FC877884

Overview
NameFC877884
Unique NameFC877884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877884_ssr202 microsatellite FC877884_ssr202:202..211. BLAST: Citrus ESTs to Prunus persica proteins V1
FC877884_ssr36 microsatellite FC877884_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11621 contig Ccv1_Contig11621:17..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: IBR5_ARATH (Protein-tyrosine-phosphatase IBR5 OS=Arabidopsis thaliana GN=IBR5 PE=1 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 8.860e-83
Identity = 149/215 (69.30%), Postives = 178/215 (82.79%), Query Frame = 1
Query:  190 MRKRERENPCSVCGHYHKYEEGEVCGICGHRSASSAEKTTTLQV--SAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSVDGSNPTPLPALSA-XMPSFSFGFPKGNN 825
            MRKRERENPCS+CGHYHKYEEGEVCG+CGH    S++     QV  SAFPSEILP+FLYLGSYDNASRS LLKTQGISRVLNTVP CQNLY+NSFTYH L+++K+LQFDDAI+FL+QCE+DKA VLVHCM GK+RS A+V+AYLMK KGWRLA+SHQWVK+RRPS +++ + +QQLQE+EQ IFGS        + A++    P+F FGFPK +N
Sbjct:    1 MRKRERENPCSICGHYHKYEEGEVCGVCGHCMPVSSDTVAPQQVHVSAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNTVPMCQNLYRNSFTYHGLDNEKVLQFDDAIKFLDQCEKDKARVLVHCMSGKSRSPAVVVAYLMKRKGWRLAESHQWVKQRRPSTDISPEFYQQLQEFEQGIFGS------EMMSAMNINDAPTFGFGFPKIDN 209          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: DUS4_RAT (Dual specificity protein phosphatase 4 OS=Rattus norvegicus GN=Dusp4 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16
Identity = 65/198 (32.83%), Postives = 100/198 (50.51%), Query Frame = 1
Query:  262 CGICGHRSASSAEKTTTLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCL--ED----DKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFG---SVDGSNPT-PLPALSAXMPS----FSFGFP 813
            C  CG          T L     P EILP FLYLGS  +A+R  +L   GI+ +LN    C N ++  + Y C+  ED    D    F +AI++++  +  +  VLVHC  G +RSA I +AYLM  K  RL ++ ++VK+RR  ++       QL ++E ++     + + ++P+ PL       P+    F F FP
Sbjct:  184 CSSCG----------TPLHDQGGPVEILP-FLYLGSAYHAARRDMLDALGITALLNVSSDCPNHFEGHYQYKCIPVEDNHKADISSWFMEAIEYIDAVKDCRGRVLVHCQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRSIISPNFSFMGQLLQFESQVLTTSCAAEAASPSGPLRERGKATPTPTSQFVFSFP 370          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: DUS4_MOUSE (Dual specificity protein phosphatase 4 OS=Mus musculus GN=Dusp4 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16
Identity = 65/198 (32.83%), Postives = 100/198 (50.51%), Query Frame = 1
Query:  262 CGICGHRSASSAEKTTTLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCL--ED----DKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFG---SVDGSNPT-PLPALSAXMPS----FSFGFP 813
            C  CG          T L     P EILP FLYLGS  +A+R  +L   GI+ +LN    C N ++  + Y C+  ED    D    F +AI++++  +  +  VLVHC  G +RSA I +AYLM  K  RL ++ ++VK+RR  ++       QL ++E ++     + + ++P+ PL       P+    F F FP
Sbjct:  187 CSSCG----------TPLHDQGGPVEILP-FLYLGSAYHAARRDMLDALGITALLNVSSDCPNHFEGHYQYKCIPVEDNHKADISSWFMEAIEYIDAVKDCRGRVLVHCQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRSIISPNFSFMGQLLQFESQVLTTSCAAEAASPSGPLRERGKATPTPTSQFVFSFP 373          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: DUS4_CHICK (Dual specificity protein phosphatase 4 OS=Gallus gallus GN=DUSP4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.882e-16
Identity = 61/183 (33.33%), Postives = 95/183 (51.91%), Query Frame = 1
Query:  307 TTLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCL--ED----DKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFG---SVDGSNPTPL-----PALSAXMPSFSFGFP 813
