FC877865

Overview
NameFC877865
Unique NameFC877865
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length836
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877865 vs. ExPASy Swiss-Prot
Match: ACO1_AJECA (Acyl-CoA desaturase OS=Ajellomyces capsulata GN=OLE1 PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.174e-78
Identity = 134/199 (67.34%), Postives = 160/199 (80.40%), Query Frame = 2
Query:  239 SQPSAASKPHPQEPVRNKAYDPKKPHITETPMTKKNWYKHVNWLNVILIVGIPMCGLVAAYWTPLYLKTAIWSVAFYFATGLGITAGYHRLWAHTSYSASLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTDKDPYSVRKGLLYSHFGWMLMKQNPKRIGRTDISDLNDDAVVVWQHKNYLKVVLFMGLIFPTLV 835
            ++ +A  K    +  R    +PKK HIT+TP+T  NW+KH++WLNV LI+ IP+ GLV AYW PL+LKTA+W+V +YF TGLGITAGYHRLWAH SYSA+LPLKI+LAAVGGGAVEGSI            YTDTDKDPYSVRKGLLYSH GWM+MKQNPKRIGRT+I+DLN+D VVVWQH+NYLKVV+FMG++FP LV
Sbjct:   13 AETAAGGKDVVTDAARRPNSEPKKVHITDTPITLANWHKHISWLNVTLIIAIPIYGLVQAYWVPLHLKTALWAVVYYFMTGLGITAGYHRLWAHCSYSATLPLKIYLAAVGGGAVEGSIRWWARGHRAHHRYTDTDKDPYSVRKGLLYSHIGWMVMKQNPKRIGRTEITDLNEDPVVVWQHRNYLKVVIFMGIVFPMLV 211          
BLAST of FC877865 vs. ExPASy Swiss-Prot
Match: ACO1_SCHPO (Probable acyl-CoA desaturase OS=Schizosaccharomyces pombe GN=SPCC1281.06c PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.421e-53
Identity = 101/219 (46.12%), Postives = 137/219 (62.56%), Query Frame = 2
Query:  182 MPSHQPVAGMSAVDPAYLSSQPSAASKPHPQEP-VRNKAYDPKKP-HITETPMTKKNWYKHVNWLNVILIVGIPMCGLVAAYWTPLYLKTAIWSVAFYFATGLGITAGYHRLWAHTSYSASLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTDKDPYSVRKGLLYSHFGWMLMKQNPKRIGRTDISDLNDDAVVVWQHKNYLKVVLFMGLIFPTL 832
            M +    A  SA          S   +  P  P V  + +DPK P HI E P T +NW++H+NWL+ +LI G+PM  +   + TPL  KT I+++ +Y  +GLGITAGYHRLW+H +Y A  PL+ FLAA G  A EGSI            YTDTDKDPY+V+KG  Y+H GWM++ QNP+RIGR+D+SDLN D  V++ H+++L +  FM  IFP+L
Sbjct:    1 MTAPSATAFSSATTQPTTEGNASMRKRTIPVVPSVPERKWDPKAPKHIQEQPWTMQNWWRHLNWLHCMLIFGLPMIAIYGVFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGWMIILQNPRRIGRSDVSDLNSDPFVMFNHRHFLPIASFMAFIFPSL 219          
BLAST of FC877865 vs. ExPASy Swiss-Prot
Match: ACO1_YEAST (Acyl-CoA desaturase 1 OS=Saccharomyces cerevisiae GN=OLE1 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.576e-44
Identity = 83/178 (46.63%), Postives = 114/178 (64.04%), Query Frame = 2
Query:  308 KPHITETPMTKKNWYKHVNWLNVILIVGIPMCGLVAAYW--TPLYLKTAIWSVAFYFATGLGITAGYHRLWAHTSYSASLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTDKDPYSVRKGLLYSHFGWMLMKQNPKRIGRTDISDLNDDAVVVWQHKNYLKVVLFMGLIFPTLV 835
            K HI+E P T  NW++H+NWLN++L+ G+PM G   A     PL+L   ++SV +Y   G+ ITAGYHRLW+H SYSA  PL++F A  G  +VEGS             YTDT +DPY  R+GL YSH GWML+K NPK   R DI+D+ DD  + +QH++Y+ ++L    + PTL+
