------------SEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQN---EASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETE-FEKSMQ 851
            FYDF   + +++ P +  LV+  KSF+ +F           + K + +F T +      +  + +     + +A EG+EK +M KL+SR F+ +              +D+  D  + EKI   + F+ P  LDIP  + N        LA KEL KIN  K+PR+K+                  + +N    GAD F+PVLIY I+K     L SN+ +I+ +R    +  E  YY ++L +A  FI+ L  +SL++++ E FE++ Q
Sbjct:   60 FYDFQIFIKQLQTPGADPLVKYTKSFLRNFLAQRLLWTVSEEIKLISDFKTFIYDKFTLYEPFRSLDNSKMRNAKEGMEKLIMGKLYSRCFSPSLYEILQKPLDDEHMKDLTNDDTLLEKIRHYR-FISPIMLDIPDTMPNARLNKFVHLASKELGKINRFKSPRDKMVCVLNASKVIFGLLKHTKLEQN----GADSFIPVLIYCILKGQVRYLVSNVNYIERFRSPDFIRGEEEYYLSSLQAALNFIMSLTERSLTIDDHEDFEEAYQ 324          
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: RABX5_BOVIN (Rab5 GDP/GTP exchange factor OS=Bos taurus GN=RABGEF1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.545e-20
Identity = 72/253 (28.46%), Postives = 133/253 (52.57%), Query Frame = 3
Query:  108 FYDFLDRMRNPASLDLVRSIKSFIVSFSFN-NANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQ-NEASWLLAEK--ELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSM 848
            F +FL         ++ +  K F+ +  +  + + E   +  Q+F+  +   ++          E +E  M+ +EKY+MT+L+   F   T++D K D  I ++I  L  ++ P+ L +P   +  E S ++ +   ++ ++++ + PR+K+                  I++N E   ADDFLP LIYI++K NPP+L SNI++I  +   + L++ E  YYFTNL  A  FI  L+A+SL++ + +F++ M
Sbjct:  143 FIEFLKTFHKTGQ-EIYKQTKLFLEAMHYKRDLSIEEQSECTQDFYQNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKN-EPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYM 386          
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: RABX5_MOUSE (Rab5 GDP/GTP exchange factor OS=Mus musculus GN=Rabgef1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.548e-20
Identity = 72/253 (28.46%), Postives = 133/253 (52.57%), Query Frame = 3
Query:  108 FYDFLDRMRNPASLDLVRSIKSFIVSFSFN-NANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQ-NEASWLLAEK--ELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSM 848
            F DFL         ++ +  K F+ +  +  + + E   +  Q+F+  +   ++          E +E  M+ +EK++MT+L+   F   T++D K D  I ++I  L  ++ P+ L +P   +  E S ++ +   ++ ++++ + PR+K+                  I++N E   ADDFLP LIYI++K NPP+L SNI++I  +   + L++ E  YYFTNL  A  FI  L+A+SL++ + +F++ M
Sbjct:  142 FIDFLKTFHKTGQ-EVYKQTKMFLEAMPYKRDLSIEEQSECTQDFYQNVAERMQTR---GKVPPEKVEKIMDQIEKHIMTRLYKFVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITRCSKHIFNAI---KITKN-EPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYM 385          
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: GAPD1_HUMAN (GTPase-activating protein and VPS9 domain-containing protein 1 OS=Homo sapiens GN=GAPVD1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 8.548e-20
Identity = 64/214 (29.91%), Postives = 106/214 (49.53%), Query Frame = 3
Query:  159 RSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 791
            + I+ FI  F    A  +   + V++F   +  A+    +W NA+ E ++ A   +E+ VM ++F   F    + D+  DQ + E I  L   +   H  L IP     EA W  A+ E++ I+A K PR+KV                 S++    + GADDF+PVL++++IKANPP L S +++I  +   + L  E +Y++    +A  FI