            T L     P EILP FLYLGS  +A+R  +L   GI+ +LN    C N ++  + Y C+  ED    D    F +AI++++  +     VLVHC  G +RSA I +AYLM  K  +L ++ ++VK+RR  ++       QL ++E ++     +V+ ++P+        A S     F F FP
Sbjct:  169 TPLHDQGGPVEILP-FLYLGSAYHAARRDMLDALGITALLNVSSDCPNHFEGHYQYKCIPVEDNHKADISSWFMEAIEYIDSVKECCGRVLVHCQAGISRSATICLAYLMMKKRVKLEKAFEFVKQRRSIISPNFSFMGQLLQFESQVLATSCAVEAASPSGTLRERGKATSTPTSQFVFSFP 350          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: MPL3_DICDI (MAP kinase phosphatase with leucine-rich repeats protein 3 OS=Dictyostelium discoideum GN=mpl3 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16
Identity = 48/145 (33.10%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  319 VSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLEDDKILQFDDAIQFLEQCE------RDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIF 735
            V++ PSEI+P  ++LG  D+A+ + +L+T GI+ +L  +  C+  +  +F Y+ ++D +     D  Q  EQ        R    VLVHC  G +RS+ +VI+YLMK +     Q+   V+ +RP +        QL +YE K+F
Sbjct:  629 VTSIPSEIIPG-IFLGGLDSANNAPILQTLGITHILLAIGDCEPFFPKTFKYYSIDDARDAPQYDISQHFEQTNCFIESGRKSGGVLVHCRAGISRSSTLVISYLMKYQRMTFKQAMDLVQSKRPQIQPNPGFKDQLLKYEAKLF 772          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: DUS4_HUMAN (Dual specificity protein phosphatase 4 OS=Homo sapiens GN=DUSP4 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.210e-16
Identity = 57/166 (34.34%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  262 CGICGHRSASSAEKTTTLQVSAFPSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCL--ED----DKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGS 741
            C  CG          T L     P EILP FLYLGS  +A+R  +L   GI+ +LN    C N ++  + Y C+  ED    D    F +AI++++  +  +  VLVHC  G +RSA I +AYLM  K  RL ++ ++VK+RR  ++       QL ++E ++  +
Sbjct:  183 CSSCG----------TPLHDQGGPVEILP-FLYLGSAYHAARRDMLDALGITALLNVSSDCPNHFEGHYQYKCIPVEDNHKADISSWFMEAIEYIDAVKDCRGRVLVHCQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRSIISPNFSFMGQLLQFESQVLAT 337          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: DUS16_HUMAN (Dual specificity protein phosphatase 16 OS=Homo sapiens GN=DUSP16 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.476e-16
Identity = 53/150 (35.33%), Postives = 85/150 (56.67%), Query Frame = 1
Query:  331 PSEILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN---LYKNSFTYHCLED---DKILQF-DDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQKIFGSVDGSNP 759
            P+ ILP+ LYLG   +     L++  GI  VLN   +C     + ++ F    + D   +KIL + D ++ F+E+ +    CVLVHC+ G +RSA I IAY+MK     L +++++VKE+RP+++   +   QL +YE+KI      S P
Sbjct:  159 PTRILPN-LYLGCQRDVLNKELMQQNGIGYVLNASNTCPKPDFIPESHFLRVPVNDSFCEKILPWLDKSVDFIEKAKASNGCVLVHCLAGISRSATIAIAYIMKRMDMSLDEAYRFVKEKRPTISPNFNFLGQLLDYEKKIKNQTGASGP 307          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: DUS8_HUMAN (Dual specificity protein phosphatase 8 OS=Homo sapiens GN=DUSP8 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.220e-15
Identity = 63/197 (31.98%), Postives = 100/197 (50.76%), Query Frame = 1
Query:  265 GICGHRSASSAEKTTTLQVSAFPS----EILPDFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQN---LYKNSFTYHCLED---DKILQF-DDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYEQ--KIFGSVDGS--------NPTPLPALSAXMP 792
            G+C  + A+    + +      PS     ILP  LYLGS  +     L+   GIS VLN   SC     + ++ F    + D   +K+L + D +I+F+++ +     V+VHC+ G +RSA I IAY+MK  G     ++++VK+RRPS++   +   QL EYE+  K+  ++ G          P P PA  A +P
