FC877869

Overview
NameFC877869
Unique NameFC877869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length896
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3465 contig Ccv1_Contig3465:1..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877869 vs. ExPASy Swiss-Prot
Match: CNOT1_XENTR (CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis GN=cnot1 PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.907e-91
Identity = 165/296 (55.74%), Postives = 211/296 (71.28%), Query Frame = 1
Query:   13 RARDYDDPPGLQDKTENLLREWRNVLLTPLTEIEVNQNFSLYVHRMNLNGILKSDDLITRFFRIATQMCIENVYQLVNEDRMNPP--PAVKREKYYAMCDSFIKLVTLLIKNTSDGGXXXXXXXXXXXXXXXXXAGCLLQDHEEHGTNFQQLPYHRMLLILFLDMNMPEPVLESMNFQVLTAFCHTLKIIRPSVAPGFCYAWLELVAHRAFINRLLAVTPQQKGWGMYSTLLIDLFKYLDPFLRNTELATPVMVLYKGTLKVLLVLLYDFPEFLCDYHYGFCDEILSNCIQMRNLI 894
            +A +YDDPPGL++K E LLREW N+  +     +  + FS +V +M+  GILK+DDLITRFFR+ T+MC+E  Y+   E + NP   P + R K Y   D+F++L+ LL+K++ +                    G LLQDHE   + FQQLPYHR+ ++L L++N PE VLE++NFQ LTAFC+T  I+RP+ APGF YAWLEL++HR FI R+LA TPQQKGW MY+ LLIDLFKYL PFLRN EL  P+ +LYKGTL+VLLVLL+DFPEFLCDYHYGFCD I  NCIQ+RNLI
Sbjct: 1850 QASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEA-TNTVTKINLLNKVLGIVVGVLLQDHEVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLI 2144          
BLAST of FC877869 vs. ExPASy Swiss-Prot
Match: CNOT1_MOUSE (CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1 PE=1 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 4.248e-91
Identity = 164/296 (55.41%), Postives = 211/296 (71.28%), Query Frame = 1
Query:   13 RARDYDDPPGLQDKTENLLREWRNVLLTPLTEIEVNQNFSLYVHRMNLNGILKSDDLITRFFRIATQMCIENVYQLVNEDRMNPP--PAVKREKYYAMCDSFIKLVTLLIKNTSDGGXXXXXXXXXXXXXXXXXAGCLLQDHEEHGTNFQQLPYHRMLLILFLDMNMPEPVLESMNFQVLTAFCHTLKIIRPSVAPGFCYAWLELVAHRAFINRLLAVTPQQKGWGMYSTLLIDLFKYLDPFLRNTELATPVMVLYKGTLKVLLVLLYDFPEFLCDYHYGFCDEILSNCIQMRNLI 894
            +A +YDDPPGL++K E LLREW N+  +     +  + FS +V +M+  GILK+DDLITRFFR+ T+MC+E  Y+   E + NP   P + R K Y   D+F++L+ LL+K++ +                    G LLQDH+   + FQQLPYHR+ ++L L++N PE VLE++NFQ LTAFC+T  I+RP+ APGF YAWLEL++HR FI R+LA TPQQKGW MY+ LLIDLFKYL PFLRN EL  P+ +LYKGTL+VLLVLL+DFPEFLCDYHYGFCD I  NCIQ+RNLI
Sbjct: 1837 QASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEA-TNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLI 2131          
BLAST of FC877869 vs. ExPASy Swiss-Prot
Match: CNOT1_HUMAN (CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 4.248e-91
Identity = 164/296 (55.41%), Postives = 211/296 (71.28%), Query Frame = 1
Query:   13 RARDYDDPPGLQDKTENLLREWRNVLLTPLTEIEVNQNFSLYVHRMNLNGILKSDDLITRFFRIATQMCIENVYQLVNEDRMNPP--PAVKREKYYAMCDSFIKLVTLLIKNTSDGGXXXXXXXXXXXXXXXXXAGCLLQDHEEHGTNFQQLPYHRMLLILFLDMNMPEPVLESMNFQVLTAFCHTLKIIRPSVAPGFCYAWLELVAHRAFINRLLAVTPQQKGWGMYSTLLIDLFKYLDPFLRNTELATPVMVLYKGTLKVLLVLLYDFPEFLCDYHYGFCDEILSNCIQMRNLI 894
