FC877851

Overview
NameFC877851
Unique NameFC877851
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7003 contig Ccv1_Contig7003:1..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877851 vs. ExPASy Swiss-Prot
Match: FRIGI_ARATH (Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.947e-14
Identity = 65/263 (24.71%), Postives = 114/263 (43.35%), Query Frame = 3
Query:   51 SKKLNLKKAFDDXXXXXXXXXXFPLNWSDLDAHYTHVQNNLTHRFRLLESLASTQSQSPPGRGDSVHDPPPSQDRNDSA--PTLPESQLPTQSKPQADPLXXXXXXXXXARPELKALCENMDGNGLRKYINDNPKERELIRLELPDAIRVAPDPGLMVLEAVEGFYGVNSHLKGNKNPELCGFRRACVLLLEVLMGI------NVDIGSEVREKAKTVAFEWKQKVK----LDEESSFEALGLLHLVAAYGLGCEFEKNDLVE 803
            SK+    K+ D+          F   + DL  H   ++N        ++S   +       R ++ H P  S  RN+ +   T+  SQ   +  P+              +PE   +CE M   GLRKYI  N  ++  +  E+P A+++A +P   VL+ +  FY +       K   +   R+  +L+LE  + +       V I S ++++A+T A  W++++     L      +A GLL LVA +G+   F   DL++
Sbjct:   50 SKQPQFLKSIDELAAFSVAVETFKRQFDDLQKHIESIEN-------AIDSKLESNGVVLAARNNNFHQPMLSPPRNNVSVETTVTVSQPSQEIVPETSN-----------KPEGGRMCELMCSKGLRKYIYANISDQAKLMEEIPSALKLAKEPAKFVLDCIGKFY-LQGRRAFTKESPMSSARQVSLLILESFLLMPDRGKGKVKIESWIKDEAETAAVAWRKRLMTEGGLAAAEKMDARGLLLLVACFGVPSNFRSTDLLD 293          
The following BLAST results are available for this feature:
BLAST of FC877851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FRIGI_ARATH3.947e-1424.71Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA65DB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877851 ID=FC877851; Name=FC877851; organism=Citrus clementina; type=EST; length=864bp
TGACAATGGCGACACTGGAGGCAATAGCAGCGGCAATAAAAGAAATAGAC
AGCAAAAAACTAAACCTCAAGAAAGCGTTCGATGACCTGCAATCCCACTC
CTCGCTTCTCTCTTCCTTCCCTCTCAATTGGTCCGATTTGGACGCCCACT
ACACCCACGTCCAGAACAACCTCACTCACCGCTTCCGCCTCCTCGAATCG
CTCGCCTCCACTCAGTCCCAATCTCCTCCCGGCCGAGGCGACTCAGTACA
TGACCCTCCTCCGAGTCAGGACCGAAATGACTCGGCACCGACTCTTCCGG
AGTCGCAATTACCGACCCAGTCGAAACCTCAGGCGGACCCGTTGGTTTCT
GTCCCTGTCGTCTCAGTTGTGGCTCGGCCGGAGTTGAAAGCGCTGTGTGA
GAATATGGACGGTAATGGGTTGAGAAAATACATTAACGACAACCCAAAAG
AGCGAGAATTGATTCGGCTTGAGCTCCCAGATGCTATCCGGGTCGCCCCT
GATCCGGGTTTGATGGTCTTGGAGGCTGTGGAAGGGTTCTATGGGGTTAA
TAGTCACTTGAAAGGCAATAAAAACCCGGAGTTGTGCGGGTTTAGGAGGG
CTTGCGTGTTGTTATTGGAGGTTTTGATGGGAATTAATGTGGATATTGGG
AGCGAAGTGAGGGAGAAAGCAAAAACGGTGGCCTTTGAGTGGAAACAGAA
GGTGAAGTTGGATGAGGAGAGTAGTTTTGAGGCACTGGGGTTGTTGCATT
TAGTGGCGGCGTACGGGTTGGGATGTGAGTTTGAAAAGAATGATCTTGTT
GAGTACTTTGTCATTGTTGCAAAGTACCGGCAGAGTACCTTGTTGTGCAA
GGTAATTGGGTTGG
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