FC877855

Overview
NameFC877855
Unique NameFC877855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length902
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877855_ssr224 microsatellite FC877855_ssr224:224..235. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877855_ssr515 microsatellite FC877855_ssr515:515..532. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877855_ssr93 microsatellite FC877855_ssr93:93..104. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9443 contig Ccv1_Contig9443:17..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.592e-61
Identity = 134/225 (59.56%), Postives = 150/225 (66.67%), Query Frame = 2
Query:  158 MINFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQK----DNEEGDNK--------AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            MINFEATELRLGLP                           KRGF++TV DLKLNLS+     +  +     K         + KPPAKAQVVGWPPVRSFRKN+M+ QK    D  EG++K        +       VA+VKVSMDGAPYLRK+DLKLYK+YQ+LS+AL KMFSSFTIGN G QGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE
Sbjct:    1 MINFEATELRLGLPGGNHGGEMAGKNNG-------------KRGFSETV-DLKLNLSSTAMDSVSKVDLENMKEK-------VVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 204          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.490e-59
Identity = 133/229 (58.08%), Postives = 146/229 (63.76%), Query Frame = 2
Query:  161 INFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADT----------VVDLKLNLSTKESGGIDVI-------QKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            + FE TELRLGLP                           KRGF++T           VDL LNLS+KE+              KT  K  +   A D +KPPAK QVVGWPPVRSFRKN++AVQK   E   K       N +FVKVSMDGAPYLRKVDLK+YKSY+ELSD+LGKMFSSFT GNC SQGMKDFMNESKL DLLN SDYVPTYEDKDGDWMLVGDVPWE
Sbjct:    1 MGFEETELRLGLPGNGGTEEVLIR----------------KRGFSETETGHEDESATTVDLMLNLSSKEAATTAAAAADPTDKHKTLPKEKTLLPA-DPAKPPAKTQVVGWPPVRSFRKNMLAVQKSVGEESEK---NSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWE 209          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 8.175e-58
Identity = 122/211 (57.82%), Postives = 144/211 (68.25%), Query Frame = 2
Query:  161 INFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 793
            +N + TEL LGLP                           KRGF++TV DLKLNL + + G +D+   T G     T   D SKPPAKAQVVGWPPVR++RKN+MA QK  E    +A       VAFVKVSMDGAPYLRKVDLK+Y SY++LSDAL KMFSSFT+G+ G+QGM DFMNESK++DLLN S+YVP+YEDKDGDWMLVGDVPW
Sbjct:    1 MNLKETELCLGLPGGTETVESPAKSGVGN-----------KRGFSETV-DLKLNLQSNKQGHVDL--NTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEA--EEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPW 195          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.435e-56
Identity = 121/220 (55.00%), Postives = 146/220 (66.36%), Query Frame = 2
Query:  155 KMINFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDN---EEGDNKAXXXXXXNVA---FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            +++N +ATEL LGLP                           KRGF++TV DL LNL + + G +D ++         T   D SKPPAKAQVVGWPPVR++RKN+M  QK +   EE  ++         A    VKVSMDGAPYLRKVDLK+YKSYQ+LSDAL KMFSSFT+GN G+QGM DFMNESKL++LLN S+YVP+YEDKDGDWMLVGDVPWE
Sbjct:    4 QLMNLKATELCLGLPGGAEAVESPAKSAVGS-----------KRGFSETV-DLMLNLQSNKEGSVD-LKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWE 210          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 5.132e-52
Identity = 128/250 (51.20%), Postives = 145/250 (58.00%), Query Frame = 2
