FC877876

Overview
NameFC877876
Unique NameFC877876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11861 contig Ccv1_Contig11861:34..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDX12_ARATH (Probable pyridoxal biosynthesis protein PDX1.2 OS=Arabidopsis thaliana GN=PDX12 PE=1 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 3.240e-90
Identity = 164/213 (77.00%), Postives = 193/213 (90.61%), Query Frame = 1
Query:  211 EDGAVTVYGGSAITDAKKN-PFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP--SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            + GAVT+Y G+AITDAKKN PFS+K GLAQ+LRGGAIVEVSSV QAK+AE+AGACS++VS+P  SR G++RMPDP L+K VKRAVSVPVM+R RVGHFVEAQILES+ +DYIDESE++ +AD+ +FINKHNFR PF+CGCR+ GEALRRIREGAAMIRIQGDL  +GNI ETVKNVRSLMG++R+LNNMD+DEVF FAKKI+APYDLVAQTKQ
Sbjct:   10 DQGAVTLYSGTAITDAKKNHPFSVKVGLAQVLRGGAIVEVSSVNQAKLAESAGACSVIVSDPVRSRGGVRRMPDPVLIKEVKRAVSVPVMARARVGHFVEAQILESLAVDYIDESEIISVADDDHFINKHNFRSPFICGCRDTGEALRRIREGAAMIRIQGDLTATGNIAETVKNVRSLMGEVRVLNNMDDDEVFTFAKKISAPYDLVAQTKQ 222          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDX1_HEVBR (Probable pyridoxal biosynthesis protein PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.179e-78
Identity = 144/218 (66.06%), Postives = 178/218 (81.65%), Query Frame = 1
Query:  205 MAEDGAVTVYGGSAITDAKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            MA  G V VYG  AIT+ KK+PFS+K GLAQMLRGG I++V + EQA+IAE AGAC++M  E       ++ G+ RM DP L+K +K++V++PVM++ R+GHFVEAQILE+IG+DY+DESEVL  ADE N INKHNFR PFVCGCRNLGEALRRIREGAAMIR +G+   +GN++E V++VRS+MGDIR+L NMD+DEVF FAKKIAAPYDLV QTKQ
Sbjct:    1 MAGTGVVAVYGNGAITETKKSPFSVKVGLAQMLRGGVIMDVVNPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGE-AGTGNVIEAVRHVRSVMGDIRLLRNMDDDEVFTFAKKIAAPYDLVMQTKQ 217          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDX13_ARATH (Pyridoxal biosynthesis protein PDX1.3 OS=Arabidopsis thaliana GN=PDX13 PE=1 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 4.853e-78
Identity = 144/218 (66.06%), Postives = 178/218 (81.65%), Query Frame = 1
Query:  205 MAEDGAVTVYGGSAITDAKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            M   G V VYG  AIT+AKK+PFS+K GLAQMLRGG I++V + EQA+IAE AGAC++M  E       ++ G+ RM DP ++K +K+AV++PVM++ R+GHFVEAQILE+IG+DYIDESEVL LADE + INKHNFR PFVCGCRNLGEALRRIREGAAMIR +G+   +GNI+E V++VRS+ GDIR+L NMD+DEVF FAKK+AAPYDLV QTKQ
Sbjct:    1 MEGTGVVAVYGNGAITEAKKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQMIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYIDESEVLTLADEDHHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGE-AGTGNIIEAVRHVRSVNGDIRVLRNMDDDEVFTFAKKLAAPYDLVMQTKQ 217          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDX1_PHAVU (Pyridoxal biosynthesis protein PDX1 OS=Phaseolus vulgaris GN=PDX1 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 2.254e-75
Identity = 138/208 (66.35%), Postives = 171/208 (82.21%), Query Frame = 1
Query:  235 GGSAITDAKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            G  AIT+ KK+PFS+K GLAQMLRGG I++V + +QA+IAE AGAC++M  E       ++ G+ RM DP L+K +KRAV++PVM++ R+GHFVEAQILE+IG+DY+DESEVL LAD+ N INKHNFR PFVCGCRNLGEALRRIREGAAMIR +G+   +GNI+E V++VRS+M DIR+L NMD+DEVF FAK IAAPYDLV QTKQ
Sbjct:   14 GNGAITETKKSPFSVKVGLAQMLRGGVIMDVVNADQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKEIKRAVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTLADDANHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGE-AGTGNIIEAVRHVRSVMSDIRVLRNMDDDEVFTFAKSIAAPYDLVMQTKQ 220          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDX11_ARATH (Pyridoxal biosynthesis protein PDX1.1 OS=Arabidopsis thaliana GN=PDX11 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.252e-74
