FC877849
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: VPS91_SCHPO (Vacuolar protein sorting-associated protein 9a OS=Schizosaccharomyces pombe GN=vps901 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.900e-27 Identity = 79/274 (28.83%), Postives = 144/274 (52.55%), Query Frame = 3 Query: 108 FYDFLDRMRNPASLDLVRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFAST------------SEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETEFE-------KSMQAARLANK 872 F+ FL+++R+ ++ + + +KSF+ F+ K +++F + I+ + WA+ + +I++A EG+EK V+ +L++ F+ S+DV+ D+ +SEK+ L Q ++ E+LDI + + LA EL++IN APR+K+ + + V+ AD F+P+LI+++++A P L SNI++IQ +R L E YY + L+ A +FI L+ SL++ E EF K M+ +L+ K Sbjct: 115 FHMFLEQLRSSSAEPVAKYLKSFLSEFTKRRWTVNYQVKLIRDFLKFINEKIEQYEPWASGSQAEIDNAKEGMEKLVLNRLYTSLFSPEIAKSGIPLSSEHSDDVEEDRVLSEKMELFQ-WITEENLDIKKQKSSSKFFKLAADELRRINDYHAPRDKIICLLNCCKVIF-----SYLRNVVKEESADMFVPILIFVVLQARPAHLVSNIQYIQRFRSPEKLTGEVMYYLSTLMGAMSFIETLDCSSLTITEEEFNAQIEKSIKKMEERKLSEK 382
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: VPS9_YEAST (Vacuolar protein sorting-associated protein 9 OS=Saccharomyces cerevisiae GN=VPS9 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.558e-21 Identity = 80/270 (29.63%), Postives = 131/270 (48.52%), Query Frame = 3 Query: 108 FYDF---LDRMRNPASLDLVRSIKSFIVSFSFNNA--NPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFAST-------------SEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQN---EASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFILDLNAKSLSMEETE-FEKSMQ 851 FYDF + +++ P + LV+ KSF+ +F + K + +F T + + + + + +A EG+EK +M KL+SR F+ + +D+ D + EKI + F+ P LDIP + N LA KEL KIN K+PR+K+ + +N GAD F+PVLIY I+K L SN+ +I+ +R + E YY ++L +A FI+ L +SL++++ E FE++ Q Sbjct: 60 FYDFQIFIKQLQTPGADPLVKYTKSFLRNFLAQRLLWTVSEEIKLISDFKTFIYDKFTLYEPFRSLDNSKMRNAKEGMEKLIMGKLYSRCFSPSLYEILQKPLDDEHMKDLTNDDTLLEKIRHYR-FISPIMLDIPDTMPNARLNKFVHLASKELGKINRFKSPRDKMVCVLNASKVIFGLLKHTKLEQN----GADSFIPVLIYCILKGQVRYLVSNVNYIERFRSPDFIRGEEEYYLSSLQAALNFIMSLTERSLTIDDHEDFEEAYQ 324
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: RABX5_BOVIN (Rab5 GDP/GTP exchange factor OS=Bos taurus GN=RABGEF1 PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.545e-20 Identity = 72/253 (28.46%), Postives = 133/253 (52.57%), Query Frame = 3 Query: 108 FYDFLDRMRNPASLDLVRSIKSFIVSFSFN-NANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQ-NEASWLLAEK--ELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSM 848 F +FL ++ + K F+ + + + + E + Q+F+ + ++ E +E M+ +EKY+MT+L+ F T++D K D I ++I L ++ P+ L +P + E S ++ + ++ ++++ + PR+K+ I++N E ADDFLP LIYI++K NPP+L SNI++I + + L++ E YYFTNL A FI L+A+SL++ + +F++ M Sbjct: 143 FIEFLKTFHKTGQ-EIYKQTKLFLEAMHYKRDLSIEEQSECTQDFYQNVAERMQTR---GKVPPERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKN-EPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYM 386
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: RABX5_MOUSE (Rab5 GDP/GTP exchange factor OS=Mus musculus GN=Rabgef1 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 8.548e-20 Identity = 72/253 (28.46%), Postives = 133/253 (52.57%), Query Frame = 3 Query: 108 FYDFLDRMRNPASLDLVRSIKSFIVSFSFN-NANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQ-NEASWLLAEK--ELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSM 848 F DFL ++ + K F+ + + + + E + Q+F+ + ++ E +E M+ +EK++MT+L+ F T++D K D I ++I L ++ P+ L +P + E S ++ + ++ ++++ + PR+K+ I++N E ADDFLP LIYI++K NPP+L SNI++I + + L++ E YYFTNL A FI L+A+SL++ + +F++ M Sbjct: 142 FIDFLKTFHKTGQ-EVYKQTKMFLEAMPYKRDLSIEEQSECTQDFYQNVAERMQTR---GKVPPEKVEKIMDQIEKHIMTRLYKFVFCPETTDDEKKDLAIQKRIRALH-WVTPQMLCVPVNEEIPEVSDMVVKAITDIIEMDSKRVPRDKLACITRCSKHIFNAI---KITKN-EPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYM 385
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: GAPD1_HUMAN (GTPase-activating protein and VPS9 domain-containing protein 1 OS=Homo sapiens GN=GAPVD1 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 8.548e-20 Identity = 64/214 (29.91%), Postives = 106/214 (49.53%), Query Frame = 3 Query: 159 RSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 791 + I+ FI F A + + V++F + A+ +W NA+ E ++ A +E+ VM ++F F + D+ DQ + E I L + H L IP EA W A+ E++ I+A K PR+KV S++ + GADDF+PVL++++IKANPP L S +++I + + L E +Y++ +A FI Sbjct: 1263 KKIREFIQDFQKLTAADDKTAQ-VEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFI 1471