Sbjct:  135 GLCEGKPAALLPMSLSQPCLPVPSVGLTRILPH-LYLGSQKDVLNKDLMTQNGISYVLNASNSCPKPDFICESRFMRVPINDNYCEKLLPWLDKSIEFIDKAKLSSCQVIVHCLAGISRSATIAIAYIMKTMGMSSDDAYRFVKDRRPSISPNFNFLGQLLEYERSLKLLAALQGDPGTPSGTPEPPPSPAAGAPLP 330          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: SSH1_MOUSE (Protein phosphatase Slingshot homolog 1 OS=Mus musculus GN=Ssh1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.081e-15
Identity = 46/131 (35.11%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  349 DFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLE------DDKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYE 723
            D LYLGS  NAS    L+  G+  +LN      N +   F YH +        D +  +++A  F+ + +R+ +  LVHC  G +RSA+ VIAY MK  GW L +++ +VK++R          +QL EYE
Sbjct:  314 DHLYLGSEWNASNLEELQGSGVDYILNVTREIDNFFPGLFAYHNIRVYDEETTDLLAHWNEAYHFINKAKRNHSKCLVHCKMGVSRSASTVIAYAMKEFGWPLEKAYNYVKQKRSITRPNAGFMRQLSEYE 444          
BLAST of FC877884 vs. ExPASy Swiss-Prot
Match: SSH1_HUMAN (Protein phosphatase Slingshot homolog 1 OS=Homo sapiens GN=SSH1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.081e-15
Identity = 46/131 (35.11%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  349 DFLYLGSYDNASRSGLLKTQGISRVLNTVPSCQNLYKNSFTYHCLE------DDKILQFDDAIQFLEQCERDKACVLVHCMFGKNRSAAIVIAYLMKCKGWRLAQSHQWVKERRPSVNLTEDVHQQLQEYE 723
            D LYLGS  NAS    L+  G+  +LN      N +   F YH +        D +  +++A  F+ + +R+ +  LVHC  G +RSA+ VIAY MK  GW L +++ +VK++R          +QL EYE
Sbjct:  314 DHLYLGSEWNASNLEELQGSGVDYILNVTREIDNFFPGLFAYHNIRVYDEETTDLLAHWNEAYHFINKAKRNHSKCLVHCKMGVSRSASTVIAYAMKEFGWPLEKAYNYVKQKRSITRPNAGFMRQLSEYE 444          
The following BLAST results are available for this feature:
BLAST of FC877884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
IBR5_ARATH8.860e-8369.30Protein-tyrosine-phosphatase IBR5 OS=Arabidopsis t... [more]
DUS4_RAT1.441e-1632.83Dual specificity protein phosphatase 4 OS=Rattus n... [more]
DUS4_MOUSE1.441e-1632.83Dual specificity protein phosphatase 4 OS=Mus musc... [more]
DUS4_CHICK1.882e-1633.33Dual specificity protein phosphatase 4 OS=Gallus g... [more]
MPL3_DICDI2.458e-1633.10MAP kinase phosphatase with leucine-rich repeats p... [more]
DUS4_HUMAN3.210e-1634.34Dual specificity protein phosphatase 4 OS=Homo sap... [more]
DUS16_HUMAN5.476e-1635.33Dual specificity protein phosphatase 16 OS=Homo sa... [more]
DUS8_HUMAN1.220e-1531.98Dual specificity protein phosphatase 8 OS=Homo sap... [more]
SSH1_MOUSE2.081e-1535.11Protein phosphatase Slingshot homolog 1 OS=Mus mus... [more]
SSH1_HUMAN2.081e-1535.11Protein phosphatase Slingshot homolog 1 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO05RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877884 ID=FC877884; Name=FC877884; organism=Citrus clementina; type=EST; length=858bp
TCAATAACAGTGACAATAGCAATTGCATAATCATAAATCAATCAATCAAA
CCACCGCAACAGTCTCATCAAACATCAATCAACTTTCTTTTTATCAAACA
TTTTCGGTTCTAATTTACCGTATTAATAATAAGGAAATTATAGTAATTAA
AATTTAGAGAAATAAATAATAAAGATTTGGTTGTTTGTTATGAGGAAGAG
GGAGAGAGAGAACCCCTGCTCTGTGTGCGGGCACTACCACAAGTACGAGG
AAGGAGAAGTTTGCGGGATTTGCGGCCACCGCTCTGCGTCGTCGGCAGAG
AAGACGACGACGCTCCAAGTCAGCGCGTTTCCGTCTGAGATCCTGCCCGA
TTTCCTCTATTTGGGCAGCTACGACAACGCGTCTCGCTCAGGGCTTCTGA
AGACTCAAGGGATCTCGCGTGTTCTTAATACGGTACCTTCTTGTCAAAAT
CTCTACAAGAACTCATTTACCTATCACTGCCTTGAAGATGACAAAATTTT
ACAATTCGATGATGCAATTCAGTTTTTAGAACAATGTGAGAGGGACAAAG
CTTGTGTTCTCGTGCACTGCATGTTTGGAAAAAACAGGTCGGCTGCTATT
GTAATAGCATACTTGATGAAGTGTAAAGGATGGAGACTTGCACAGAGTCA
TCAGTGGGTGAAAGAGCGGAGACCATCTGTTAACTTAACAGAAGATGTCC
ACCAACAGTTGCAGGAGTATGAACAGAAGATCTTTGGGTCAGTTGATGGT
AGCAATCCTACTCCCTTGCCTGCTCTGTCTGCANGCATGCCATCCTTTAG
CTTCGGCTTCCCAAAGGGTAATAATGATCCTGTTCCTGTACCTGTCCCTG
CCCCTGCC
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