Sbjct:   94 KIHISEQPWTLNNWHQHLNWLNMVLVCGMPMIGWYFALSGKVPLHLNVFLFSVFYYAVGGVSITAGYHRLWSHRSYSAHWPLRLFYAIFGCASVEGSAKWWGHSHRIHHRYTDTLRDPYDARRGLWYSHMGWMLLKPNPKYKARADITDMTDDWTIRFQHRHYILLMLLTAFVIPTLI 271          
BLAST of FC877865 vs. ExPASy Swiss-Prot
Match: ACOD1_MOUSE (Acyl-CoA desaturase 1 OS=Mus musculus GN=Scd1 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.808e-24
Identity = 63/196 (32.14%), Postives = 105/196 (53.57%), Query Frame = 2
Query:  260 KPHPQEPVRNKAYDPKKPHITETPMTKKNWYKHVNWLNVILIVGIPMCGLVAAYWTP-LYLKTAIWSVAFYFATGLGITAGYHRLWAHTSYSASLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTDKDPYSVRKGLLYSHFGWMLMKQNP---KRIGRTDISDLNDDAVVVWQHKNYLKVVLFMGLIFPTLV 835
            +P  +E + +  Y  +     E P  K  +     W N+IL+V + + GL      P   L T ++ + +Y  + LGITAG HRLW+H +Y A LPL+IFL      A +  +            +++T  DP++ R+G  +SH GW+L++++P   ++ G+ D+SDL  + +V++Q + Y   +L M  I PTLV
Sbjct:   43 RPEMKEDIHDPTYQDE-----EGPPPKLEYV----WRNIILMVLLHLGGLYGIILVPSCKLYTCLFGIFYYMTSALGITAGAHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYYKPGLLLMCFILPTLV 229          
BLAST of FC877865 vs. ExPASy Swiss-Prot
Match: ACOD_HUMAN (Acyl-CoA desaturase OS=Homo sapiens GN=SCD PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 8.973e-24
Identity = 65/189 (34.39%), Postives = 100/189 (52.91%), Query Frame = 2
Query:  281 VRNKAYDPKKPHITETPMTKKNWYKHVNWLNVILIVGIPMCGLVAAYWTPLY-LKTAIWSVAFYFATGLGITAGYHRLWAHTSYSASLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTDKDPYSVRKGLLYSHFGWMLMKQNP--KRIGRT-DISDLNDDAVVVWQHKNYLKVVLFMGLIFPTLV 835
            +++  YDP      E P  K  +     W N+IL+  + +  L      P     T +W V +YF + LGITAG HRLW+H SY A LPL++FL      A +  +            +++T  DP++ R+G  +SH GW+L++++P  K  G T D+SDL  + +V++Q + Y   +L M  I PTLV
Sbjct:   50 IKDDIYDPTYKD-KEGPSPKVEYV----WRNIILMSLLHLGALYGITLIPTCKFYTWLWGVFYYFVSALGITAGAHRLWSHRSYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGSTLDLSDLEAEKLVMFQRRYYKPGLLMMCFILPTLV 233          
BLAST of FC877865 vs. ExPASy Swiss-Prot
Match: ACOD1_RAT (Acyl-CoA desaturase 1 OS=Rattus norvegicus GN=Scd1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.531e-23
Identity = 61/196 (31.12%), Postives = 104/196 (53.06%), Query Frame = 2
Query:  260 KPHPQEPVRNKAYDPKKPHITETPMTKKNWYKHVNWLNVILIVGIPMCGLVAAYWTPLY-LKTAIWSVAFYFATGLGITAGYHRLWAHTSYSASLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTDKDPYSVRKGLLYSHFGWMLMKQNP---KRIGRTDISDLNDDAVVVWQHKNYLKVVLFMGLIFPTLV 835
            +P  +E + + +Y  +     E P  K  +     W N+IL+  + +  L      P   + T +W + +Y  + LGITAG HRLW+H +Y A LPL+IFL      A +  +            +++T  DP++ R+G  +SH GW+L++++P   ++ G+ D+SDL  + +V++Q + Y   +L M  I PTLV
Sbjct:   46 RPEMREDIHDPSYQDE-----EGPPPKLEYV----WRNIILMALLHVGALYGITLIPSSKVYTLLWGIFYYLISALGITAGAHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYYKPGLLLMCFILPTLV 232          
