FC877868

Overview
NameFC877868
Unique NameFC877868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length907
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5254 contig Ccv1_Contig5254:1..907. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877868 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.324e-14
Identity = 50/153 (32.68%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  101 DIQIHVNGHQTFFLNEQTITKYSERLKKIIKQESRR-----VIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGLVDKFICALLAKIAQHSDL 544
            DI + V G  +F L++  +   S  +++ I + S+      +IEI   PGG   FELV++FCY   ++++T SNV  L C +  L MT+      NL+ QTE+F   +   SW D I +L SC+ + +YA    +  K I +L  + +   +L
Sbjct:   29 DIVVEV-GEMSFHLHKFPLLSRSGVMERRIAEASKEGDDKCLIEISDLPGGDKTFELVAKFCYGV-KLELTASNVVYLRCAAEHLEMTEE-HGEGNLISQTETFFNQVVLKSWKDSIKALHSCDEVLEYADELNITKKCIESLAMRASTDPNL 178          
BLAST of FC877868 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.804e-12
Identity = 50/144 (34.72%), Postives = 73/144 (50.69%), Query Frame = 2
Query:  101 DIQIHVNGHQTFFLNEQTITKYSERLKKII---KQESRRVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGLVDKFICALLAK 523
            D+ + V G   F L++  +   S  ++K+I   K      I +   PGGP  FE  ++FCY     +ITV NV+ LHC + FL MTD     NNL  +T+ FL  +   S S  I  LKSCE +   +   G+V + +  + AK
Sbjct:   33 DVVVEV-GEANFSLHKFMLVAKSNYIRKLIMESKDSDVTRINLSDIPGGPEIFEKAAKFCYGVN-FEITVQNVAALHCAAEFLQMTDKYCD-NNLAGRTQDFLSQVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVDVVGAK 173          
BLAST of FC877868 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.077e-12
Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 2
Query:  122 GHQTFFLNEQTITKYSERLKKIIKQESR----RVIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGLV 493
            G   F L++  +   S ++ ++I  ESR     ++ +   PGGP  FEL S+FCY    + +T +N+S L C + +L MT+ +    NL+ +TE+FL  +   SW D I  LKSCE +  +A +  +V
Sbjct:   60 GDMNFHLHKYPLLSRSGKMNRLI-YESRDPDPTILILDDLPGGPEAFELASKFCYGVP-VDLTATNISGLRCAAEYLEMTEDLEE-GNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIV 184          
BLAST of FC877868 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.605e-11
Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  122 GHQTFFLNEQTITKYSERLKKIIKQESRR------------VIEIKGFPGGPTGFELVSRFCYNNGRIKITVSNVSILHCCSIFLGMTDTVSSTNNLLQQTESFLEGMFYWSWSDIIASLKSCESIFKYAYSCGLV 493
            G   F+L++  +   S R+ + + + S              V+E+   PGG   FEL +RF Y    + +T +N+S L C + +L MT+ +    NL+ +TE+FL  +   SW D IA LKSCE++  +A +  +V
Sbjct:   58 GDVNFYLHKYPMISRSGRMSRAVYESSAADEAEADAAAAVAVVEMGDLPGGAGSFELAARFSYGMA-VDLTAANISGLRCAAEYLEMTEEMEE-GNLIFKTEAFLSYVVLSSWRDSIAVLKSCEALSPWAENLQIV 191          
The following BLAST results are available for this feature:
BLAST of FC877868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
Y1044_ARATH7.324e-1432.68BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
RPT2_ARATH1.804e-1234.72Root phototropism protein 2 OS=Arabidopsis thalian... [more]
RPT3_ARATH3.077e-1234.38Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ2.605e-1131.62Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA49BE02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877868 ID=FC877868; Name=FC877868; organism=Citrus clementina; type=EST; length=907bp
ACCCCATTGAGTGTTCGTTTCTCAAAAAGAAAGCGAGAGAAAAAAACTAG
ATTCCTTGGTTTCATTCTATGCAAATTAAGCAGCAATGTCTCAGCTCTGT
GATATCCAAATCCATGTCAATGGTCACCAAACATTCTTTCTCAATGAGCA
AACTATCACAAAATATTCGGAAAGGCTGAAGAAGATCATCAAACAAGAAA
GCAGAAGAGTCATTGAAATCAAAGGATTCCCTGGTGGCCCAACTGGGTTT
GAGCTGGTTTCAAGATTCTGTTACAACAATGGAAGAATCAAAATCACAGT
GTCTAATGTGTCGATCCTCCATTGTTGCTCAATCTTTCTTGGTATGACTG
ATACGGTATCATCAACAAACAATCTCTTGCAGCAGACAGAGTCGTTTCTT
GAAGGAATGTTTTATTGGTCATGGAGTGACATAATTGCTAGTCTCAAGAG
TTGTGAATCAATCTTTAAATATGCATATTCATGTGGTCTTGTAGATAAAT
TTATTTGTGCATTGTTAGCAAAGATTGCTCAGCATTCAGATTTAAGCCTC
ATTATTGCCTCACCATCAACTCCTTCCTCTTCCTCGTCTCCTGAAACTTC
ATATGGGTGTAGATTCTCCTGTACTTCAACCAAAACCACCCCAGAATCAA
TAATCAAGCCATCATGTTCATCATCACCATCACCAAGCAAAGCGTGGTGG
TTTGATGATTTGACAATTCTATCGCCAGTCATTATAGAGAAAATCAGCAA
GGGGTTGGGGGCTTACGGGGCTGAAAATAACAGCTTAATCCTAACAAGAT
TCCTTCTTCATTATCTAAAAGGTTGTGTTCAAGCTCAGAGCAAAGGCGGG
GGCTATGGTGGCAATGGCAGCTACAGTGGTCTTGCTGACACAGCTGTTCA
TGGGGTC
back to top