Identity = 139/219 (63.47%), Postives = 176/219 (80.37%), Query Frame = 1
Query:  205 MAEDGAVTVYGGSAITDAK-KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            MA  G V VYG  A+T+ K K+PFS+K GLAQMLRGG I++V + EQA+IAE AGAC++M  E       ++ G+ RM DP ++K +K AV++PVM++ R+GHFVEAQILE+IG+DY+DESEVL LADE N INKHNF+ PFVCGCRNLGEALRRIREGAAMIR +G+   +GN+VE V++VRS+ G IR+L +MD+DEVF +AKKIAAPYDLV QTK+
Sbjct:    1 MAGTGVVAVYGEGAMTETKQKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPEMIKEIKNAVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTLADEDNHINKHNFKIPFVCGCRNLGEALRRIREGAAMIRTKGE-AGTGNVVEAVRHVRSVNGAIRLLRSMDDDEVFTYAKKIAAPYDLVVQTKE 218          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDX1_GINBI (Probable pyridoxal biosynthesis protein PDX1 OS=Ginkgo biloba GN=PDX1 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.110e-73
Identity = 137/218 (62.84%), Postives = 175/218 (80.28%), Query Frame = 1
Query:  205 MAEDGAVTVYGGSAITDAKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            MA DG VTVYG  AITD K + +++K GLAQMLRGG I++V + EQA+IAE AGA ++M  E       ++ G+ RM DP L+K +K AV++PVM++ R+GHFVEAQILE+IG+DYIDESEVL  AD+ + INKHNFR PFVCGCRNLGEALRRI EGAAMIR +G+   +GN++E V++VRS++GDIR L ++D+DEVFAFAK+IAAPY+LV QTKQ
Sbjct:    1 MASDGVVTVYGDGAITDTKVSSYAVKVGLAQMLRGGVIMDVVNAEQARIAEEAGATAVMALERVPADIRAQGGVARMSDPGLIKEIKSAVTIPVMAKARIGHFVEAQILEAIGIDYIDESEVLTPADDXHHINKHNFRIPFVCGCRNLGEALRRIAEGAAMIRTKGE-AGTGNVIEAVRHVRSVLGDIRKLQSLDDDEVFAFAKQIAAPYELVRQTKQ 217          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDX11_ORYSJ (Probable pyridoxal biosynthesis protein PDX1.1 OS=Oryza sativa subsp. japonica GN=PDX11 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.158e-71
Identity = 141/227 (62.11%), Postives = 179/227 (78.85%), Query Frame = 1
Query:  205 MAEDGA--VTVYG----GSAITDA---KKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            MA DG   VTVYG    G+A+ +    K   FS+K GLAQMLRGG I++V + EQA+IAE AGAC++M  E       ++ G+ RM DP L++ +KRAV++PVM++ R+GHFVEAQILE+IG+DY+DESEVL LAD+ + INKHNFR PFVCGCR+LGEALRRIREGAAMIR +G+   +GN+VE V++VRS+MGDIR L NMD+DEVF++AK+IAAPYDLV QTKQ
Sbjct:    1 MATDGTGVVTVYGSGTNGAALLEPSNHKSATFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPGLIRDIKRAVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTLADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGE-AGTGNVVEAVRHVRSVMGDIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQ 226          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDX12_ORYSJ (Probable pyridoxal biosynthesis protein PDX1.2 OS=Oryza sativa subsp. japonica GN=PDX12 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.852e-70
Identity = 134/220 (60.91%), Postives = 174/220 (79.09%), Query Frame = 1
Query:  205 MAEDGA--VTVYGGSAITDAKKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            MA DG   V +YGG+     K   FS+K GLAQMLRGG I++V + EQA+IAE AGAC++M  E       ++ G+ RM DP L++ +KR+V++PVM++ R+GH VEAQILE+IG+DY+DESEVL LAD+ + INK+NFR PFVCGCR+LGEALRRIREGAAMIR +G+   +GN+VE V++VRS+MGDIR L +MD+DEVF++AK+IAAPYDLV QTKQ
Sbjct:    1 MASDGTDVVALYGGANGLSHKSGSFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPGLIRDIKRSVTIPVMAKARIGHLVEAQILEAIGVDYVDESEVLTLADDAHHINKNNFRVPFVCGCRDLGEALRRIREGAAMIRTKGE-AGTGNVVEAVRHVRSVMGDIRALRSMDDDEVFSYAKRIAAPYDLVMQTKQ 219          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_ROSS1 (Pyridoxal biosynthesis lyase pdxS OS=Roseiflexus sp. (strain RS-1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.272e-58