Query:  167 FEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLST----------KESGG-------IDVI------------------QKTKGKSASATGATDLSKPPA-KAQVVGWPPVRSFRKNIMAVQ----KDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            FEATELRLGLP                           KRGFA+T+ DLKL L            KE          +D++                  +++  +S+  T A D  KP A KAQVVGWPPVRS+RKNI+AVQ    KD  +G            AFVKVSMDGAPYLRKVDLK+YKSY ELS AL KMFSSFTIGNCGS G+   MNESK+ DLLNGS+YVPTYEDKDGDWMLVGDVPWE
Sbjct:    7 FEATELRLGLPGGGGDGDAAAAAARSSSG---------KRGFAETI-DLKLKLEPAAAAVDDDDDKEEAAADDREKKVDIVGADNDDASPPAAAAAGGMKRSPSQSSVVTAAADPEKPRAPKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNG-MNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWE 245          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.545e-48
Identity = 114/216 (52.78%), Postives = 134/216 (62.04%), Query Frame = 2
Query:  161 INFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLST----KESGGIDVIQKTKGKSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG-NCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 793
            +N   TEL LGLP                           KRGF++TV DLKLNL+     KE      +     K  SA    D +KPPAKAQVVGWPPVRS+RKN+M   + +  G   A        AFVKVSMDGAPYLRK+DL++YKSY ELS+AL  MFSSFT+G + G +GM DFMNE KL+DL+N  DYVP+YEDKDGDWMLVGDVPW
Sbjct:    7 LNLRETELCLGLPGGDTVAPVTGN----------------KRGFSETV-DLKLNLNNEPANKEGSTTHDVVTFDSKEKSAC-PKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAA--------AFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPW 196          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.144e-44
Identity = 112/245 (45.71%), Postives = 136/245 (55.51%), Query Frame = 2
Query:  161 INFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXM--------------------KRGFADTVVDLK-LNLSTKESGGIDVIQKTKGKSASATGATDLSK--------PPAKAQVVGWPPVRSFRKNIMA--VQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            +NF+ATELRLGLP                          +                    KRGFADT  +   +  S +  GGI+++   K K  S +   + S         P AKAQVVGWPP+RS+RKN MA    K+ +E D K        V FVKVSMDGAPYLRKVDL+ Y SYQ+LS AL KMFS FT+G CG  G   ++ M+E KL DLL+GS++V TYEDKDGDWMLVGDVPWE
Sbjct:   47 LNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGNKRGFADTWDEFSGVKGSVRPGGGINMMLSPKVKDVSKSIQEERSHAKGGLNNAPAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGL----GVLFVKVSMDGAPYLRKVDLRTYTSYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE 287          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.355e-43
Identity = 98/189 (51.85%), Postives = 123/189 (65.08%), Query Frame = 2
Query:  281 KRGFADTV---VDLKLNLSTKESGGIDVIQKTKG-----------KSASATGATDLSKPPAKAQVVGWPPVRSFRKNIMAVQ-KDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            KRGF+DT+    + K ++ T+++        T+            K  S+T     S P AKAQ+VGWPPVRS+RKN +A   K+++E D +          FVKVSMDGAPYLRKVDL+ Y +Y ELS AL KMF++FT+G CGS G   KD ++E+KL DLLNG DYV TYEDKDGDWMLVGDVPWE
Sbjct:  120 KRGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNIPKGQSSTTNNSSSPPAAKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGS----GALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWE 304          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.830e-41
Identity = 108/238 (45.38%), Postives = 132/238 (55.46%), Query Frame = 2