Sbjct: 1263 KKIREFIQDFQKLTAADDKTAQ-VEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFI 1471          
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: GAPD1_BOVIN (GTPase-activating protein and VPS9 domain-containing protein 1 OS=Bos taurus GN=GAPVD1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.548e-20
Identity = 64/214 (29.91%), Postives = 106/214 (49.53%), Query Frame = 3
Query:  159 RSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 791
            + I+ FI  F    A  +   + V++F   +  A+    +W NA+ E ++ A   +E+ VM ++F   F    + D+  DQ + E I  L   +   H  L IP     EA W  A+ E++ I+A K PR+KV                 S++    + GADDF+PVL++++IKANPP L S +++I  +   + L  E +Y++    +A  FI
Sbjct: 1198 KKIREFIQDFQKLTAADDKTAQ-VEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLKEAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFI 1406          
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: GAPD1_XENLA (GTPase-activating protein and VPS9 domain-containing protein 1 OS=Xenopus laevis GN=gapvd1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-19
Identity = 63/212 (29.72%), Postives = 104/212 (49.06%), Query Frame = 3
Query:  165 IKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 791
            I  FI  F    A  +   + V+EF  ++  A+    +W NA+ E ++ A   +E+ +M ++F   F    + D+  DQ + E I  L   +   H  L IP     EA W  A+ E++ I+A K PR+KV                 S++    + GADDF+PVL++++IKANP  L S +++I  +     L+ E +Y++    +A  FI
Sbjct: 1239 IHEFIQDFQKLTAADDKTAQ-VEEFLQSLYGAMAQDVIWQNASEEQLQDAQIAIERSIMNRIFKLAFNPNQDADILRDQVLHEHIKRLSKVVTANHRALQIPEVYLREAPWPSAQTEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEYSVPGADDFVPVLVFVLIKANPTYLLSTVQYISSFYSN-RLIGEESYWWMQFTAAVEFI 1445          
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: RABX5_HUMAN (Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RABGEF1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.487e-19
Identity = 64/189 (33.86%), Postives = 110/189 (58.20%), Query Frame = 3
Query:  297 EDIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQ-NEASWLLAEK--ELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSM 848
            E +E  M+ +EKY+MT+L+   F   T++D K D  I ++I  L+ ++ P+ L +P      E S ++ +   ++ ++++ + PR+K+                  I++N E   ADDFLP LIYI++K NPP+L SNI++I  +   + L++ E  YYFTNL  A  FI  L+A+SL++ + +F++ M
Sbjct:  419 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALR-WVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKN-EPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYM 602          
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: GAPD1_MOUSE (GTPase-activating protein and VPS9 domain-containing protein 1 OS=Mus musculus GN=Gapvd1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.487e-19
Identity = 63/214 (29.44%), Postives = 105/214 (49.07%), Query Frame = 3
Query:  159 RSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 791
            + I+ FI  F    A  +   + V++F   +   +    +W NA+ E ++ A   +E+ VM ++F   F    + D+  DQ + E I  L   +   H  L IP     EA W  A+ E++ I+A K PR+KV                 S++    + GADDF+PVL++++IKANPP L S +++I  +   + L  E +Y++    +A  FI
