FC877860

Overview
NameFC877860
Unique NameFC877860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length896
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14092 contig Ccv1_Contig14092:31..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877860 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 2.113e-82
Identity = 152/259 (58.69%), Postives = 184/259 (71.04%), Query Frame = 1
Query:  124 FSSSLVDMGFPTKSIALK--KKPNKSLKVESALHSPSVLHFPKQPYQNPVITRQDSTAKPENKSNKSQGQTQQSQWNPLQRXXXXXXXXXXXXXVSRERQHPLPKTADPRVQISGNFAPVPEWPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRLLAMSEDDLPYQ 894
            F+ S +D   P+ S++    K   + L   S   +P++L+FP  P  NP+I  +D+                 S+WNPLQR             + RER  PLPKT DPR QISGN+APVPE  V+  L V G IP+CI+GVYLRNGANPLFEPV+GHH FDGDGMVHAV I NG ASY+CRFTET+RL+QE++LG P+FPKAIGELHGH+GI RL+LFYARGLFGL++HK GTGVANAGLVYF++RLLAMSEDDLPYQ
Sbjct:   18 FAPSDLDAPSPSSSVSFTNTKPRRRKLSANSVSDTPNLLNFPNYPSPNPIIPEKDT-----------------SRWNPLQRAASAALDFAETALLRRERSKPLPKTVDPRHQISGNYAPVPEQSVKSSLSVDGKIPDCIDGVYLRNGANPLFEPVSGHHLFDGDGMVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGIARLMLFYARGLFGLLNHKNGTGVANAGLVYFHDRLLAMSEDDLPYQ 259          
BLAST of FC877860 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.978e-80
Identity = 161/287 (56.10%), Postives = 183/287 (63.76%), Query Frame = 1
Query:   70 STTSPNSCSWGKSQILNPFSSSLVDMGFPTKSIALKKKPNKSLKVESALHSPSVLHFPKQPYQ-------------NPVITRQDSTAKPENKSNKSQGQTQQSQWNPLQRXXXXXXXXXXXXXVSRERQHPLPKTADPRVQISGNFAPVPEWPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRLLAMSEDDLPY 891
            +TT P+SCS       +PF         PT  +  KK+ + +    +   S   LH+PKQ YQ              P  T   +T   E K      Q    +WN LQ+             VS E +HPLPKTADP+VQI+GNFAPVPE      LPV G IP+CI+GVY+RNGANPL+EPVAGHHFFDGDGMVHAV   NG+ASYACRFTETQRL QE+ LGRPVFPKAIGELHGH+GI RLLLFYAR LF LVD   G GVANAGLVYFNN LLAMSEDDLPY
Sbjct:   11 NTTLPSSCS-------SPFKDLASTSSSPTTLLPFKKRSSSNTNTITC--SLQTLHYPKQ-YQPTSTSTTTTPTPIKPTTTTTTTTPHRETKPLSDTKQPFPQKWNFLQKAAATGLDMVETALVSHESKHPLPKTADPKVQIAGNFAPVPEHAADQALPVVGKIPKCIDGVYVRNGANPLYEPVAGHHFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSGIARLLLFYARSLFQLVDGSHGMGVANAGLVYFNNHLLAMSEDDLPY 287          
BLAST of FC877860 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 3.374e-80
Identity = 158/276 (57.25%), Postives = 182/276 (65.94%), Query Frame = 1
Query:   70 STTSPNSCSW-GKSQILNPFSSSLVDMGFPTKSIALKKKPNKSLKVESALHSPSVLHFPKQPYQNPVITRQDSTAKPENKSNKSQGQTQQSQWNPLQRXXXXXXXXXXXXXVSRERQHPLPKTADPRVQISGNFAPVPEWPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRLLAMSEDDLPYQ 894
            + T+  S  W G +    P SSS         S+ +  +  + L V SALH+P  LHFPKQ   +P I       KP+ K + ++      Q N  QR             VS E+ HPLPKTADP VQI+GNFAPV E PVR  LPV G +P+ I GVY+RNGANPL EPV GHHFFDGDGMVHAV   +GSASYACRFT+T R +QER+LGRPVFPKAIGELHGH GI RL+LFYAR   G+VD   GTGVANAGLVYFN RLLAMSEDDLPYQ
Sbjct:    5 TATAAVSGRWLGGNHTQPPLSSSQSSDLSYCSSLPMASRVTRKLNVSSALHTPPALHFPKQSSNSPAIV-----VKPKAKESNTK------QMNLFQRAAAAALDAAEGFLVSHEKLHPLPKTADPSVQIAGNFAPVNEQPVRRNLPVVGKLPDSIKGVYVRNGANPLHEPVTGHHFFDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTGIARLMLFYARAAAGIVDPAHGTGVANAGLVYFNGRLLAMSEDDLPYQ 269          
BLAST of FC877860 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 5.217e-73
Identity = 127/165 (76.97%), Postives = 147/165 (89.09%), Query Frame = 1
