FC877853

Overview
NameFC877853
Unique NameFC877853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10467 contig Ccv1_Contig10467:1..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.028e-25
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.028e-25
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.567e-25
Identity = 54/56 (96.43%), Postives = 54/56 (96.43%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAY YVSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQ
Sbjct:    2 GAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.618e-23
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELW+KKQSDVMRFLQRVRCWEYRQ P IVR+T PTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.759e-23
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELW+KKQSDVMRFLQRVRCWE+RQ P IVRVTRP+RPDKARRLGYKAKQ
Sbjct:    2 GAYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_MYLPI (60S ribosomal protein L15 OS=Mylopharyngodon piceus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.674e-20
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_CTEID (60S ribosomal protein L15 OS=Ctenopharyngodon idella GN=rpl15 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.674e-20
Identity = 46/56 (82.14%), Postives = 49/56 (87.50%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_RAT (60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.186e-20
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_PONAB (60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 2.186e-20
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57          
BLAST of FC877853 vs. ExPASy Swiss-Prot
Match: RL15_MOUSE (60S ribosomal protein L15 OS=Mus musculus GN=Rpl15 PE=2 SV=4)

HSP 1 Score: 99.7525 bits (247), Expect = 2.186e-20
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 3
Query:  228 GAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQ 395
            GAYKY+ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ
Sbjct:    2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQ 57          
The following BLAST results are available for this feature:
BLAST of FC877853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RL152_ARATH5.028e-2594.6460S ribosomal protein L15-2 OS=Arabidopsis thalian... [more]
RL151_ARATH5.028e-2594.6460S ribosomal protein L15-1 OS=Arabidopsis thalian... [more]
RL15_PETHY6.567e-2596.4360S ribosomal protein L15 OS=Petunia hybrida GN=RP... [more]
RL15B_PICMA1.618e-2387.5060S ribosomal protein L15-2 OS=Picea mariana GN=SB... [more]
RL15A_PICMA2.759e-2387.5060S ribosomal protein L15-1 OS=Picea mariana GN=SB... [more]
RL15_MYLPI1.674e-2082.1460S ribosomal protein L15 OS=Mylopharyngodon piceu... [more]
RL15_CTEID1.674e-2082.1460S ribosomal protein L15 OS=Ctenopharyngodon idel... [more]
RL15_RAT2.186e-2080.3660S ribosomal protein L15 OS=Rattus norvegicus GN=... [more]
RL15_PONAB2.186e-2080.3660S ribosomal protein L15 OS=Pongo abelii GN=RPL15... [more]
RL15_MOUSE2.186e-2080.3660S ribosomal protein L15 OS=Mus musculus GN=Rpl15... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877853 ID=FC877853; Name=FC877853; organism=Citrus clementina; type=EST; length=870bp
AGGTGAGTTCGACGATCGAACAATGGGTACGCATTTCTCATCTCTTCTCT
ATCGCTTTCGCATATCTCATTATTAAATAATATGTAAATTAAGATCTGAA
AACATTAAGTAGCGTATGTTTGTTTCTCGCGAATTGTTCCTTCTGATTTC
AGTATTACTTTTGTTGTGATTTTATTTATTTTTATTTTTTTGGGTTTTTT
TTTTTAAATTACAAATTAAAAAAAAAAGGTGCATACAAGTACGTGTCGGA
GCTATGGAGGAAGAAGCAGTCGGATGTGATGAGGTTCTTGCAGAGGGTGA
GGTGCTGGGAGTACCGTCAGCACCCTTCCATCGTCCGCGTCACCCGTCCC
ACTCGCCCCGACAAGGCTCGCCGCTTGGGCTACAAGGCCAAGCAGGTAGG
CTAATTATTTGATTTACTGATACTTTTTTCTCTTTTGAATCAAATATGCT
GCTCATTATTTTACAGTCGTTACTCTCGTAATTCTAATGAAGTTGTAGTT
CAATGAATATGGATCTTATTCAGAAATTACAAGTATTAGGGGCCAATTTT
ATGTGAAATAGAGGTAAAATCTGTTTTTTGGTTGTATTTTTGCTTCATTA
GTGTCTGCGGTATGGGTGTTGTTTCCTGGCACAATTGTAAACCCATCAGT
TCTTATTTTCTGCTGAAGTTTAAAATCACGTCTGTCTAACTGAAAAATTG
ATGAAATAACCTAATGGTCAATATGTGTCGCTCTACGATGTGGTTACCAC
CGCTGCACCTAGGCAAGGTTTTATAGACTTTTTTTTTTATTTTAAGGCTC
TATTAATGTTCCCCCTTGCTGGTGATCTGCAGATAATGACTATGAGGAAT
TATCTTTTTGCAGGGGTATG
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