            +A +YDDPPGL++K E LLREW N+  +     +  + FS +V +M+  GILK+DDLITRFFR+ T+MC+E  Y+   E + NP   P + R K Y   D+F++L+ LL+K++ +                    G LLQDH+   + FQQLPYHR+ ++L L++N PE VLE++NFQ LTAFC+T  I+RP+ APGF YAWLEL++HR FI R+LA TPQQKGW MY+ LLIDLFKYL PFLRN EL  P+ +LYKGTL+VLLVLL+DFPEFLCDYHYGFCD I  NCIQ+RNLI
Sbjct: 1838 QASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEA-TNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLI 2132          
BLAST of FC877869 vs. ExPASy Swiss-Prot
Match: CNOT1_DANRE (CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.753e-90
Identity = 163/295 (55.25%), Postives = 210/295 (71.19%), Query Frame = 1
Query:   13 RARDYDDPPGLQDKTENLLREWRNVLLTPLTEIEVNQNFSLYVHRMNLNGILKSDDLITRFFRIATQMCIENVYQLVNEDRM-NPPPAVKREKYYAMCDSFIKLVTLLIKNTSDGGXXXXXXXXXXXXXXXXXAGCLLQDHEEHGTNFQQLPYHRMLLILFLDMNMPEPVLESMNFQVLTAFCHTLKIIRPSVAPGFCYAWLELVAHRAFINRLLAVTPQQKGWGMYSTLLIDLFKYLDPFLRNTELATPVMVLYKGTLKVLLVLLYDFPEFLCDYHYGFCDEILSNCIQMRNLI 894
            +A +YDDPPGL++K E LLREW N+  +     +  + FS +V +M+  GILK+DDLITRFFR+ T+MC+E  Y+   E +     PA+ R K Y   D+F++L+ LL+K++ +                    G L+QDH+   T FQQLPYHR+ ++L L++N PE VLE++NFQ LTAFC+T  I+RP+ APGF YAWLEL++HR FI R+LA TPQQKGW MY+ LLIDLFKYL PFLRN EL  P+ +LYKGTL+VLLVLL+DFPEFLCDYHYGFCD I  NCIQ+RNLI
Sbjct: 1837 QASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHPTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEA-TNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLI 2130          
BLAST of FC877869 vs. ExPASy Swiss-Prot
Match: NOT1_YEAST (General negative regulator of transcription subunit 1 OS=Saccharomyces cerevisiae GN=NOT1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.262e-18
Identity = 52/173 (30.06%), Postives = 89/173 (51.45%), Query Frame = 1
Query:  424 QDHEEHGTNFQQLPYHRML--------------LILFLDMNMPEPVLE--SMNFQVLTAFCHTLKIIRPSVAPGFCYAWLELVAHRAFINRLLAVTPQQKGWGMYSTLLIDLFKYLDPFLRNTELATPVMVLYKGTLKVLLVLLYDFPEFLCDYHYGFCDEILSNCIQMRNLI 894
            +DH + GT F + PY R+                +   D +  + ++E  S+ +   + + H L+   P   PGF +AW+ L++HR  +  +L + P + GW     L+IDLFK+LD +     ++  V V+YKGTL+V+L +  D P FL + HY   + +     Q++N+I
Sbjct: 1678 KDHSQEGTTFNERPYFRLFSNILYEWATIRTHNFVRISDSSTRQELIEFDSVFYNTFSGYLHALQ---PFAFPGFSFAWVTLLSHRMLLPIMLRL-PNKIGWEKLMLLIIDLFKFLDQYTSKHAVSDAVSVVYKGTLRVILGISNDMPSFLIENHYELMNNLPPTYFQLKNVI 1846          
BLAST of FC877869 vs. ExPASy Swiss-Prot
Match: NOT1_SCHPO (General negative regulator of transcription subunit 1 OS=Schizosaccharomyces pombe GN=not1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.543e-16
Identity = 69/292 (23.63%), Postives = 124/292 (42.47%), Query Frame = 1
