FC877869
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877869 vs. ExPASy Swiss-Prot
Match: CNOT1_XENTR (CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis GN=cnot1 PE=2 SV=1) HSP 1 Score: 335.88 bits (860), Expect = 1.907e-91 Identity = 165/296 (55.74%), Postives = 211/296 (71.28%), Query Frame = 1 Query: 13 RARDYDDPPGLQDKTENLLREWRNVLLTPLTEIEVNQNFSLYVHRMNLNGILKSDDLITRFFRIATQMCIENVYQLVNEDRMNPP--PAVKREKYYAMCDSFIKLVTLLIKNTSDGGXXXXXXXXXXXXXXXXXAGCLLQDHEEHGTNFQQLPYHRMLLILFLDMNMPEPVLESMNFQVLTAFCHTLKIIRPSVAPGFCYAWLELVAHRAFINRLLAVTPQQKGWGMYSTLLIDLFKYLDPFLRNTELATPVMVLYKGTLKVLLVLLYDFPEFLCDYHYGFCDEILSNCIQMRNLI 894 +A +YDDPPGL++K E LLREW N+ + + + FS +V +M+ GILK+DDLITRFFR+ T+MC+E Y+ E + NP P + R K Y D+F++L+ LL+K++ + G LLQDHE + FQQLPYHR+ ++L L++N PE VLE++NFQ LTAFC+T I+RP+ APGF YAWLEL++HR FI R+LA TPQQKGW MY+ LLIDLFKYL PFLRN EL P+ +LYKGTL+VLLVLL+DFPEFLCDYHYGFCD I NCIQ+RNLI Sbjct: 1850 QASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEA-TNTVTKINLLNKVLGIVVGVLLQDHEVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLI 2144
BLAST of FC877869 vs. ExPASy Swiss-Prot
Match: CNOT1_MOUSE (CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1 PE=1 SV=2) HSP 1 Score: 334.724 bits (857), Expect = 4.248e-91 Identity = 164/296 (55.41%), Postives = 211/296 (71.28%), Query Frame = 1 Query: 13 RARDYDDPPGLQDKTENLLREWRNVLLTPLTEIEVNQNFSLYVHRMNLNGILKSDDLITRFFRIATQMCIENVYQLVNEDRMNPP--PAVKREKYYAMCDSFIKLVTLLIKNTSDGGXXXXXXXXXXXXXXXXXAGCLLQDHEEHGTNFQQLPYHRMLLILFLDMNMPEPVLESMNFQVLTAFCHTLKIIRPSVAPGFCYAWLELVAHRAFINRLLAVTPQQKGWGMYSTLLIDLFKYLDPFLRNTELATPVMVLYKGTLKVLLVLLYDFPEFLCDYHYGFCDEILSNCIQMRNLI 894 +A +YDDPPGL++K E LLREW N+ + + + FS +V +M+ GILK+DDLITRFFR+ T+MC+E Y+ E + NP P + R K Y D+F++L+ LL+K++ + G LLQDH+ + FQQLPYHR+ ++L L++N PE VLE++NFQ LTAFC+T I+RP+ APGF YAWLEL++HR FI R+LA TPQQKGW MY+ LLIDLFKYL PFLRN EL P+ +LYKGTL+VLLVLL+DFPEFLCDYHYGFCD I NCIQ+RNLI Sbjct: 1837 QASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEA-TNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLI 2131
BLAST of FC877869 vs. ExPASy Swiss-Prot
Match: CNOT1_HUMAN (CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2) HSP 1 Score: 334.724 bits (857), Expect = 4.248e-91 Identity = 164/296 (55.41%), Postives = 211/296 (71.28%), Query Frame = 1 Query: 13 RARDYDDPPGLQDKTENLLREWRNVLLTPLTEIEVNQNFSLYVHRMNLNGILKSDDLITRFFRIATQMCIENVYQLVNEDRMNPP--PAVKREKYYAMCDSFIKLVTLLIKNTSDGGXXXXXXXXXXXXXXXXXAGCLLQDHEEHGTNFQQLPYHRMLLILFLDMNMPEPVLESMNFQVLTAFCHTLKIIRPSVAPGFCYAWLELVAHRAFINRLLAVTPQQKGWGMYSTLLIDLFKYLDPFLRNTELATPVMVLYKGTLKVLLVLLYDFPEFLCDYHYGFCDEILSNCIQMRNLI 894 +A +YDDPPGL++K E LLREW N+ + + + FS +V +M+ GILK+DDLITRFFR+ T+MC+E Y+ E + NP P + R K Y D+F++L+ LL+K++ + G LLQDH+ + FQQLPYHR+ ++L L++N PE VLE++NFQ LTAFC+T I+RP+ APGF YAWLEL++HR FI R+LA TPQQKGW MY+ LLIDLFKYL PFLRN EL P+ +LYKGTL+VLLVLL+DFPEFLCDYHYGFCD I NCIQ+RNLI Sbjct: 1838 QASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEA-TNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLI 2132
BLAST of FC877869 vs. ExPASy Swiss-Prot