Query:  400 VSRERQHPLPKTADPRVQISGNFAPVPEWPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRLLAMSEDDLPYQ 894
            +S E+  PLPKTADPRVQI+GN++PVPE  VR  L V G+IP+CI+GVY+RNGANP+FEP AGHH FDGDGMVHAV I NGSASYACRFT+T+RL+QE+ LGRPVFPKAIGELHGH+GI RL+LFYARGL GL++++ G GVANAGLVYFNNRLLAMSEDDLPYQ
Sbjct:   88 ISHEQDSPLPKTADPRVQIAGNYSPVPESSVRRNLTVEGTIPDCIDGVYIRNGANPMFEPTAGHHLFDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSGIARLMLFYARGLCGLINNQNGVGVANAGLVYFNNRLLAMSEDDLPYQ 252          
BLAST of FC877860 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 2.192e-71
Identity = 142/236 (60.17%), Postives = 158/236 (66.95%), Query Frame = 1
Query:  187 NKSLKVESALHSPSVLHFPKQPYQNPVITRQDSTAKPENKSNKSQGQTQQSQWNPLQRXXXXXXXXXXXXXVSRERQ-HPLPKTADPRVQISGNFAPVPEWPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRLLAMSEDDLPY 891
            NK   V S+L SP+      +   N V      T              Q  + NP+QR             +S ER+ HP PKTADP VQI+GNF PVPE PV H LPVTG++PECI GVY+RNGANPL +PV+GHH FDGDGMVHAV   NGS SYACRFTET RL+QERE GRPVFPKAIGELHGH GI +L+LF  RGLFGLVD   G GVANAGLVYFN  LLAMSEDDLPY
Sbjct:  105 NKKSSVSSSLQSPTFKPPSWKKLCNDVTNLIPKTTN------------QNPKLNPVQRTAAMVLDAVENAMISHERRRHPHPKTADPAVQIAGNFFPVPEKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLFGLVDPTGGLGVANAGLVYFNGHLLAMSEDDLPY 328          
BLAST of FC877860 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 2.347e-65
Identity = 139/249 (55.82%), Postives = 161/249 (64.66%), Query Frame = 1
Query:  157 TKSIALKKKPNKSLKVESALHSPSVLHFPKQPYQNPVITRQDST-AKPENKSNKSQGQTQQSQWNPLQRXXXXXXXXXXXXXVSR--ERQHPLPKTADPRVQISGNFAPVPEWPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSA-SYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRLLAMSEDDLPY 891
            + S+    +   S+     L +P    F K     P  +R+ +  A P + +   + +  + Q N  QR             V+   ER H LP TADP VQI+GNFAPV E P  H LPV+G IP  I+GVY RNGANP F+PVAGHH FDGDGMVHA+ I NG+A SYACRFTET RL QER +GRPVFPKAIGELHGH+GI RL LFYAR   GLVD   GTGVANAGLVYFN RLLAMSEDDLPY
Sbjct:   25 SNSVRFSPRAVSSVPPAECLQAP----FHKPVADLPAPSRKPAAIAVPGHAAAPRKAEGGKKQLNLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPY 269          
BLAST of FC877860 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.021e-60
Identity = 110/166 (66.27%), Postives = 131/166 (78.92%), Query Frame = 1
Query:  400 VSRERQHPLPKTADPRVQISGNFAPVPEWPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIG-NGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRLLAMSEDDLPYQ 894
            +  E+  PLPK  DP VQ+SGNFAPV E PV++GL V G IP C+ GVY+RNGANP+F P+AGHH FDGDGM+HAV+IG +   SY+CR+T+T RL+QE  LGR VFPK IGELHGH+G+ RL LF AR   GLVD  +G GVANAG+V+FN RLLAMSEDDLPYQ
Sbjct:   83 IPMEQNRPLPKPTDPAVQLSGNFAPVNECPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLALFTARAGIGLVDGTRGMGVANAGVVFFNGRLLAMSEDDLPYQ 248          
BLAST of FC877860 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.835e-32
Identity = 70/150 (46.67%), Postives = 92/150 (61.33%), Query Frame = 1
Query:  442 PRVQISGNFAPVPEWPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRLLAMSEDDLPY 891
            P   ++GNF PV E P    LPV G +P+C+NG ++R G NP F PVAG+H+FDGDGM+H + I +G A+Y  RF ET RL QE   GR  F K IG+L G  G+  + +   R    ++D   G G  N  LVY + +LLA+SE D PY
Sbjct:   47 PHHYLTGNFGPVTETPPTKDLPVKGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMK-IGDLKGLFGLLMVNIHMLRTKLKVLDLSYGGGTTNTALVYHHGKLLALSEADKPY 195          