Sbjct: 1243 KKIREFIQDFQKLTAADDKTAQ-VEDFLQFLYGVMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFI 1451          
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: RME6_CAEBR (Receptor-mediated endocytosis protein 6 OS=Caenorhabditis briggsae GN=rme-6 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.279e-15
Identity = 62/215 (28.84%), Postives = 97/215 (45.12%), Query Frame = 3
Query:  156 VRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 791
            V ++  F   F F  A+ E   + +Q   T +   +  +  W  AT   I  AM  +E++VM  ++   F    E D K D+ +   I    + + P H  L IP  L  EA W  A+ EL  ++     +EK+                 ++S    +  ADD  PVL+++IIKANP  L SN++FI+ +    +     AYY+ N  SA  +I
Sbjct:  890 VVAVGKFYSEFKFLQAHDER-AEFLQNLLTYLRERLMQNYDWNFATESMIARAMTTMERFVMFAVYEIAFWPNREMDQKKDKLLQSVIGKASSSVTPVHEALKIPEHLLGEAPWPSAQAELSMLDNYVTAQEKLNCLVRCCDVINNL---VALSSKNAVASADDLTPVLVFVIIKANPRSLLSNLQFIETFAGDQIESGRDAYYWVNFKSAVEYI 1100          
The following BLAST results are available for this feature:
BLAST of FC877849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
VPS91_SCHPO1.900e-2728.83Vacuolar protein sorting-associated protein 9a OS=... [more]
VPS9_YEAST1.558e-2129.63Vacuolar protein sorting-associated protein 9 OS=S... [more]
RABX5_BOVIN6.545e-2028.46Rab5 GDP/GTP exchange factor OS=Bos taurus GN=RABG... [more]
RABX5_MOUSE8.548e-2028.46Rab5 GDP/GTP exchange factor OS=Mus musculus GN=Ra... [more]
GAPD1_HUMAN8.548e-2029.91GTPase-activating protein and VPS9 domain-containi... [more]
GAPD1_BOVIN8.548e-2029.91GTPase-activating protein and VPS9 domain-containi... [more]
GAPD1_XENLA1.116e-1929.72GTPase-activating protein and VPS9 domain-containi... [more]
RABX5_HUMAN2.487e-1933.86Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RA... [more]
GAPD1_MOUSE2.487e-1929.44GTPase-activating protein and VPS9 domain-containi... [more]
RME6_CAEBR8.279e-1528.84Receptor-mediated endocytosis protein 6 OS=Caenorh... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA53BF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877849 ID=FC877849; Name=FC877849; organism=Citrus clementina; type=EST; length=884bp
CTCAAGCCCGCATTTACTTTCCTTTTCGTCTATTTCACCCAAAGCATTTC
CAAATGGACACTTCGTCGTCGTCGTCGGCGTCCGCCGCCGCTCCCTCAGC
AGTGACCTTCTACGATTTTCTCGATCGCATGCGCAACCCCGCTTCCCTCG
ATCTCGTTCGCTCCATCAAAAGCTTCATAGTATCGTTTTCATTTAACAAT
GCGAACCCCGAAAATGATGGCAAAAGAGTTCAAGAATTCTTCACGACAAT
GGAATCTGCTATTAAAGATCATCCCTTGTGGGCTAATGCCACCATTGAAG
ATATTGAGTCGGCTATGGAGGGTCTGGAGAAATATGTCATGACAAAACTG
TTTTCTCGGACATTTGCATCAACTTCTGAAGATGTGAAGATTGATCAAGA
AATTTCAGAGAAGATATGTTTGCTGCAAACCTTCTTGAGGCCTGAACACT
TGGATATACCAACGTTTCTTCAAAATGAAGCTTCGTGGCTGCTTGCGGAG
AAAGAACTGCAGAAGATCAATGCTCTTAAAGCTCCTCGTGAGAAGGTTCT
TTGTATTATGAATTGTTGCAGGATCATCAACAATTTGCTTCTCAATGCAT
CTATTTCGGAAAACGTTGAGCTGGGAGGAGCTGATGACTTTCTTCCCGTC
CTAATTTACATTATCATCAAGGCCAATCCTCCTCAGTTGCATTCAAACAT
CAAATTCATTCAGTTGTACCGGAGGCAGGCAATGCTTGTTTCAGAAGCAG
CTTATTATTTCACAAATCTTGTCTCAGCCAAGACATTTATTCTTGACTTA
AATGCTAAATCACTTTCTATGGAGGAAACTGAGTTCGAGAAAAGTATGCA
AGCTGCAAGATTAGCCAACAAAGTTACTCTTATT
back to top