Match: CNOT1_DANRE (CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2 SV=1) HSP 1 Score: 332.028 bits (850), Expect = 2.753e-90 Identity = 163/295 (55.25%), Postives = 210/295 (71.19%), Query Frame = 1 Query: 13 RARDYDDPPGLQDKTENLLREWRNVLLTPLTEIEVNQNFSLYVHRMNLNGILKSDDLITRFFRIATQMCIENVYQLVNEDRM-NPPPAVKREKYYAMCDSFIKLVTLLIKNTSDGGXXXXXXXXXXXXXXXXXAGCLLQDHEEHGTNFQQLPYHRMLLILFLDMNMPEPVLESMNFQVLTAFCHTLKIIRPSVAPGFCYAWLELVAHRAFINRLLAVTPQQKGWGMYSTLLIDLFKYLDPFLRNTELATPVMVLYKGTLKVLLVLLYDFPEFLCDYHYGFCDEILSNCIQMRNLI 894 +A +YDDPPGL++K E LLREW N+ + + + FS +V +M+ GILK+DDLITRFFR+ T+MC+E Y+ E + PA+ R K Y D+F++L+ LL+K++ + G L+QDH+ T FQQLPYHR+ ++L L++N PE VLE++NFQ LTAFC+T I+RP+ APGF YAWLEL++HR FI R+LA TPQQKGW MY+ LLIDLFKYL PFLRN EL P+ +LYKGTL+VLLVLL+DFPEFLCDYHYGFCD I NCIQ+RNLI Sbjct: 1837 QASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHPTTSPAIIRAKCYHNLDAFVRLIALLVKHSGEA-TNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLI 2130
BLAST of FC877869 vs. ExPASy Swiss-Prot
Match: NOT1_YEAST (General negative regulator of transcription subunit 1 OS=Saccharomyces cerevisiae GN=NOT1 PE=1 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 1.262e-18 Identity = 52/173 (30.06%), Postives = 89/173 (51.45%), Query Frame = 1 Query: 424 QDHEEHGTNFQQLPYHRML--------------LILFLDMNMPEPVLE--SMNFQVLTAFCHTLKIIRPSVAPGFCYAWLELVAHRAFINRLLAVTPQQKGWGMYSTLLIDLFKYLDPFLRNTELATPVMVLYKGTLKVLLVLLYDFPEFLCDYHYGFCDEILSNCIQMRNLI 894 +DH + GT F + PY R+ + D + + ++E S+ + + + H L+ P PGF +AW+ L++HR + +L + P + GW L+IDLFK+LD + ++ V V+YKGTL+V+L + D P FL + HY + + Q++N+I Sbjct: 1678 KDHSQEGTTFNERPYFRLFSNILYEWATIRTHNFVRISDSSTRQELIEFDSVFYNTFSGYLHALQ---PFAFPGFSFAWVTLLSHRMLLPIMLRL-PNKIGWEKLMLLIIDLFKFLDQYTSKHAVSDAVSVVYKGTLRVILGISNDMPSFLIENHYELMNNLPPTYFQLKNVI 1846
BLAST of FC877869 vs. ExPASy Swiss-Prot
Match: NOT1_SCHPO (General negative regulator of transcription subunit 1 OS=Schizosaccharomyces pombe GN=not1 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.543e-16 Identity = 69/292 (23.63%), Postives = 124/292 (42.47%), Query Frame = 1 Query: 22 DYDDPPGLQDKTENLLREWRNVLLTPLTEIEVNQNFSLYVHRMNLNGILKSDDLITRFFRIATQMCIENVYQLVNEDRMNPPPAVKREKYYAMCDSFIKLVTLLIKNTSDGGXXXXXXXXXXXXXXXXXA-GCLLQDHEEHGTNFQQLPYHRMLLILFLDMNMPEPVLESMNFQVLTAFCHTLKIIRPSVAPGFCYAWLELVAHRAFINRLLAVTPQQKGWGMYSTLLIDLFKYLDPFLRNTELATPVMVLYKGTLKVLLVLLYDFPEFLCDYHYGFCDEILSNCIQMRNLI 894 D D+ L D+ + W ++L T E F V++++ GIL +L +FFR + + + + +N P Y D++ L+ ++K T G + H Q + R+ + +++ + VLES + + I+P P F +AWL L++H + ++L V K ++S +L+ K+LD L++ +LY G L+++LVLL+DFP FL + Y I C+Q+RN++ Sbjct: 1576 DLDNKQQLNDQIIIVFVSWVHLLRNSATNDETKAAF---VYQLHKQGILSEPELCIQFFRCNLEAVLVAFLEAAS---VNAPD-------YFNVDAYASLLVNVVKYTEGSTEGTVSSKSVLFRKIIALIIGVFAELHNSMAEFVHQKTFFRLFSSILSELDDAKDVLESCFVDIYSVILECFLAIQPRSFPAFTFAWLSLISHSYLLPKVLLVN-NDKINDLFSEILMSFLKFLD--LKDDIDKAQFKLLYNGFLRIILVLLHDFPGFLATHCYQLIPYIPLECVQLRNMV 1851 The following BLAST results are available for this feature:
BLAST of FC877869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877869 ID=FC877869; Name=FC877869; organism=Citrus clementina; type=EST; length=896bpback to top |