BLAST of FC877865 vs. ExPASy Swiss-Prot
Match: SCD5_BOVIN (Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.999e-23
Identity = 62/164 (37.80%), Postives = 88/164 (53.66%), Query Frame = 2
Query:  365 WLNVILIVGIPMCGLVAAYWTPLYLK----TAIWSVAFYFATGLGITAGYHRLWAHTSYSASLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTDKDPYSVRKGLLYSHFGWMLMKQNPKRI---GRTDISDLNDDAVVVWQHKNYLKVVLFMGLIFPTLV 835
            W NV L+    +  L A Y   L  K    T +W+   +  T LG+TAG HRLW+H SY A LPL+IFLAA    A +  I            Y++TD DP++ R+G  +SH GW+ ++++   I    + D++DL  D VV +Q K Y   V+ M  + PTLV
Sbjct:   52 WRNVFLM---SLLHLAAVYSLVLIPKAQPLTLLWAYFCFLLTALGVTAGAHRLWSHRSYKAKLPLRIFLAAANSMAFQNDIFEWSRDHRVHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEKGRKLDVTDLLADPVVRFQRKYYKITVVLMCFVVPTLV 212          
BLAST of FC877865 vs. ExPASy Swiss-Prot
Match: ACOD_PIG (Acyl-CoA desaturase (Fragment) OS=Sus scrofa GN=SCD PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.999e-23
Identity = 62/214 (28.97%), Postives = 109/214 (50.93%), Query Frame = 2
Query:  206 GMSAVDPAYLSSQPSAASKPHPQEPVRNKAYDPKKPHITETPMTKKNWYKHVNWLNVILIVGIPMCGLVAAYWTPLY-LKTAIWSVAFYFATGLGITAGYHRLWAHTSYSASLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTDKDPYSVRKGLLYSHFGWMLMKQNP---KRIGRTDISDLNDDAVVVWQHKNYLKVVLFMGLIFPTLV 835
            G S   P Y+        +P  ++ + +  Y  K     E P  K  +     W N+IL+  + +  L      P   + T +W+ A+Y  + +G+TAG HRLW+H +Y A LPL++FL      A +  +            +++TD DP++ R+G  +SH GW+L++++P   ++ G  ++SDL  + +V++Q + Y   +L M  I PT+V
Sbjct:   22 GKSEKTPQYVEED----IRPEMKDDIYDPTYQDK-----EGPQGKLEYV----WRNIILMSLLHLGALYGIILIPTCKIYTLLWAFAYYLLSAVGVTAGAHRLWSHRTYKARLPLRVFLIIANTMAFQNDVYEWARDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGLLNMSDLKAEKLVMFQRRYYKPGILLMCFILPTIV 222          
BLAST of FC877865 vs. ExPASy Swiss-Prot
Match: ACOD_SHEEP (Acyl-CoA desaturase OS=Ovis aries GN=SCD PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.453e-23
Identity = 63/189 (33.33%), Postives = 101/189 (53.44%), Query Frame = 2
Query:  281 VRNKAYDPKKPHITETPMTKKNWYKHVNWLNVILIVGIPMCGLVAAYWTPLY-LKTAIWSVAFYFATGLGITAGYHRLWAHTSYSASLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTDKDPYSVRKGLLYSHFGWMLMKQNP--KRIGRT-DISDLNDDAVVVWQHKNYLKVVLFMGLIFPTLV 835
            +R+  YDP      E P  K  +     W N+IL+  + +  L      P   + T +W + +Y  + LGITAG HRLW+H +Y A LPL++FL      A +  +            +++TD DP++ R+G  +SH GW+L++++P  +  G T D+SDL  + +V++Q + Y   VL +  I PTLV
Sbjct:   50 MRDDIYDPNYQD-KEGPKPKLEYV----WRNIILMGLLHLGALYGITLIPTCKIYTFLWVLFYYVISALGITAGVHRLWSHRTYKARLPLRVFLIIANTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVREKGATLDLSDLRAEKLVMFQRRYYKPGVLLLCFILPTLV 233          
BLAST of FC877865 vs. ExPASy Swiss-Prot
Match: ACOD_CAPHI (Acyl-CoA desaturase OS=Capra hircus GN=SCD PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.453e-23
