FC877859

Overview
NameFC877859
Unique NameFC877859
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12707 contig Ccv1_Contig12707:4..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.631e-50
Identity = 116/217 (53.46%), Postives = 134/217 (61.75%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLXXXXXXXXXXXXXXXAPANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESXXXXXXXXXXXXXXXXXVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 757
            MK+FVKTL G++FEIEVKP DKVSDVK  IETV+G++ YPA++QMLIHQGKVLKD TTLEEN V ENSF+ V++               APA                                   S                  S  +DVYGQAASNLVAG+ LE+TVQQILDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q  +PPV
Sbjct:    1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFI-VIMLSKTKASPSGASTASAPA----------------PSATQPQTVATPQVSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPV 199          
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.204e-47
Identity = 107/215 (49.77%), Postives = 126/215 (58.60%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLXXXXXXXXXXXXXXXAPANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESXXXXXXXXXXXXXXXXXVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 751
            MK+ VKTLKG+ F+IEV    KV+DVK+ IET QG  +YPA QQMLIHQGKVLKD TTL+ENKV ENSF+V+ML               AP+N                                  +                 VSS +D YGQA SNLVAGSNLEAT+Q IL+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ  +P
Sbjct:    1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVA--------VSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIP 207          
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.176e-30
Identity = 62/74 (83.78%), Postives = 71/74 (95.95%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 328
            MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+EENKVAENSF+V+M+
Sbjct:    1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMM 74          

HSP 2 Score: 124.79 bits (312), Expect = 5.105e-28
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 2
Query:  542 VSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 757
            V S  DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+GIPEQ  VPPV
Sbjct:  167 VGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPV 238          
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.899e-23
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 2
Query:  554 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 751
            SD YGQAAS LV+GS++E  VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE   +P
Sbjct:  130 SDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIP 195          

HSP 2 Score: 97.0561 bits (240), Expect = 1.140e-19
Identity = 49/74 (66.22%), Postives = 54/74 (72.97%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 328
            MK+ VKTLKG+HFEI V P D +  VKKNIE  Q  D YP  QQ+LIH GKVLKD TTL ENKV E  F+VVML
Sbjct:    1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVML 74          
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 3.205e-22
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 2
Query:  554 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP 751
            +D YGQAAS LV+GS+LE  VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+  + AVP
Sbjct:  132 TDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVP 199          

HSP 2 Score: 98.2117 bits (243), Expect = 5.117e-20
Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 328
            MK+ VKTLKG+HFEI V P D +  VKKNIE  QG D YP  QQ+LIH GKVLKD T+L ENKV E  F+VVML
Sbjct:    1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVML 74          
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 33/74 (44.59%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 328
            M+V +KTL+   F+I++ PE+ V  +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+
Sbjct:    1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMV 74          
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 33/74 (44.59%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 328
            M+V +KTL+   F+I++ PE+ V  +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+
Sbjct:    1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMV 74          
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 33/74 (44.59%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 328
            M+V +KTL+   F+I++ PE+ V  +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+
Sbjct:    1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMV 74          
The following BLAST results are available for this feature:
BLAST of FC877859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RD23D_ARATH1.631e-5053.46Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RAD23_ORYSJ2.204e-4749.77Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23C_ARATH4.176e-3083.78Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23B_ARATH2.899e-2375.76Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23A_ARATH3.205e-2275.00Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_RAT1.949e-1144.59UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE1.949e-1144.59UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23B_HUMAN1.949e-1144.59UV excision repair protein RAD23 homolog B OS=Homo... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO01RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877859 ID=FC877859; Name=FC877859; organism=Citrus clementina; type=EST; length=759bp
ATATCTGATTTCGCTTTCTCAGTGAAAGTGATCGCCGGCGGTAGCCAGAG
AAGGGGTAATTTGCCGGAGAATCGGAGACTGTTCGAGGGAGTAAGTTTCG
GAGAAGATGAAGGTTTTCGTTAAGACTTTGAAGGGAACTCACTTCGAGAT
CGAAGTGAAGCCCGAAGACAAGGTTTCTGATGTAAAGAAGAATATAGAGA
CTGTACAGGGTTCTGATGTTTACCCTGCTTCACAGCAAATGCTTATTCAT
CAGGGGAAAGTTCTTAAGGATGTCACAACCCTGGAAGAAAACAAAGTTGC
TGAAAACAGTTTTGTTGTTGTCATGCTGACCAAGAGTAAGGTTTCATCAA
GTGGGGCCTCAACTGTTTCAGCTGCACCAGCAAATCAGGCCCAAACTACA
AGTTCTGCGCCTCCTACCTCGACACAACCTACGACTACATCTCAGACTCC
TGCACCAACTGTGGCACCGCCACAATCTGTCCCTGAATCTGCTCCTACTC
CTGCTGCTCCTGCTCCTGCTCCAGCTCCAGCTCCAGCTCCAGTCTCTTCA
GTATCAGATGTGTACGGCCAAGCTGCATCAAATCTTGTTGCAGGAAGTAA
TTTAGAAGCTACTGTCCAACAGATTCTTGATATGGGTGGAGGGAGTTGGG
ACCGAGAAACTGTTATTCGTGCTTTACGTGCTGCATATAACAACCCTGAA
AGAGCTGTTGAATATCTGTATTCTGGAATACCTGAGCAGACTGCAGTTCC
ACCTGTTGC
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