BLAST of FC877860 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.437e-30
Identity = 69/147 (46.94%), Postives = 92/147 (62.59%), Query Frame = 1
Query:  454 ISGNFAPV-PEWPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRLLAMSEDDLPY 891
            +SGNFAPV  E P    LPV G +PEC+NG ++R G NP F PVAG+H+FDGDGM+H + I +G A+YA R+ +T RL QE     P F K IG+L G  G+  + +   R    ++D   G G  N  L+Y + +LLA+SE D PY
Sbjct:   52 LSGNFAPVVDETPPCPDLPVRGHLPECLNGEFVRVGPNPKFMPVAGYHWFDGDGMIHGMRIKDGKATYASRYVKTSRLKQEEYFEGPKFMK-IGDLKGFFGLFMVQMQLLRAKLKVIDVSYGVGTGNTALIYHHGKLLALSEADKPY 197          
BLAST of FC877860 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.217e-29
Identity = 69/151 (45.70%), Postives = 93/151 (61.59%), Query Frame = 1
Query:  442 PRVQISGNFAPV-PEWPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRLLAMSEDDLPY 891
            P   +SGNFAP+  E P    LPV G +PEC+NG ++R G NP F+ VAG+H+FDGDGM+H V I +G A+Y  R+ +T RL QE   G   F K IG+L G  G+  + +   R    ++D+  G G AN  LVY + +LLA+ E D PY
Sbjct:   44 PLHYLSGNFAPIRDETPPVKDLPVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMK-IGDLKGFFGLLMVNVQQLRTKLKILDNTYGNGTANTALVYHHGKLLALQEADKPY 193          
The following BLAST results are available for this feature:
BLAST of FC877860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NCED5_ARATH2.113e-8258.69Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED1_PHAVU1.978e-8056.109-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
NCED3_ARATH3.374e-8057.259-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED2_ARATH5.217e-7376.979-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]
NCED9_ARATH2.192e-7160.179-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED1_MAIZE2.347e-6555.829-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
NCED6_ARATH1.021e-6066.279-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
CCD1_PHAVU5.835e-3246.67Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA1.437e-3046.94Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
CCD1_ARATH1.217e-2945.70Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA53BF12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA53BF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877860 ID=FC877860; Name=FC877860; organism=Citrus clementina; type=EST; length=896bp
CTATAGTCTAAACAATACACCAAACACAAAACTTTCTCCCCAGTCTTGTG
CCATATAGCCATGGCTGCTTCTACTACATCACCCAACTCTTGTAGTTGGG
GTAAATCTCAAATTCTTAACCCATTCTCTTCATCTTTGGTTGACATGGGC
TTCCCAACGAAGTCCATAGCCTTGAAGAAGAAGCCCAATAAATCCTTGAA
AGTAGAATCTGCCTTACACTCTCCTTCAGTTCTTCATTTCCCTAAACAGC
CTTACCAGAATCCTGTAATTACCAGACAGGACTCTACAGCAAAACCCGAA
AACAAGAGCAACAAAAGCCAAGGACAAACACAGCAATCACAATGGAATCC
CCTCCAAAGAGCCGCTGCCATGGCCTTGGACATGGCGGAGAACGCGTTGG
TCTCACGAGAGCGCCAACACCCACTTCCCAAAACAGCCGACCCACGTGTC
CAAATTAGCGGTAACTTCGCTCCGGTGCCGGAATGGCCCGTCCGGCATGG
TCTCCCAGTCACTGGCTCCATCCCCGAATGCATCAACGGCGTTTACCTCC
GCAACGGTGCCAACCCATTATTCGAGCCGGTTGCCGGTCACCATTTCTTT
GACGGTGACGGCATGGTCCATGCAGTCACCATCGGAAACGGAAGCGCAAG
TTACGCTTGTCGTTTCACAGAGACACAGAGATTAATGCAGGAGAGAGAAT
TAGGGCGTCCTGTTTTTCCAAAAGCAATAGGCGAATTACACGGACACAAT
GGTATTGGGCGTCTCTTGCTTTTCTACGCAAGAGGATTGTTCGGACTCGT
TGATCATAAACAAGGCACTGGTGTGGCAAACGCTGGCTTAGTTTACTTCA
ATAACAGGCTTTTAGCAATGTCCGAAGATGATCTTCCATACCAAGT
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