Identity = 63/189 (33.33%), Postives = 101/189 (53.44%), Query Frame = 2
Query:  281 VRNKAYDPKKPHITETPMTKKNWYKHVNWLNVILIVGIPMCGLVAAYWTPLY-LKTAIWSVAFYFATGLGITAGYHRLWAHTSYSASLPLKIFLAAVGGGAVEGSIXXXXXXXXXXXXYTDTDKDPYSVRKGLLYSHFGWMLMKQNP--KRIGRT-DISDLNDDAVVVWQHKNYLKVVLFMGLIFPTLV 835
            +R+  YDP      E P  K  +     W N+IL+  + +  L      P   + T +W + +Y  + LGITAG HRLW+H +Y A LPL++FL      A +  +            +++TD DP++ R+G  +SH GW+L++++P  +  G T D+SDL  + +V++Q + Y   VL +  I PTLV
Sbjct:   50 MRDDIYDPTYQD-KEGPKPKLEYV----WRNIILMGLLHLGALYGITLIPTCKIYTFLWVLFYYMMSALGITAGVHRLWSHRTYKARLPLRVFLIIANTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVREKGATLDLSDLRAEKLVMFQRRYYKPGVLLLCFILPTLV 233          
The following BLAST results are available for this feature:
BLAST of FC877865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ACO1_AJECA2.174e-7867.34Acyl-CoA desaturase OS=Ajellomyces capsulata GN=OL... [more]
ACO1_SCHPO2.421e-5346.12Probable acyl-CoA desaturase OS=Schizosaccharomyce... [more]
ACO1_YEAST4.576e-4446.63Acyl-CoA desaturase 1 OS=Saccharomyces cerevisiae ... [more]
ACOD1_MOUSE1.808e-2432.14Acyl-CoA desaturase 1 OS=Mus musculus GN=Scd1 PE=2... [more]
ACOD_HUMAN8.973e-2434.39Acyl-CoA desaturase OS=Homo sapiens GN=SCD PE=1 SV... [more]
ACOD1_RAT1.531e-2331.12Acyl-CoA desaturase 1 OS=Rattus norvegicus GN=Scd1... [more]
SCD5_BOVIN1.999e-2337.80Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE... [more]
ACOD_PIG1.999e-2328.97Acyl-CoA desaturase (Fragment) OS=Sus scrofa GN=SC... [more]
ACOD_SHEEP4.453e-2333.33Acyl-CoA desaturase OS=Ovis aries GN=SCD PE=2 SV=1[more]
ACOD_CAPHI4.453e-2333.33Acyl-CoA desaturase OS=Capra hircus GN=SCD PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877865 ID=FC877865; Name=FC877865; organism=Citrus clementina; type=EST; length=836bp
CCTCCACCACCCTCTCCCCTACCAACAGGGTGCTCCTCCTCTCACGCCAA
CCCCCAGACTCTCGTTACCACCGAGAGCCATCAAGCAGACATAACAGGTA
GCCTTTGCTCACCTGTCTGCTGTCGACCGACACCCGAGGAGCCAATTTCG
CGGCACATAAACACTTCTACCTTACCACACGATGCCTTCGCATCAGCCTG
TTGCCGGCATGTCCGCCGTGGACCCGGCCTACCTCTCCAGCCAGCCTTCG
GCTGCGTCCAAGCCTCACCCGCAAGAGCCCGTCAGGAACAAGGCCTACGA
TCCCAAGAAGCCTCACATCACTGAGACCCCGATGACGAAGAAGAACTGGT
ACAAGCACGTCAACTGGCTTAATGTCATCCTCATCGTTGGCATTCCCATG
TGCGGTCTCGTCGCTGCCTACTGGACACCTCTCTACCTGAAGACTGCCAT
CTGGTCCGTCGCCTTCTACTTCGCCACTGGCCTCGGTATCACCGCTGGTT
ACCACCGTCTGTGGGCACACACTTCCTACTCCGCTAGCCTTCCGCTCAAG
ATCTTCCTCGCTGCTGTTGGTGGCGGTGCCGTTGAAGGTTCCATCAGATG
GTGGGCCCGCGACCACCGCGCTCACCACCGCTACACCGACACCGACAAGG
ACCCCTACAGCGTCAGGAAGGGTCTTCTCTACTCTCACTTCGGCTGGATG
CTTATGAAGCAGAACCCTAAGCGCATTGGCCGCACCGACATCTCCGATCT
CAACGATGATGCCGTCGTTGTCTGGCAGCACAAGAACTACCTCAAGGTCG
TTCTCTTCATGGGTCTGATCTTCCCGACTCTTGTTG
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