Query:  161 INFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNL----STKESGGIDVIQKTK------GKSASATGA--------TDLSKPPAKAQVVGWPPVRSFRKNIMAVQKDNEEGDN------KAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQG--MKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWE 796
            +NF+ATELRLGLP                           KR F+D + D    +    ST  +G +      +      GKS + T          +  + P +KAQVVGWPP+RSFRKN MA  +  + G+N      +A         +VKVSM+GAPYLRK+DLK YKSY ELS AL KMFS FTIG  GS G   +D +NES+L DLL GS+YV TYEDKD DWMLVGDVPWE
Sbjct:   38 LNFKATELRLGLPGSESPERVDSRFLALNKSSCPVSGA--KRVFSDAINDSNKWVFSPGSTTATGDVGSGSGPRTSVVKDGKSTTFTKPAVPVKEKKSSATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWE 273          
BLAST of FC877855 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.712e-39
Identity = 100/218 (45.87%), Postives = 125/218 (57.34%), Query Frame = 2
Query:  173 ATELRLGLP----XXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKESGGIDVIQKTKGKSASATGATDLSK---PPAKAQVVGWPPVRSFRKNIMAVQKDNEEG--DNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGNCGSQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPW 793
            ATELRLGLP                               KRGFAD +V        + +GG     K    +A A    +  K   P AKAQVVGWPP+RS+RKN MA+ +   +G  D +A         +VKVSMDGAPYLRKVDLK+YK+Y+ELS AL KMFS FT+G+  S G   +D +++ +L+DL NG++ V TYEDKD DWMLVGDVPW
Sbjct:   21 ATELRLGLPGTAEEAESEGGGGGGTDAAPLTLELLPKGGAKRGFADAIVGGPAGQRREAAGG-----KAAAAAAEAEEEEEKKKAQAPAAKAQVVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPW 233          
The following BLAST results are available for this feature:
BLAST of FC877855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IAA16_ARATH1.592e-6159.56Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
AUX28_SOYBN1.490e-5958.08Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]
IAA14_ARATH8.175e-5857.82Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
IAA7_ARATH3.435e-5655.00Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA30_ORYSJ5.132e-5251.20Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA17_ARATH1.545e-4852.78Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA8_ARATH5.144e-4445.71Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA9_ARATH4.355e-4351.85Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA27_ARATH1.830e-4145.38Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA21_ORYSJ1.712e-3945.87Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA27DH04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877855 ID=FC877855; Name=FC877855; organism=Citrus clementina; type=EST; length=902bp
CAAAAAAGAAAAAAAAAAACCAAAAGTACTACTCTCGATGCCCTCTCAAA
ACACAAACAAACCAACCAAAAAAAAAAAAAACAAGAGAGTGATAATTAAT
TAATTAAGAGAGGAGTTTAAGGAGTGTTTAGTGTGTAAATTTGAAAGTTT
CATTAAGATGATTAACTTCGAAGCGACGGAGCTTCGGCTAGGGTTACCGG
GCGGTAACGGCGGAAGCAGTGAAGGTGGTGGTGGTGGCGGCGGCGGTGAG
AAAGCCAAGAACAATAACATTAATGGCATGAAGAGAGGATTTGCAGACAC
CGTTGTTGATTTGAAGCTAAATCTTTCAACAAAAGAGTCAGGTGGGATTG
ATGTAATTCAGAAGACGAAGGGCAAAAGTGCTTCTGCTACTGGGGCTACA
GACCTTTCAAAGCCTCCGGCCAAGGCACAAGTTGTGGGTTGGCCACCCGT
TAGATCATTCAGAAAGAACATCATGGCCGTCCAAAAGGACAATGAAGAAG
GTGATAATAAGGCTAGCAGCAGCAGCAGCAGCAATGTAGCTTTTGTTAAA
GTGAGCATGGATGGTGCCCCATACTTGCGCAAGGTTGATTTGAAGCTATA
CAAAAGCTACCAAGAACTCTCTGATGCCCTTGGCAAAATGTTCAGCTCTT
TCACCATTGGTAACTGTGGGTCACAAGGGATGAAGGATTTTATGAATGAG
AGCAAACTGATTGATCTTTTGAATGGCTCAGATTATGTACCTACTTATGA
AGACAAAGATGGAGATTGGATGCTTGTTGGTGATGTACCATGGGAGTAAG
TTCATTCATTTCTATTGTGTTACATTAGAGTCAGTACAACCAATCTATAG
AATCATGACATGTATATAAAAACAGTCACGATGTCATGTGTTGATTGGTT
GC
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