Query:   22 DYDDPPGLQDKTENLLREWRNVLLTPLTEIEVNQNFSLYVHRMNLNGILKSDDLITRFFRIATQMCIENVYQLVNEDRMNPPPAVKREKYYAMCDSFIKLVTLLIKNTSDGGXXXXXXXXXXXXXXXXXA-GCLLQDHEEHGTNFQQLPYHRMLLILFLDMNMPEPVLESMNFQVLTAFCHTLKIIRPSVAPGFCYAWLELVAHRAFINRLLAVTPQQKGWGMYSTLLIDLFKYLDPFLRNTELATPVMVLYKGTLKVLLVLLYDFPEFLCDYHYGFCDEILSNCIQMRNLI 894
            D D+   L D+   +   W ++L    T  E    F   V++++  GIL   +L  +FFR   +  +    +  +   +N P        Y   D++  L+  ++K T                       G   + H        Q  + R+   +  +++  + VLES    + +        I+P   P F +AWL L++H   + ++L V    K   ++S +L+   K+LD  L++        +LY G L+++LVLL+DFP FL  + Y     I   C+Q+RN++
Sbjct: 1576 DLDNKQQLNDQIIIVFVSWVHLLRNSATNDETKAAF---VYQLHKQGILSEPELCIQFFRCNLEAVLVAFLEAAS---VNAPD-------YFNVDAYASLLVNVVKYTEGSTEGTVSSKSVLFRKIIALIIGVFAELHNSMAEFVHQKTFFRLFSSILSELDDAKDVLESCFVDIYSVILECFLAIQPRSFPAFTFAWLSLISHSYLLPKVLLVN-NDKINDLFSEILMSFLKFLD--LKDDIDKAQFKLLYNGFLRIILVLLHDFPGFLATHCYQLIPYIPLECVQLRNMV 1851          
The following BLAST results are available for this feature:
BLAST of FC877869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CNOT1_XENTR1.907e-9155.74CCR4-NOT transcription complex subunit 1 OS=Xenopu... [more]
CNOT1_MOUSE4.248e-9155.41CCR4-NOT transcription complex subunit 1 OS=Mus mu... [more]
CNOT1_HUMAN4.248e-9155.41CCR4-NOT transcription complex subunit 1 OS=Homo s... [more]
CNOT1_DANRE2.753e-9055.25CCR4-NOT transcription complex subunit 1 OS=Danio ... [more]
NOT1_YEAST1.262e-1830.06General negative regulator of transcription subuni... [more]
NOT1_SCHPO1.543e-1623.63General negative regulator of transcription subuni... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA27DH06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877869 ID=FC877869; Name=FC877869; organism=Citrus clementina; type=EST; length=896bp
ATTCATCAAGTCAGGGCCCGCGACTACGACGACCCGCCCGGCCTCCAAGA
CAAGACGGAGAACCTGCTGCGCGAATGGAGGAACGTGCTCCTCACCCCGC
TCACCGAGATCGAAGTGAACCAAAATTTCAGCCTCTACGTGCACAGAATG
AATCTGAACGGCATACTGAAATCTGACGACTTGATTACACGTTTCTTCCG
CATTGCGACACAAATGTGCATCGAAAATGTGTACCAACTCGTCAACGAAG
ACAGAATGAACCCGCCGCCCGCTGTAAAGAGGGAGAAGTACTACGCGATG
TGCGACTCTTTCATTAAGCTGGTCACGTTGCTCATTAAAAACACGTCGGA
TGGCGGCAACCTCACCACGCCGAAACTCAACCTCTTGAACAAGATCTTGG
GCATCATAGCCGGCTGTCTCCTACAAGACCACGAGGAGCACGGCACCAAC
TTCCAGCAGCTGCCGTATCACAGGATGCTGCTGATACTATTCCTGGACAT
GAATATGCCGGAACCGGTTTTAGAATCTATGAATTTCCAGGTTCTCACAG
CGTTCTGTCATACACTGAAAATCATCCGTCCAAGTGTGGCGCCAGGGTTC
TGCTACGCCTGGCTGGAGCTGGTGGCTCACAGGGCCTTTATCAACAGACT
GCTTGCGGTCACACCACAACAGAAAGGCTGGGGCATGTACTCGACGCTGC
TGATCGACCTGTTCAAATACCTGGACCCGTTTCTCCGCAACACGGAGCTG
GCGACGCCGGTGATGGTCCTCTACAAGGGCACCCTCAAAGTGTTGCTCGT
CCTACTCTACGACTTCCCGGAGTTCCTGTGCGACTACCACTACGGCTTCT
GCGACGAGATCCTGTCGAACTGCATCCAGATGAGGAACCTGATCCT
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