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: GAPD1_BOVIN (GTPase-activating protein and VPS9 domain-containing protein 1 OS=Bos taurus GN=GAPVD1 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 8.548e-20 Identity = 64/214 (29.91%), Postives = 106/214 (49.53%), Query Frame = 3 Query: 159 RSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 791 + I+ FI F A + + V++F + A+ +W NA+ E ++ A +E+ VM ++F F + D+ DQ + E I L + H L IP EA W A+ E++ I+A K PR+KV S++ + GADDF+PVL++++IKANPP L S +++I + + L E +Y++ +A FI Sbjct: 1198 KKIREFIQDFQKLTAADDKTAQ-VEDFLQFLYGAMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLKEAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFI 1406
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: GAPD1_XENLA (GTPase-activating protein and VPS9 domain-containing protein 1 OS=Xenopus laevis GN=gapvd1 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.116e-19 Identity = 63/212 (29.72%), Postives = 104/212 (49.06%), Query Frame = 3 Query: 165 IKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 791 I FI F A + + V+EF ++ A+ +W NA+ E ++ A +E+ +M ++F F + D+ DQ + E I L + H L IP EA W A+ E++ I+A K PR+KV S++ + GADDF+PVL++++IKANP L S +++I + L+ E +Y++ +A FI Sbjct: 1239 IHEFIQDFQKLTAADDKTAQ-VEEFLQSLYGAMAQDVIWQNASEEQLQDAQIAIERSIMNRIFKLAFNPNQDADILRDQVLHEHIKRLSKVVTANHRALQIPEVYLREAPWPSAQTEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEYSVPGADDFVPVLVFVLIKANPTYLLSTVQYISSFYSN-RLIGEESYWWMQFTAAVEFI 1445
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: RABX5_HUMAN (Rab5 GDP/GTP exchange factor OS=Homo sapiens GN=RABGEF1 PE=1 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 2.487e-19 Identity = 64/189 (33.86%), Postives = 110/189 (58.20%), Query Frame = 3 Query: 297 EDIESAMEGLEKYVMTKLFSRTFA-STSEDVKIDQEISEKICLLQTFLRPEHLDIPTFLQ-NEASWLLAEK--ELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVS-EAAYYFTNLVSAKTFILDLNAKSLSMEETEFEKSM 848 E +E M+ +EKY+MT+L+ F T++D K D I ++I L+ ++ P+ L +P E S ++ + ++ ++++ + PR+K+ I++N E ADDFLP LIYI++K NPP+L SNI++I + + L++ E YYFTNL A FI L+A+SL++ + +F++ M Sbjct: 419 ERVEKIMDQIEKYIMTRLYKYVFCPETTDDEKKDLAIQKRIRALR-WVTPQMLCVPVNEDIPEVSDMVVKAITDIIEMDSKRVPRDKLACITKCSKHIFNAI---KITKN-EPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSQEDFDRYM 602
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: GAPD1_MOUSE (GTPase-activating protein and VPS9 domain-containing protein 1 OS=Mus musculus GN=Gapvd1 PE=1 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 2.487e-19 Identity = 63/214 (29.44%), Postives = 105/214 (49.07%), Query Frame = 3 Query: 159 RSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 791 + I+ FI F A + + V++F + + +W NA+ E ++ A +E+ VM ++F F + D+ DQ + E I L + H L IP EA W A+ E++ I+A K PR+KV S++ + GADDF+PVL++++IKANPP L S +++I + + L E +Y++ +A FI Sbjct: 1243 KKIREFIQDFQKLTAADDKTAQ-VEDFLQFLYGVMAQDVIWQNASEEQLQDAQLAIERSVMNRIFKLAFYPNQDGDILRDQVLHEHIQRLSKVVTANHRALQIPEVYLREAPWPSAQSEIRTISAYKTPRDKVQCILRMCSTIMNLL---SLANEDSVPGADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTAAVEFI 1451
BLAST of FC877849 vs. ExPASy Swiss-Prot
Match: RME6_CAEBR (Receptor-mediated endocytosis protein 6 OS=Caenorhabditis briggsae GN=rme-6 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 8.279e-15 Identity = 62/215 (28.84%), Postives = 97/215 (45.12%), Query Frame = 3 Query: 156 VRSIKSFIVSFSFNNANPENDGKRVQEFFTTMESAIKDHPLWANATIEDIESAMEGLEKYVMTKLFSRTFASTSE-DVKIDQEISEKICLLQTFLRPEH--LDIPTFLQNEASWLLAEKELQKINALKAPREKVXXXXXXXXXXXXXXXXASISENVELGGADDFLPVLIYIIIKANPPQLHSNIKFIQLYRRQAMLVSEAAYYFTNLVSAKTFI 791 V ++ F F F A+ E + +Q T + + + W AT I AM +E++VM ++ F E D K D+ + I + + P H L IP L EA W A+ EL ++ +EK+ ++S + ADD PVL+++IIKANP L SN++FI+ + + AYY+ N SA +I Sbjct: 890 VVAVGKFYSEFKFLQAHDER-AEFLQNLLTYLRERLMQNYDWNFATESMIARAMTTMERFVMFAVYEIAFWPNREMDQKKDKLLQSVIGKASSSVTPVHEALKIPEHLLGEAPWPSAQAELSMLDNYVTAQEKLNCLVRCCDVINNL---VALSSKNAVASADDLTPVLVFVIIKANPRSLLSNLQFIETFAGDQIESGRDAYYWVNFKSAVEYI 1100 The following BLAST results are available for this feature:
BLAST of FC877849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877849 ID=FC877849; Name=FC877849; organism=Citrus clementina; type=EST; length=884bpback to top |