Identity = 111/199 (55.78%), Postives = 152/199 (76.38%), Query Frame = 1
Query:  262 KNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQTKQ 840
            K+ ++ K GLAQML+GG I++V + EQA+IAE AGA ++M  E       ++ G+ RM DP L+ ++K AV++PVM++ R+GHFVEAQILE++G+DYIDESEVL  ADE + INKH FR PFVCGCRNLGEALRR+ EGAAM+R +G+   +GN+VE V++ R++  +IR L +MDEDE+F +AK I APY+LV Q  +
Sbjct:    3 KSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMSDPELILAIKEAVTIPVMAKARIGHFVEAQILEALGIDYIDESEVLTPADEEHHINKHKFRVPFVCGCRNLGEALRRVAEGAAMLRTKGE-AGTGNVVEAVRHARAVYSEIRRLQSMDEDELFTYAKNIQAPYELVRQVAE 200          
BLAST of FC877876 vs. ExPASy Swiss-Prot
Match: PDXS_CHLAD (Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pdxS PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.286e-58
Identity = 111/197 (56.35%), Postives = 154/197 (78.17%), Query Frame = 1
Query:  259 KKNPFSIKAGLAQMLRGGAIVEVSSVEQAKIAEAAGACSIMVSEP------SRPGIKRMPDPSLVKSVKRAVSVPVMSRVRVGHFVEAQILESIGLDYIDESEVLGLADEYNFINKHNFRFPFVCGCRNLGEALRRIREGAAMIRIQGDLLNSGNIVETVKNVRSLMGDIRILNNMDEDEVFAFAKKIAAPYDLVAQ 831
            +K+ ++ K GLAQML+GG I++V + EQA+IAE AGA ++M  E       ++ G+ RM DP L+ ++K+AV++PVM++ R+GHFVEAQ+LE+IG+DYIDESEVL  ADE + INKH FR PFVCGCRNLGEALRRI EGAAM+R +G+   +GN+VE V++ R++  +IR L +M+EDE+F +AK+I APY+LV Q
Sbjct:    2 EKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMSDPELILAIKQAVTIPVMAKARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKFRVPFVCGCRNLGEALRRIAEGAAMLRTKGE-AGTGNVVEAVRHARAVYSEIRRLQSMNEDELFTYAKQIQAPYELVKQ 197          
The following BLAST results are available for this feature:
BLAST of FC877876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
PDX12_ARATH3.240e-9077.00Probable pyridoxal biosynthesis protein PDX1.2 OS=... [more]
PDX1_HEVBR2.179e-7866.06Probable pyridoxal biosynthesis protein PDX1 OS=He... [more]
PDX13_ARATH4.853e-7866.06Pyridoxal biosynthesis protein PDX1.3 OS=Arabidops... [more]
PDX1_PHAVU2.254e-7566.35Pyridoxal biosynthesis protein PDX1 OS=Phaseolus v... [more]
PDX11_ARATH4.252e-7463.47Pyridoxal biosynthesis protein PDX1.1 OS=Arabidops... [more]
PDX1_GINBI2.110e-7362.84Probable pyridoxal biosynthesis protein PDX1 OS=Gi... [more]
PDX11_ORYSJ1.158e-7162.11Probable pyridoxal biosynthesis protein PDX1.1 OS=... [more]
PDX12_ORYSJ2.852e-7060.91Probable pyridoxal biosynthesis protein PDX1.2 OS=... [more]
PDXS_ROSS14.272e-5855.78Pyridoxal biosynthesis lyase pdxS OS=Roseiflexus s... [more]
PDXS_CHLAD7.286e-5856.35Pyridoxal biosynthesis lyase pdxS OS=Chloroflexus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877876 ID=FC877876; Name=FC877876; organism=Citrus clementina; type=EST; length=841bp
TCGAAATTTCTACACTAATCAATCAATTCCCCACCGACTAACCCCACCTT
CGAAGCTCTTCAGAACCTTCTCGAACTCGCCCCAATCCTCACCCTCCCTT
CAATTTTATAAACCCTTTCTACAAAAAGAAACCCAGTACTCGATCAAACG
ATTCAATAACTACGCTTCTCGCATCAGTGAGACATTTTTACAAACGCCTT
TGCAATGGCCGAAGACGGAGCGGTCACAGTGTACGGTGGCAGCGCCATTA
CTGACGCCAAGAAGAACCCGTTTTCGATCAAAGCCGGCCTTGCCCAAATG
CTACGTGGCGGGGCCATTGTTGAAGTCTCCAGTGTGGAACAAGCCAAGAT
CGCCGAAGCAGCTGGCGCCTGTTCTATCATGGTATCCGAGCCCAGCCGGC
CCGGCATTAAGCGCATGCCGGATCCTTCTCTCGTTAAAAGCGTTAAACGC
GCCGTTTCAGTCCCCGTTATGTCACGTGTTCGTGTTGGGCATTTTGTTGA
AGCGCAGATTCTTGAAAGTATTGGGCTCGATTACATTGACGAGAGTGAGG
TTTTAGGATTAGCTGATGAATATAATTTTATTAACAAACATAACTTTAGG
TTCCCGTTTGTGTGTGGTTGTAGGAATCTTGGTGAAGCTTTGAGGAGAAT
TAGAGAAGGAGCTGCTATGATAAGAATACAAGGGGATTTGTTAAATTCTG
GTAATATTGTCGAGACTGTTAAAAATGTGAGGTCGTTAATGGGAGATATT
CGAATTTTGAATAACATGGATGAAGATGAGGTCTTCGCGTTTGCTAAGAA
GATAGCGGCTCCTTATGATTTGGTGGCTCAAACTAAACAAA
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